Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014192

Physical Location & Seq

Genomic Coordinates Forward (+)

12587612 .. 12591469

Gene Structure 3858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011778

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGAGGAGTCTCGGCTGTGCCAGTGGAGCGTCATTAGATCTCTTCTGGCTGTTGTTCAATGGTGGGGATTCAATGTCACCGTTGTTGTCATGAACAAGTGGATCTTTCAGAAACTGGATTTTAAGTTTCCCTTAACCGTATCATGTGTGCATTTCATATGCTCGGCAATTGGGGCATACACGGTAATCAAGGTGTTGAAGCTTAAACCACTAATAGCAGTTGAGCCTGAAGATCGCTGGAAAAGGATATTTCCTATGTCATTCGTGTTCTGTATTAACATAGTGTTGGGGAATGTGAGCTTACGTTACATTCCAGTTTCTTTTATGCAAACGATTAAGTCATTCACTCCTGCGACCACAGTTTTTTTGCAGTGGCTGGTTTGGAGAAAGAGCTTTGACTGGCGAATTTGGGCTTCCTTGATACCCATTGTTGGAGGAATTCTTCTTACTTCTGTTACAGAGCTTAGTTTTAATATGCTTGGATTTTGTGCTGCCTTATTTGGTTGTCTGGCTACTTCCACGAAGACTATCCTTGCAGAGTCTCTGTTGCATGGATACAAGTTTGACAGCATAAACACTGTGTACTACATGGCACCTTTTGCAACCATGATCTTGGGAGTACCTGCTATGCTACTCGAAGGTAATGGAGTTCTTGAATGGCTTCACACCCATGAGACTCTTGTTCCATCCCTCACCATAATTTTCAGCTCTGGGGTATTGGCATTTTGTCTCAACTTCTCCATCTTCTATGTGATTCATTCCACTACCGCTGTAACATTCAATGTTGCTGGAAACCTCAAGGTTGCCGTTGCTGTCCTTGTTTCATGGATGATATTCCGAAACCCAATTTCCGGTATGAATGCTGTTGGATGTGGAGTAACCCTCGTGGGATGTACTTTCTATGGGTACATAAGACACCTGCTATCCCAACAGCTGCCAGGAGCTCCTCGAACACCCAGGACTCCACCCAAGACTCCTCGAGGTCGTATGGAGCTGCACCCCCTTGTAAATGATAAGTTAGATGACAAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005457 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015783 GO:0015786 GO:0015931 GO:0015932 GO:0022857 GO:0034220 GO:0036080 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072334 GO:0090480 GO:0090481 GO:0098656 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

345

Amino Acids

38.62

Weight (kDa)

