Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012654

Orthogroup ID

OG0014192

Physical Location & Seq

Genomic Coordinates Forward (+)

26839 .. 30484

Gene Structure 3646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12654g00030.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAGGAGTCTTGGCTGTGCCAGTGGAGCGTCATTAGATCTCTCCTCGCAATTCTTCAATGGTGGGGTTTCAATGTCACCGTGATTGTCATGAACAAGTGGATCTTTCAGAAACTGGATTTTAAGTTTCCCCTAACGGTGTCATGCATTCATTTCATATGCTCGGCCATTGGAGCATACATTGTAATCAAGGTTTTGAAACTTAAACCACTAATAACAGTTGACCCTGAAGATCGCTGGAGAAGAATATTTCCCATGTCATTTGTGTTCTGTATTAACATAGTGTTGGGCAATGTGAGCTTACGTTACATTCCAGTTTCCTTTATGCAGACCATAAAGTCGTTCACTCCTGCAACCACAGTTGTTTTGCAGTGGCTGGTCTGGAGAAAGTACTTTGATTGGAGAATTTGGTGTTCTTTGATACCCATTGTTGGAGGAATTCTACTTACCTCTGCTACAGAGCTTAGTTTCAATATGTTTGGATTTTGTGCTGCCTTATTTGGTTGTCTCGCTACTTCCACAAAGACCATCCTTGCAGAATCTCTTTTGCATGGATACAAATTTGACAGCATAAACACGGTGTACTACATGGCACCTTTTGCGACCATGATCTTGGCGGTACCTGCAATGCTACTCGAAGGTAATGGGGTTATTGAATGGCTTCATACCCATCAGACTCTTGTTCCATCCCTCGTCATCATTTTCAGCTCCGGGGTACTGGCGTTTTGTCTCAACTTCTCCATATTTTACGTGATTCATTCTACAACTGCCGTAACATTCAACGTTGCTGGAAACCTCAAGGTTGCTGTTGCCGTCCTTGTTTCATGGATGATATTCAAAAACCCAATTCCAGCTTTGAACGCCGTTGGTTGTGGAATAACGCTTTTGGGATGTACATTCTATGGGTACGTGAGGCATCTGATCTCCCAGCAGCTGCCTGGAACTCCTCGAACGCCGCGGACTCCACGGGGTCGTATGGAGCTGCTTCCCCTCGTAAATGATAAATTAGATGACAAGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005457 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015783 GO:0015786 GO:0015931 GO:0015932 GO:0022857 GO:0034220 GO:0036080 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072334 GO:0090480 GO:0090481 GO:0098656 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

341

Amino Acids

38.41

Weight (kDa)

