Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014192

Physical Location & Seq

Genomic Coordinates Forward (+)

29165170 .. 29167773

Gene Structure 2604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAGGAAGGAAGTATGTTCAGATCTCTATTAGCGATTCTTCAGTGGTGGGGTTTCAATGTTACCGTCATCATCATGAACAAATGGATCTTTCAGAAACTGGATTTTAAGTTTCCACTATCGGTTTCATGTGTTCACTTCATATGTTCGTCGATTGGAGCTTACATCGTTATCAAAGTTCTCAAGCTTAAACCATTGATTGTTGTCGATCCTGAAGATCGATGGAGGAGGATTTTTCCAATGTCTTTCGTGTTTTGTATCAACATTGTCTTGGGAAATGTCAGTCTTCGTTACATTCCGGTTTCGTTTATGCAGACGATTAAGTCTTTCACTCCAGCTACTACAGTTGTGTTACAGTGGCTGGTATGGAGGAAATACTTTGACTGGCGTATTTGGGCGTCTCTCGTGCCTATTGTTGGTGGAATTCTTCTGACATCTGTGACTGAACTTAGTTTTAACATGTTTGGATTCTGTGCTGCCCTGTTTGGATGTTTAGCTACTTCCACAAAGACCATTCTAGCCGAATCTCTTCTTCATGGTTACAAATTTGACAGCATAAACACCGTTTACTATATGGCGCCTTTTGCCACCATGATTCTCGGGATACCAGCGTTATTACTGGAAGGCAGTGGAATTTTGAGCTGGTTTGAAGCACACCCTGCTCCCTGGTCAGCCCTCATCATTATACTCAGTTCTGGTGTTCTAGCCTTCTGTCTCAACTTCTCCATCTTCTATGTCATTCACTCCACAACTGCAGTCACATTCAACGTGGCTGGAAACCTTAAGGTTGCAGTGGCTGTAATGGTCTCATGGTTGATATTCCGTAACCCAATATCATATATGAATGCTGTTGGATGCGGAATTACGCTTGTGGGCTGCACGTTTTATGGATATGTGAGGCATATGCTTTCACAGCAAACACCGGGAACTCCTAGGACTCCTCGTACCCCAAGAAGCAAGATGGAATTACTTCCACTTGTTAATAATGATAAACTCGAAGGCAAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005457 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015783 GO:0015786 GO:0015931 GO:0015932 GO:0022857 GO:0034220 GO:0036080 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072334 GO:0090480 GO:0090481 GO:0098656 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

336

Amino Acids

37.79

Weight (kDa)

9.35

Isoelectric Point (pI)