9.31

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	15 - 301	2.6e-49	Triose-phosphate Transporter family
UAA	PF08449	15 - 301	9.5e-14	UAA transporter family
EamA	PF00892	28 - 151	4.8e-09	EamA-like transporter family
EamA	PF00892	160 - 300	3.5e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21870 AT1G77610
fragaria_vesca	FvH4_2g26800 FvH4_2g26800
malus_domestica	MD08G1164800.v1.1 MD15G1350800.v1.1
prunus_persica	Prupe.1G499700_v2.0.a1
pyrus_communis	pycom12654g00030 pycom15g31330
rosa_chinensis	RchiOBHm_Chr6g0295661
rosa_laevigata	RLG00000011778
rosa_multiflora	Rmu_sc0006802.1_g000008 Rmu_sc0015254.1_g000002
rosa_rugosa	Rorug06G0253200
rosa_samantha	Rh6CG380700 Rh6DG367600
rosa_wichuraiana	Rw6G031970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	927
AbsI	CCTCGAGG	1 cut(s)	978
Acc36I	ACCTGC	2 cut(s)	631, 927
AccB1I	GGYRCC	1 cut(s)	592
AciI	CCGC	1 cut(s)	768
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	2 cut(s)	405, 438
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	4 cut(s)	584, 621, 895, 908
AfiI	CCNNNNNNNGG	2 cut(s)	431, 851
AgsI	TTSAA	5 cut(s)	59, 73, 199, 656, 781
AjnI	CCWGG	2 cut(s)	937, 956
AluBI	AGCT	8 cut(s)	202, 300, 393, 463, 708, 934, 944, 994
AluI	AGCT	8 cut(s)	202, 300, 393, 463, 708, 934, 944, 994
Alw21I	GWGCWC	1 cut(s)	946
Alw26I	GTCTC	4 cut(s)	15, 546, 668, 734
AlwI	GGATC	1 cut(s)	110
AlwNI	CAGNNNCTG	2 cut(s)	115, 376
Ama87I	CYCGRG	1 cut(s)	978
ApeKI	GCWGC	3 cut(s)	491, 934, 994
ApoI	RAATTY	2 cut(s)	405, 438
Asp700I	GAANNNNTTC	1 cut(s)	660
AsuHPI	GGTGA	2 cut(s)	70, 685
AvaI	CYCGRG	1 cut(s)	978
BanI	GGYRCC	1 cut(s)	592
BanII	GRGCYC	1 cut(s)	946
BauI	CACGAG	1 cut(s)	884
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	946
BbvI	GCAGC	3 cut(s)	478, 921, 981
BccI	CCATC	2 cut(s)	694, 749
BceAI	ACGGC	1 cut(s)	791
BciT130I	CCWGG	2 cut(s)	939, 958
BciVI	GTATCC	1 cut(s)	548
BcoDI	GTCTC	4 cut(s)	15, 546, 668, 734
BfuAI	ACCTGC	2 cut(s)	631, 927
BfuI	GTATCC	1 cut(s)	548
BglII	AGATCT	1 cut(s)	38
BisI	GCNGC	3 cut(s)	492, 935, 995
BlsI	GCNGC	3 cut(s)	493, 936, 996
Bme1390I	CCNGG	2 cut(s)	939, 958
BmeT110I	CYCGRG	1 cut(s)	978
BmiI	GGNNCC	1 cut(s)	594
BmrFI	CCNGG	2 cut(s)	939, 958
BpiI	GAAGAC	1 cut(s)	530
BplI	GAGNNNNNCTC	2 cut(s)	867, 899
BpuEI	CTTGAG	1 cut(s)	782
BsaJI	CCNNGG	1 cut(s)	956
BsaWI	WCCGGW	1 cut(s)	851
Bsc4I	CCNNNNNNNGG	2 cut(s)	431, 851
Bse1I	ACTGG	4 cut(s)	22, 120, 314, 404
BseBI	CCWGG	2 cut(s)	939, 958
BseDI	CCNNGG	1 cut(s)	956
BseGI	GGATG	4 cut(s)	686, 834, 875, 896
BseLI	CCNNNNNNNGG	2 cut(s)	431, 851
BseNI	ACTGG	4 cut(s)	22, 120, 314, 404
BseRI	GAGGAG	3 cut(s)	20, 936, 966
BseXI	GCAGC	3 cut(s)	478, 921, 981
BsgI	GTGCAG	1 cut(s)	980
BshNI	GGYRCC	1 cut(s)	592
BsiHKAI	GWGCWC	1 cut(s)	946
BsiHKCI	CYCGRG	1 cut(s)	978
BsiSI	CCGG	1 cut(s)	852
BslI	CCNNNNNNNGG	2 cut(s)	431, 851
BsmAI	GTCTC	4 cut(s)	15, 546, 668, 734
BsmI	GAATGC	1 cut(s)	865
BsoBI	CYCGRG	1 cut(s)	978
Bsp1286I	GDGCHC	1 cut(s)	946
Bsp143I	GATC	4 cut(s)	38, 102, 232, 609