9.18

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21870 AT1G77610
fragaria_vesca	FvH4_2g26800 FvH4_2g26800
malus_domestica	MD08G1164800.v1.1 MD15G1350800.v1.1
prunus_persica	Prupe.1G499700_v2.0.a1
pyrus_communis	pycom12654g00030 pycom15g31330
rosa_chinensis	RchiOBHm_Chr6g0295661
rosa_laevigata	RLG00000011778
rosa_multiflora	Rmu_sc0006802.1_g000008 Rmu_sc0015254.1_g000002
rosa_rugosa	Rorug06G0253200
rosa_samantha	Rh6CG380700 Rh6DG367600
rosa_wichuraiana	Rw6G031970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	337
Acc36I	ACCTGC	1 cut(s)	631
Acc65I	GGTACC	1 cut(s)	619
AccB1I	GGYRCC	2 cut(s)	592, 619
AccII	CGCG	1 cut(s)	958
AciI	CCGC	3 cut(s)	617, 956, 958
AclI	AACGTT	1 cut(s)	783
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	3 cut(s)	405, 438, 560
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	6 cut(s)	392, 584, 621, 717, 895, 908
AfiI	CCNNNNNNNGG	1 cut(s)	431
AgsI	TTSAA	8 cut(s)	59, 73, 199, 472, 656, 781, 838, 859
AjnI	CCWGG	1 cut(s)	937
AluBI	AGCT	6 cut(s)	300, 463, 708, 854, 934, 982
AluI	AGCT	6 cut(s)	300, 463, 708, 854, 934, 982
Alw26I	GTCTC	2 cut(s)	512, 734
AlwI	GGATC	1 cut(s)	110
AlwNI	CAGNNNCTG	3 cut(s)	115, 376, 934
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	4 cut(s)	491, 931, 934, 982
ApoI	RAATTY	3 cut(s)	405, 438, 560
Asp700I	GAANNNNTTC	1 cut(s)	660
Asp718I	GGTACC	1 cut(s)	619
AsuC2I	CCSGG	1 cut(s)	712
AsuHPI	GGTGA	1 cut(s)	70
BaeI	ACNNNNGTAYC	2 cut(s)	707, 740
BanI	GGYRCC	2 cut(s)	592, 619
BbvI	GCAGC	4 cut(s)	478, 921, 943, 969
BccI	CCATC	3 cut(s)	536, 678, 694
BceAI	ACGGC	3 cut(s)	755, 797, 848
BciT130I	CCWGG	1 cut(s)	939
BciVI	GTATCC	1 cut(s)	548
BcnI	CCSGG	1 cut(s)	712
BcoDI	GTCTC	2 cut(s)	512, 734
BfaI	CTAG	1 cut(s)	1021
BfmI	CTRYAG	1 cut(s)	456
BfuAI	ACCTGC	1 cut(s)	631
BfuI	GTATCC	1 cut(s)	548
BglII	AGATCT	1 cut(s)	38
BisI	GCNGC	5 cut(s)	492, 932, 935, 956, 983
BlsI	GCNGC	5 cut(s)	493, 933, 936, 957, 984
BmcAI	AGTACT	1 cut(s)	392
Bme1390I	CCNGG	2 cut(s)	712, 939
BmiI	GGNNCC	2 cut(s)	594, 621
BmrFI	CCNGG	2 cut(s)	712, 939
BmsI	GCATC	1 cut(s)	925
BpmI	CTGGAG	2 cut(s)	259, 403
BpuEI	CTTGAG	1 cut(s)	782
BpuMI	CCSGG	1 cut(s)	712
BsaAI	YACGTR	2 cut(s)	751, 910
BsaJI	CCNNGG	3 cut(s)	711, 956, 965
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse1I	ACTGG	4 cut(s)	22, 120, 314, 723
Bse3DI	GCAATG	2 cut(s)	298, 633
BseBI	CCWGG	1 cut(s)	939
BseDI	CCNNGG	3 cut(s)	711, 956, 965
BseGI	GGATG	4 cut(s)	528, 686, 834, 896
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMI	GCAATG	2 cut(s)	298, 633
BseNI	ACTGG	4 cut(s)	22, 120, 314, 723
BseRI	GAGGAG	3 cut(s)	20, 35, 936
BseXI	GCAGC	4 cut(s)	478, 921, 943, 969
BseYI	CCCAGC	1 cut(s)	927
Bsh1236I	CGCG	1 cut(s)	958
BshFI	GGCC	1 cut(s)	167
BshNI	GGYRCC	2 cut(s)	592, 619
BsiSI	CCGG	1 cut(s)	711
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	2 cut(s)	512, 734
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	167
Bsp1407I	TGTACA	1 cut(s)	893
Bsp143I	GATC	5 cut(s)	38, 102, 232, 609, 921
BspACI	CCGC	3 cut(s)	617, 956, 958
BspANI	GGCC	1 cut(s)	167
BspFNI	CGCG	1 cut(s)	958
BspHI	TCATGA	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	594, 621
BspMI	ACCTGC	1 cut(s)	631