36.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	10 - 296	9.4e-51	Triose-phosphate Transporter family
UAA	PF08449	10 - 298	5.3e-13	UAA transporter family
EamA	PF00892	25 - 146	6.1e-09	EamA-like transporter family
EamA	PF00892	155 - 295	3.7e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21870 AT1G77610
fragaria_vesca	FvH4_2g26800 FvH4_2g26800
malus_domestica	MD08G1164800.v1.1 MD15G1350800.v1.1
prunus_persica	Prupe.1G499700_v2.0.a1
pyrus_communis	pycom12654g00030 pycom15g31330
rosa_chinensis	RchiOBHm_Chr6g0295661
rosa_laevigata	RLG00000011778
rosa_multiflora	Rmu_sc0006802.1_g000008 Rmu_sc0015254.1_g000002
rosa_rugosa	Rorug06G0253200
rosa_samantha	Rh6CG380700 Rh6DG367600
rosa_wichuraiana	Rw6G031970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	322
AccB1I	GGYRCC	1 cut(s)	577
AciI	CCGC	1 cut(s)	858
AclWI	GGATC	2 cut(s)	95, 203
AcsI	RAATTY	3 cut(s)	423, 545, 633
AcuI	CTGAAG	2 cut(s)	26, 234
AcyI	GRCGYC	2 cut(s)	398, 578
AfaI	GTAC	1 cut(s)	946
AfiI	CCNNNNNNNGG	1 cut(s)	416
AflII	CTTAAG	1 cut(s)	782
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	3 cut(s)	58, 650, 766
AjnI	CCWGG	1 cut(s)	665
AluBI	AGCT	5 cut(s)	161, 187, 338, 497, 642
AluI	AGCT	5 cut(s)	161, 187, 338, 497, 642
Alw26I	GTCTC	3 cut(s)	405, 719, 811
AlwI	GGATC	2 cut(s)	95, 203
AlwNI	CAGNNNCTG	3 cut(s)	100, 361, 797
Ama87I	CYCGRG	1 cut(s)	599
ApeKI	GCWGC	2 cut(s)	476, 876
ApoI	RAATTY	3 cut(s)	423, 545, 633
ArsI	GACNNNNNNTTYG	1 cut(s)	990
Asp700I	GAANNNNTTC	2 cut(s)	528, 969
AspA2I	CCTAGG	1 cut(s)	932
AspLEI	GCGC	1 cut(s)	580
AsuC2I	CCSGG	1 cut(s)	924
AvaI	CYCGRG	1 cut(s)	599
AvrII	CCTAGG	1 cut(s)	932
BaeI	ACNNNNGTAYC	2 cut(s)	596, 629
BanI	GGYRCC	1 cut(s)	577
BauI	CACGAG	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	463, 863
BccI	CCATC	3 cut(s)	216, 734, 955
BciT130I	CCWGG	1 cut(s)	667
BciVI	GTATCC	1 cut(s)	597
BcnI	CCSGG	1 cut(s)	924
BcoDI	GTCTC	3 cut(s)	405, 719, 811
BfaI	CTAG	3 cut(s)	518, 704, 933
BfmI	CTRYAG	2 cut(s)	342, 753
BfoI	RGCGCY	1 cut(s)	581
BfrI	CTTAAG	1 cut(s)	782
BfuI	GTATCC	1 cut(s)	597
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	2 cut(s)	477, 877
BlnI	CCTAGG	1 cut(s)	932
BlsI	GCNGC	2 cut(s)	478, 878
Bme1390I	CCNGG	2 cut(s)	667, 924
BmeT110I	CYCGRG	1 cut(s)	599
BmiI	GGNNCC	1 cut(s)	579
BmrFI	CCNGG	2 cut(s)	667, 924
BmsI	GCATC	1 cut(s)	845
BpiI	GAAGAC	1 cut(s)	278
BpmI	CTGGAG	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	924
Bsa29I	ATCGAT	1 cut(s)	220
BsaHI	GRCGYC	2 cut(s)	398, 578
BsaI	GGTCTC	1 cut(s)	811
BsaJI	CCNNGG	2 cut(s)	665, 932
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse1I	ACTGG	3 cut(s)	105, 389, 624
BseBI	CCWGG	1 cut(s)	667
BseCI	ATCGAT	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	665, 932
BseGI	GGATG	2 cut(s)	494, 860
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseMII	CTCAG	1 cut(s)	703
BseNI	ACTGG	3 cut(s)	105, 389, 624
BseRI	GAGGAG	2 cut(s)	241, 930
BseXI	GCAGC	2 cut(s)	463, 863
BsgI	GTGCAG	1 cut(s)	862
BshNI	GGYRCC	1 cut(s)	577
BshVI	ATCGAT	1 cut(s)	220
BsiHKCI	CYCGRG	1 cut(s)	599
BsiSI	CCGG	2 cut(s)	299, 923
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmAI	GTCTC	3 cut(s)	405, 719, 811
BsmBI	CGTCTC	1 cut(s)	405
BsmI	GAATGC	1 cut(s)	850
Bso31I	GGTCTC	1 cut(s)	811
BsoBI	CYCGRG	1 cut(s)	599