BspACI	CCGC	1 cut(s)	768
BspHI	TCATGA	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	594
BspMI	ACCTGC	2 cut(s)	631, 927
BspPI	GGATC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	592
BsrI	ACTGG	4 cut(s)	22, 120, 314, 404
BssECI	CCNNGG	1 cut(s)	956
BssMI	GATC	4 cut(s)	38, 102, 232, 609
BssSI	CACGAG	1 cut(s)	884
Bst2BI	CACGAG	1 cut(s)	884
Bst2UI	CCWGG	2 cut(s)	939, 958
Bst4CI	ACNGT	5 cut(s)	82, 139, 184, 361, 580
Bst6I	CTCTTC	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstDEI	CTNAG	1 cut(s)	464
BstF5I	GGATG	4 cut(s)	686, 834, 875, 896
BstKTI	GATC	4 cut(s)	41, 105, 235, 612
BstMAI	GTCTC	4 cut(s)	15, 546, 668, 734
BstMBI	GATC	4 cut(s)	38, 102, 232, 609
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 173, 599
BstNI	CCWGG	2 cut(s)	939, 958
BstSCI	CCNGG	2 cut(s)	937, 956
BstV1I	GCAGC	3 cut(s)	478, 921, 981
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	2 cut(s)	38, 102
BstXI	CCANNNNNNTGG	1 cut(s)	613
BstYI	RGATCY	2 cut(s)	38, 102
BsuI	GTATCC	1 cut(s)	548
BtsCI	GGATG	4 cut(s)	686, 834, 875, 896
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	3 cut(s)	29, 377, 576
BveI	ACCTGC	2 cut(s)	631, 927
CaiI	CAGNNNCTG	2 cut(s)	115, 376
CciI	TCATGA	1 cut(s)	90
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	4 cut(s)	583, 620, 894, 907
CviAII	CATG	7 cut(s)	91, 144, 551, 589, 607, 671, 825
CviQI	GTAC	4 cut(s)	583, 620, 894, 907
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	4 cut(s)	40, 104, 234, 611
DpnII	GATC	4 cut(s)	38, 102, 232, 609
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	944
Eco24I	GRGCYC	1 cut(s)	946
Eco53kI	GAGCTC	1 cut(s)	944
Eco57I	CTGAAG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	978
EcoICRI	GAGCTC	1 cut(s)	944
EcoRI	GAATTC	1 cut(s)	438
EcoRII	CCWGG	2 cut(s)	937, 956
EcoT38I	GRGCYC	1 cut(s)	946
FaeI	CATG	7 cut(s)	94, 147, 554, 592, 610, 674, 828
FalI	AAGNNNNNCTT	4 cut(s)	89, 121, 116, 148
FatI	CATG	7 cut(s)	90, 143, 550, 588, 606, 670, 824
FauNDI	CATATG	1 cut(s)	158
Fnu4HI	GCNGC	3 cut(s)	492, 935, 995
FokI	GGATG	4 cut(s)	673, 841, 882, 903
FriOI	GRGCYC	1 cut(s)	946
Fsp4HI	GCNGC	3 cut(s)	492, 935, 995
GluI	GCNGC	3 cut(s)	492, 935, 995
HapII	CCGG	1 cut(s)	852
HgaI	GACGC	1 cut(s)	19
Hin1II	CATG	7 cut(s)	94, 147, 554, 592, 610, 674, 828
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	7 cut(s)	8, 69, 539, 676, 754, 961, 973
HpaII	CCGG	1 cut(s)	852
HphI	GGTGA	2 cut(s)	70, 685
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	3 cut(s)	111, 839, 1034
Hpy188III	TCNNGA	2 cut(s)	91, 653
Hpy8I	GTNNAC	1 cut(s)	583
HpyAV	CCTTC	1 cut(s)	632
HpyCH4III	ACNGT	5 cut(s)	82, 139, 184, 361, 580
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	7 cut(s)	151, 328, 370, 536, 550, 602, 997
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 173, 599
HpyF3I	CTNAG	1 cut(s)	464
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	7 cut(s)	94, 147, 554, 592, 610, 674, 828
Kzo9I	GATC	4 cut(s)	38, 102, 232, 609