BspPI	GGATC	1 cut(s)	110
BspT107I	GGYRCC	2 cut(s)	592, 619
BsrDI	GCAATG	2 cut(s)	298, 633
BsrGI	TGTACA	1 cut(s)	893
BsrI	ACTGG	4 cut(s)	22, 120, 314, 723
BssECI	CCNNGG	3 cut(s)	711, 956, 965
BssMI	GATC	5 cut(s)	38, 102, 232, 609, 921
Bst2UI	CCWGG	1 cut(s)	939
Bst4CI	ACNGT	5 cut(s)	82, 139, 220, 361, 580
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstAUI	TGTACA	1 cut(s)	893
BstBAI	YACGTR	2 cut(s)	751, 910
BstDEI	CTNAG	1 cut(s)	464
BstDSI	CCRYGG	2 cut(s)	956, 965
BstF5I	GGATG	4 cut(s)	528, 686, 834, 896
BstFNI	CGCG	1 cut(s)	958
BstKTI	GATC	5 cut(s)	41, 105, 235, 612, 924
BstMAI	GTCTC	2 cut(s)	512, 734
BstMBI	GATC	5 cut(s)	38, 102, 232, 609, 921
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 173, 297, 599, 623, 860
BstNI	CCWGG	1 cut(s)	939
BstSCI	CCNGG	2 cut(s)	710, 937
BstSFI	CTRYAG	1 cut(s)	456
BstUI	CGCG	1 cut(s)	958
BstV1I	GCAGC	4 cut(s)	478, 921, 943, 969
BstX2I	RGATCY	2 cut(s)	38, 102
BstXI	CCANNNNNNTGG	1 cut(s)	613
BstYI	RGATCY	2 cut(s)	38, 102
BsuI	GTATCC	1 cut(s)	548
BsuRI	GGCC	1 cut(s)	167
BtgI	CCRYGG	2 cut(s)	956, 965
BtsCI	GGATG	4 cut(s)	528, 686, 834, 896
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	2 cut(s)	29, 377
BveI	ACCTGC	1 cut(s)	631
CaiI	CAGNNNCTG	3 cut(s)	115, 376, 934
CciI	TCATGA	1 cut(s)	90
Cfr42I	CCGCGG	1 cut(s)	959
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	6 cut(s)	391, 583, 620, 716, 894, 907
CviAII	CATG	7 cut(s)	91, 144, 256, 551, 589, 607, 825
CviQI	GTAC	6 cut(s)	391, 583, 620, 716, 894, 907
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	5 cut(s)	40, 104, 234, 611, 923
DpnII	GATC	5 cut(s)	38, 102, 232, 609, 921
DrdI	GACNNNNNNGTC	1 cut(s)	337
DseDI	GACNNNNNNGTC	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	937
EcoT22I	ATGCAT	1 cut(s)	149
FaeI	CATG	7 cut(s)	94, 147, 259, 554, 592, 610, 828
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FatI	CATG	7 cut(s)	90, 143, 255, 550, 588, 606, 824
FauNDI	CATATG	1 cut(s)	158
Fnu4HI	GCNGC	5 cut(s)	492, 932, 935, 956, 983
FokI	GGATG	4 cut(s)	515, 673, 841, 903
Fsp4HI	GCNGC	5 cut(s)	492, 932, 935, 956, 983
FspBI	CTAG	1 cut(s)	1021
GluI	GCNGC	5 cut(s)	492, 932, 935, 956, 983
GsaI	CCCAGC	1 cut(s)	931
GsuI	CTGGAG	2 cut(s)	259, 403
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	711
HgaI	GACGC	1 cut(s)	19
Hin1II	CATG	7 cut(s)	94, 147, 259, 554, 592, 610, 828
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	5 cut(s)	8, 539, 676, 754, 961
HpaII	CCGG	1 cut(s)	711
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	3 cut(s)	223, 345, 583
Hpy188I	TCNGA	3 cut(s)	111, 675, 921
Hpy188III	TCNNGA	2 cut(s)	91, 382
Hpy8I	GTNNAC	3 cut(s)	223, 345, 583
HpyAV	CCTTC	1 cut(s)	632
HpyCH4III	ACNGT	5 cut(s)	82, 139, 220, 361, 580
HpyCH4IV	ACGT	4 cut(s)	304, 750, 783, 909
HpyCH4V	TGCA	7 cut(s)	147, 328, 353, 370, 536, 550, 626
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 173, 297, 599, 623, 860
HpyF3I	CTNAG	1 cut(s)	464
HpySE526I	ACGT	4 cut(s)	304, 750, 783, 909
Hsp92II	CATG	7 cut(s)	94, 147, 259, 554, 592, 610, 828
KpnI	GGTACC	1 cut(s)	623
KspI	CCGCGG	1 cut(s)	959
Kzo9I	GATC	5 cut(s)	38, 102, 232, 609, 921
LmnI	GCTCC	4 cut(s)	27, 173, 713, 979