Bsp143I	GATC	4 cut(s)	23, 87, 208, 217
BspACI	CCGC	1 cut(s)	858
BspCNI	CTCAG	1 cut(s)	702
BspDI	ATCGAT	1 cut(s)	220
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	579
BspMAI	CTGCAG	1 cut(s)	757
BspPI	GGATC	2 cut(s)	95, 203
BspT107I	GGYRCC	1 cut(s)	577
BspTI	CTTAAG	1 cut(s)	782
BspTNI	GGTCTC	1 cut(s)	811
BsrI	ACTGG	3 cut(s)	105, 389, 624
BssECI	CCNNGG	2 cut(s)	665, 932
BssMI	GATC	4 cut(s)	23, 87, 208, 217
BssNI	GRCGYC	2 cut(s)	398, 578
BssSI	CACGAG	1 cut(s)	404
BssT1I	CCWWGG	1 cut(s)	932
Bst2BI	CACGAG	1 cut(s)	404
Bst2UI	CCWGG	1 cut(s)	667
Bst4CI	ACNGT	4 cut(s)	67, 346, 357, 565
Bst6I	CTCTTC	1 cut(s)	534
BstACI	GRCGYC	2 cut(s)	398, 578
BstAFI	CTTAAG	1 cut(s)	782
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstDEI	CTNAG	2 cut(s)	449, 689
BstF5I	GGATG	2 cut(s)	494, 860
BstH2I	RGCGCY	1 cut(s)	581
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	4 cut(s)	26, 90, 211, 220
BstMAI	GTCTC	3 cut(s)	405, 719, 811
BstMBI	GATC	4 cut(s)	23, 87, 208, 217
BstMWI	GCNNNNNNNGC	3 cut(s)	584, 659, 913
BstNI	CCWGG	1 cut(s)	667
BstNSI	RCATGY	1 cut(s)	463
BstSCI	CCNGG	2 cut(s)	665, 922
BstSFI	CTRYAG	2 cut(s)	342, 753
BstV1I	GCAGC	2 cut(s)	463, 863
BstV2I	GAAGAC	1 cut(s)	278
BstX2I	RGATCY	2 cut(s)	23, 87
BstYI	RGATCY	2 cut(s)	23, 87
Bsu15I	ATCGAT	1 cut(s)	220
BsuI	GTATCC	1 cut(s)	597
BsuTUI	ATCGAT	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	494, 860
BtsI	GCAGTG	2 cut(s)	634, 798
BtsIMutI	CAGTG	4 cut(s)	50, 362, 634, 798
CaiI	CAGNNNCTG	3 cut(s)	100, 361, 797
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	1 cut(s)	580
ClaI	ATCGAT	1 cut(s)	220
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	945
CviAII	CATG	6 cut(s)	76, 129, 460, 536, 592, 810
CviQI	GTAC	1 cut(s)	945
DdeI	CTNAG	2 cut(s)	449, 689
DinI	GGCGCC	1 cut(s)	579
DpnI	GATC	4 cut(s)	25, 89, 210, 219
DpnII	GATC	4 cut(s)	23, 87, 208, 217
DrdI	GACNNNNNNGTC	1 cut(s)	322
DseDI	GACNNNNNNGTC	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	932
Eco31I	GGTCTC	1 cut(s)	811
Eco57I	CTGAAG	2 cut(s)	26, 234
Eco88I	CYCGRG	1 cut(s)	599
EcoRI	GAATTC	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	665
EcoT14I	CCWWGG	1 cut(s)	932
EgeI	GGCGCC	1 cut(s)	579
EheI	GGCGCC	1 cut(s)	579
ErhI	CCWWGG	1 cut(s)	932
Esp3I	CGTCTC	1 cut(s)	405
FaeI	CATG	6 cut(s)	79, 132, 463, 539, 595, 813
FatI	CATG	6 cut(s)	75, 128, 459, 535, 591, 809
FauNDI	CATATG	2 cut(s)	143, 903
Fnu4HI	GCNGC	2 cut(s)	477, 877
FokI	GGATG	2 cut(s)	501, 867
Fsp4HI	GCNGC	2 cut(s)	477, 877
FspBI	CTAG	3 cut(s)	518, 704, 933
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	2 cut(s)	477, 877
GsuI	CTGGAG	1 cut(s)	318
HaeII	RGCGCY	1 cut(s)	581
HapII	CCGG	2 cut(s)	299, 923
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	1 cut(s)	580
Hin1I	GRCGYC	2 cut(s)	398, 578
Hin1II	CATG	6 cut(s)	79, 132, 463, 539, 595, 813
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	5 cut(s)	37, 468, 524, 595, 937
HpaII	CCGG	2 cut(s)	299, 923
Hpy166II	GTNNAC	2 cut(s)	136, 568
Hpy188I	TCNGA	4 cut(s)	23, 96, 432, 1010
Hpy188III	TCNNGA	3 cut(s)	76, 212, 601
Hpy8I	GTNNAC	2 cut(s)	136, 568
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	3 cut(s)	617, 718, 992
HpyCH4III	ACNGT	4 cut(s)	67, 346, 357, 565
HpyCH4IV	ACGT	2 cut(s)	768, 881
HpyCH4V	TGCA	4 cut(s)	313, 755, 791, 879