LmnI	GCTCC	4 cut(s)	27, 941, 949, 991
Lsp1109I	GCAGC	3 cut(s)	478, 921, 981
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	5 cut(s)	76, 305, 454, 772, 877
MalI	GATC	4 cut(s)	40, 104, 234, 611
MboI	GATC	4 cut(s)	38, 102, 232, 609
MboII	GAAGA	5 cut(s)	35, 242, 434, 535, 736
MfeI	CAATTG	1 cut(s)	168
MflI	RGATCY	2 cut(s)	38, 102
MhlI	GDGCHC	1 cut(s)	946
MluCI	AATT	5 cut(s)	168, 405, 438, 699, 846
MlyI	GAGTC	5 cut(s)	17, 548, 670, 955, 967
MmeI	TCCRAC	2 cut(s)	412, 847
MnlI	CCTC	7 cut(s)	428, 701, 806, 893, 957, 974, 987
MroXI	GAANNNNTTC	1 cut(s)	660
MseI	TTAA	6 cut(s)	123, 134, 204, 276, 336, 471
MslI	CAYNNNNRTG	1 cut(s)	669
MspA1I	CMGCKG	2 cut(s)	770, 934
MspI	CCGG	1 cut(s)	852
MspR9I	CCNGG	2 cut(s)	939, 958
MunI	CAATTG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	865
MvaI	CCWGG	2 cut(s)	939, 958
MwoI	GCNNNNNNNGC	3 cut(s)	27, 173, 599
NdeI	CATATG	1 cut(s)	158
NdeII	GATC	4 cut(s)	38, 102, 232, 609
NlaIII	CATG	7 cut(s)	94, 147, 554, 592, 610, 674, 828
NlaIV	GGNNCC	1 cut(s)	594
NmeAIII	GCCGAG	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	978
PagI	TCATGA	1 cut(s)	90
PaqCI	CACCTGC	1 cut(s)	927
PctI	GAATGC	1 cut(s)	865
PdmI	GAANNNNTTC	1 cut(s)	660
PfeI	GAWTC	2 cut(s)	69, 754
PflFI	GACNNNGTC	1 cut(s)	1028
PkrI	GCNGC	3 cut(s)	493, 936, 996
PleI	GAGTC	5 cut(s)	16, 547, 670, 955, 967
PpsI	GAGTC	5 cut(s)	16, 547, 670, 955, 967
Psp124BI	GAGCTC	1 cut(s)	946
Psp6I	CCWGG	2 cut(s)	937, 956
PspGI	CCWGG	2 cut(s)	937, 956
PspN4I	GGNNCC	1 cut(s)	594
PspXI	VCTCGAGB	1 cut(s)	978
PstNI	CAGNNNCTG	2 cut(s)	115, 376
PsuI	RGATCY	2 cut(s)	38, 102
PsyI	GACNNNGTC	1 cut(s)	1028
PvuII	CAGCTG	1 cut(s)	934
RsaI	GTAC	4 cut(s)	584, 621, 895, 908
RsaNI	GTAC	4 cut(s)	583, 620, 894, 907
RseI	CAYNNNNRTG	1 cut(s)	669
SacI	GAGCTC	1 cut(s)	946
SaqAI	TTAA	6 cut(s)	123, 134, 204, 276, 336, 471
SatI	GCNGC	3 cut(s)	492, 935, 995
Sau3AI	GATC	4 cut(s)	38, 102, 232, 609
SchI	GAGTC	5 cut(s)	17, 548, 670, 955, 967
ScrFI	CCNGG	2 cut(s)	939, 958
SduI	GDGCHC	1 cut(s)	946
Sfr274I	CTCGAG	1 cut(s)	978
SlaI	CTCGAG	1 cut(s)	978
SmiMI	CAYNNNNRTG	1 cut(s)	669
SmlI	CTYRAG	2 cut(s)	797, 978
SmoI	CTYRAG	2 cut(s)	797, 978
Sse9I	AATT	5 cut(s)	168, 405, 438, 699, 846
SsiI	CCGC	1 cut(s)	768
SstI	GAGCTC	1 cut(s)	946
StyD4I	CCNGG	2 cut(s)	937, 956
TaaI	ACNGT	5 cut(s)	82, 139, 184, 361, 580
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	3 cut(s)	636, 949, 979
TasI	AATT	5 cut(s)	168, 405, 438, 699, 846
TatI	WGTACW	2 cut(s)	582, 893
TfiI	GAWTC	2 cut(s)	69, 754
Tru1I	TTAA	6 cut(s)	123, 134, 204, 276, 336, 471
Tru9I	TTAA	6 cut(s)	123, 134, 204, 276, 336, 471
TscAI	CASTG	3 cut(s)	29, 377, 583
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	3 cut(s)	491, 934, 994
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	5 cut(s)	107, 145, 746, 813, 872
TspRI	CASTG	3 cut(s)	29, 377, 583
Tth111I	GACNNNGTC	1 cut(s)	1028
XapI	RAATTY	2 cut(s)	405, 438
XhoI	CTCGAG	1 cut(s)	978
XmnI	GAANNNNTTC	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.