Lsp1109I	GCAGC	4 cut(s)	478, 921, 943, 969
LweI	GCATC	1 cut(s)	925
MaeI	CTAG	1 cut(s)	1021
MaeII	ACGT	4 cut(s)	304, 750, 783, 909
MaeIII	GTNAC	3 cut(s)	76, 305, 772
MalI	GATC	5 cut(s)	40, 104, 234, 611, 923
MboI	GATC	5 cut(s)	38, 102, 232, 609, 921
MboII	GAAGA	3 cut(s)	47, 242, 255
MflI	RGATCY	2 cut(s)	38, 102
MluCI	AATT	6 cut(s)	51, 405, 438, 560, 846, 1004
MlyI	GAGTC	3 cut(s)	17, 670, 955
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	8 cut(s)	56, 428, 460, 701, 806, 906, 957, 1001
Mph1103I	ATGCAT	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	660
MseI	TTAA	3 cut(s)	123, 204, 276
MspA1I	CMGCKG	2 cut(s)	934, 958
MspI	CCGG	1 cut(s)	711
MspR9I	CCNGG	2 cut(s)	712, 939
Mva1269I	GAATGC	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	939
MvnI	CGCG	1 cut(s)	958
MwoI	GCNNNNNNNGC	6 cut(s)	27, 173, 297, 599, 623, 860
NciI	CCSGG	1 cut(s)	712
NdeI	CATATG	1 cut(s)	158
NdeII	GATC	5 cut(s)	38, 102, 232, 609, 921
NlaIII	CATG	7 cut(s)	94, 147, 259, 554, 592, 610, 828
NlaIV	GGNNCC	2 cut(s)	594, 621
NmeAIII	GCCGAG	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	76
NsiI	ATGCAT	1 cut(s)	149
PagI	TCATGA	1 cut(s)	90
PctI	GAATGC	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	660
PfeI	GAWTC	2 cut(s)	539, 754
PflFI	GACNNNGTC	1 cut(s)	1016
PkrI	GCNGC	5 cut(s)	493, 933, 936, 957, 984
PleI	GAGTC	3 cut(s)	16, 670, 955
PpsI	GAGTC	3 cut(s)	16, 670, 955
Ppu21I	YACGTR	2 cut(s)	751, 910
Psp1406I	AACGTT	1 cut(s)	783
Psp6I	CCWGG	1 cut(s)	937
PspFI	CCCAGC	1 cut(s)	927
PspGI	CCWGG	1 cut(s)	937
PspN4I	GGNNCC	2 cut(s)	594, 621
PstNI	CAGNNNCTG	3 cut(s)	115, 376, 934
PsuI	RGATCY	2 cut(s)	38, 102
PsyI	GACNNNGTC	1 cut(s)	1016
PvuII	CAGCTG	1 cut(s)	934
RsaI	GTAC	6 cut(s)	392, 584, 621, 717, 895, 908
RsaNI	GTAC	6 cut(s)	391, 583, 620, 716, 894, 907
SacII	CCGCGG	1 cut(s)	959
SaqAI	TTAA	3 cut(s)	123, 204, 276
SatI	GCNGC	5 cut(s)	492, 932, 935, 956, 983
Sau3AI	GATC	5 cut(s)	38, 102, 232, 609, 921
ScaI	AGTACT	1 cut(s)	392
SchI	GAGTC	3 cut(s)	17, 670, 955
ScrFI	CCNGG	2 cut(s)	712, 939
SfaNI	GCATC	1 cut(s)	925
SfcI	CTRYAG	1 cut(s)	456
Sfr303I	CCGCGG	1 cut(s)	959
SgrBI	CCGCGG	1 cut(s)	959
SmlI	CTYRAG	1 cut(s)	797
SmoI	CTYRAG	1 cut(s)	797
Sse9I	AATT	6 cut(s)	51, 405, 438, 560, 846, 1004
SsiI	CCGC	3 cut(s)	617, 956, 958
SspI	AATATT	1 cut(s)	249
SspMI	CTAG	1 cut(s)	1021
StyD4I	CCNGG	2 cut(s)	710, 937
TaaI	ACNGT	5 cut(s)	82, 139, 220, 361, 580
TaiI	ACGT	4 cut(s)	307, 753, 786, 912
TaqI	TCGA	2 cut(s)	636, 949
TasI	AATT	6 cut(s)	51, 405, 438, 560, 846, 1004
TatI	WGTACW	3 cut(s)	390, 582, 893
TauI	GCSGC	1 cut(s)	958
TfiI	GAWTC	2 cut(s)	539, 754
Tru1I	TTAA	3 cut(s)	123, 204, 276
Tru9I	TTAA	3 cut(s)	123, 204, 276
TscAI	CASTG	2 cut(s)	29, 377
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	4 cut(s)	491, 931, 934, 982
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	6 cut(s)	107, 140, 145, 653, 746, 813
TspRI	CASTG	2 cut(s)	29, 377
Tth111I	GACNNNGTC	1 cut(s)	1016
XapI	RAATTY	3 cut(s)	405, 438, 560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	935
XmnI	GAANNNNTTC	1 cut(s)	660
XspI	CTAG	1 cut(s)	1021
ZrmI	AGTACT	1 cut(s)	392
Zsp2I	ATGCAT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.