HpyF10VI	GCNNNNNNNGC	3 cut(s)	584, 659, 913
HpyF3I	CTNAG	2 cut(s)	449, 689
HpySE526I	ACGT	2 cut(s)	768, 881
Hsp92I	GRCGYC	2 cut(s)	398, 578
Hsp92II	CATG	6 cut(s)	79, 132, 463, 539, 595, 813
HspAI	GCGC	1 cut(s)	578
KasI	GGCGCC	1 cut(s)	577
Kzo9I	GATC	4 cut(s)	23, 87, 208, 217
LmnI	GCTCC	2 cut(s)	158, 667
Lsp1109I	GCAGC	2 cut(s)	463, 863
LweI	GCATC	1 cut(s)	845
MaeI	CTAG	3 cut(s)	518, 704, 933
MaeII	ACGT	2 cut(s)	768, 881
MaeIII	GTNAC	7 cut(s)	61, 290, 351, 439, 539, 757, 824
MalI	GATC	4 cut(s)	25, 89, 210, 219
MboI	GATC	4 cut(s)	23, 87, 208, 217
MboII	GAAGA	7 cut(s)	32, 227, 278, 419, 521, 524, 721
MflI	RGATCY	2 cut(s)	23, 87
MluCI	AATT	5 cut(s)	423, 545, 633, 861, 965
Mly113I	GGCGCC	1 cut(s)	578
MlyI	GAGTC	1 cut(s)	931
MmeI	TCCRAC	1 cut(s)	832
MnlI	CCTC	6 cut(s)	219, 222, 363, 686, 891, 951
MroXI	GAANNNNTTC	2 cut(s)	528, 969
MseI	TTAA	6 cut(s)	108, 189, 321, 456, 783, 981
MslI	CAYNNNNRTG	1 cut(s)	74
MspCI	CTTAAG	1 cut(s)	782
MspI	CCGG	2 cut(s)	299, 923
MspR9I	CCNGG	2 cut(s)	667, 924
Mva1269I	GAATGC	1 cut(s)	850
MvaI	CCWGG	1 cut(s)	667
MwoI	GCNNNNNNNGC	3 cut(s)	584, 659, 913
NarI	GGCGCC	1 cut(s)	578
NciI	CCSGG	1 cut(s)	924
NdeI	CATATG	2 cut(s)	143, 903
NdeII	GATC	4 cut(s)	23, 87, 208, 217
NlaIII	CATG	6 cut(s)	79, 132, 463, 539, 595, 813
NlaIV	GGNNCC	1 cut(s)	579
NmuCI	GTSAC	2 cut(s)	439, 757
NspI	RCATGY	1 cut(s)	463
PagI	TCATGA	1 cut(s)	75
PciI	ACATGT	1 cut(s)	459
PctI	GAATGC	1 cut(s)	850
PdmI	GAANNNNTTC	2 cut(s)	528, 969
PfeI	GAWTC	4 cut(s)	37, 468, 524, 595
PkrI	GCNGC	2 cut(s)	478, 878
PleI	GAGTC	1 cut(s)	931
PluTI	GGCGCC	1 cut(s)	581
PpsI	GAGTC	1 cut(s)	931
PscI	ACATGT	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	665
PspGI	CCWGG	1 cut(s)	665
PspN4I	GGNNCC	1 cut(s)	579
PstI	CTGCAG	1 cut(s)	757
PstNI	CAGNNNCTG	3 cut(s)	100, 361, 797
PsuI	RGATCY	2 cut(s)	23, 87
RsaI	GTAC	1 cut(s)	946
RsaNI	GTAC	1 cut(s)	945
RseI	CAYNNNNRTG	1 cut(s)	74
SaqAI	TTAA	6 cut(s)	108, 189, 321, 456, 783, 981
SatI	GCNGC	2 cut(s)	477, 877
Sau3AI	GATC	4 cut(s)	23, 87, 208, 217
SchI	GAGTC	1 cut(s)	931
ScrFI	CCNGG	2 cut(s)	667, 924
SetI	ASST	9 cut(s)	163, 189, 340, 499, 644, 771, 783, 789, 884
SfaNI	GCATC	1 cut(s)	845
SfcI	CTRYAG	2 cut(s)	342, 753
SfoI	GGCGCC	1 cut(s)	579
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	2 cut(s)	182, 782
SmoI	CTYRAG	2 cut(s)	182, 782
Sse9I	AATT	5 cut(s)	423, 545, 633, 861, 965
SsiI	CCGC	1 cut(s)	858
SspDI	GGCGCC	1 cut(s)	577
SspMI	CTAG	3 cut(s)	518, 704, 933
StyD4I	CCNGG	2 cut(s)	665, 922
StyI	CCWWGG	1 cut(s)	932
TaaI	ACNGT	4 cut(s)	67, 346, 357, 565
TaiI	ACGT	2 cut(s)	771, 884
TaqI	TCGA	4 cut(s)	152, 207, 220, 996
TasI	AATT	5 cut(s)	423, 545, 633, 861, 965
TfiI	GAWTC	4 cut(s)	37, 468, 524, 595
Tru1I	TTAA	6 cut(s)	108, 189, 321, 456, 783, 981
Tru9I	TTAA	6 cut(s)	108, 189, 321, 456, 783, 981
TscAI	CASTG	4 cut(s)	50, 362, 634, 798
TseFI	GTSAC	2 cut(s)	439, 757
TseI	GCWGC	2 cut(s)	476, 876
Tsp45I	GTSAC	2 cut(s)	439, 757
TspDTI	ATGAA	5 cut(s)	92, 117, 130, 524, 857
TspGWI	ACGGA	1 cut(s)	812
TspRI	CASTG	4 cut(s)	50, 362, 634, 798
Vha464I	CTTAAG	1 cut(s)	782
XapI	RAATTY	3 cut(s)	423, 545, 633
XceI	RCATGY	1 cut(s)	463
XmaJI	CCTAGG	1 cut(s)	932
XmnI	GAANNNNTTC	2 cut(s)	528, 969
XspI	CTAG	3 cut(s)	518, 704, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.