Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015254.1

Orthogroup ID

OG0014192

Physical Location & Seq

Genomic Coordinates Reverse (-)

6312 .. 9645

Gene Structure 3334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015254.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atggaggagtctcggctgttgtgccagtggaccgtcattagatctcttctggctgttcttcaatggtggggattcaatgtcaccgttgttgtcatgaacaagtggatctttcagaaactggattttaagtttcccttaactgtatcatgtgtgcatttcatatgctcggcaattggggcatacacggtaatcaaggtgttgaagcttaaaccactaatagcagttgagcctgaagatcgctggaaaaggatatttcctatgtcattcgtgttctgtattaacatagtgttggggaatgtgagcttacgttacattccagtttcttttatgcaaacgattaagtcattcactcctgcgaccacagtttttttgcagtggctggtttggagaaagagctttgactggcgaatttgggcttccttgatacccattgttggaggaattcttcttacttctgttacagagcttagttttaataagcttggattttgtgctgccttatttggttgtctggctacttccacaaagactatccttgcagagtctctgttgcatggatacaagtttgacagcataaacactgtgtactacatggcaccttttgcaaccatgatcttgggagtacctgctatgctactcgaaggtaatggagttcttgaatggcttcacacccatgagactcttgttccatccctcaccataattttcagctctggggtattggcattttgtctcaacttctccatcttctatgtgattcattccactactgctgtaacattcaatgttgctggaaacctcaaggttgctgttgctgtccttgtttcatggatgatattccgaaacccaatttccggtatgaatgctgttggatgtggagtaaccctcgtgggatgtactttctatgggtacataagacacctgctatcccaacagctgccaggagctcctcgaacacccaggactccacccaagactccacgaggtcgtatggagctgcaccctctagtaaatgataagttagatgacaaggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005457 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0008514 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015783 GO:0015786 GO:0015931 GO:0015932 GO:0022857 GO:0034220 GO:0036080 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072334 GO:0090480 GO:0090481 GO:0098656 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

345

Amino Acids

38.75

Weight (kDa)

9.38

Isoelectric Point (pI)

32.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21870 AT1G77610
fragaria_vesca	FvH4_2g26800 FvH4_2g26800
malus_domestica	MD08G1164800.v1.1 MD15G1350800.v1.1
prunus_persica	Prupe.1G499700_v2.0.a1
pyrus_communis	pycom12654g00030 pycom15g31330
rosa_chinensis	RchiOBHm_Chr6g0295661
rosa_laevigata	RLG00000011778
rosa_multiflora	Rmu_sc0006802.1_g000008 Rmu_sc0015254.1_g000002
rosa_rugosa	Rorug06G0253200
rosa_samantha	Rh6CG380700 Rh6DG367600
rosa_wichuraiana	Rw6G031970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	930
Acc36I	ACCTGC	2 cut(s)	634, 930
AccB1I	GGYRCC	1 cut(s)	595
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	2 cut(s)	408, 441
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	4 cut(s)	587, 624, 898, 911
AfiI	CCNNNNNNNGG	2 cut(s)	434, 854
AgsI	TTSAA	5 cut(s)	62, 76, 202, 659, 784
AjnI	CCWGG	2 cut(s)	940, 959
AluBI	AGCT	9 cut(s)	205, 303, 396, 466, 481, 711, 937, 947, 997
AluI	AGCT	9 cut(s)	205, 303, 396, 466, 481, 711, 937, 947, 997
Alw21I	GWGCWC	1 cut(s)	949
Alw26I	GTCTC	4 cut(s)	15, 549, 671, 737
AlwI	GGATC	1 cut(s)	113
AlwNI	CAGNNNCTG	2 cut(s)	118, 379
ApeKI	GCWGC	3 cut(s)	494, 937, 997
ApoI	RAATTY	2 cut(s)	408, 441
Asp700I	GAANNNNTTC	1 cut(s)	663
AspS9I	GGNCC	1 cut(s)	30
AsuHPI	GGTGA	2 cut(s)	73, 688
AvaII	GGWCC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	595
BanII	GRGCYC	1 cut(s)	949
BauI	CACGAG	2 cut(s)	887, 981
Bbv12I	GWGCWC	1 cut(s)	949
BbvI	GCAGC	3 cut(s)	481, 924, 984
BccI	CCATC	2 cut(s)	697, 752
BciT130I	CCWGG	2 cut(s)	942, 961
BciVI	GTATCC	1 cut(s)	551
BcoDI	GTCTC	4 cut(s)	15, 549, 671, 737
BfaI	CTAG	1 cut(s)	1007
BfuAI	ACCTGC	2 cut(s)	634, 930
BfuI	GTATCC	1 cut(s)	551
BglII	AGATCT	1 cut(s)	41
BisI	GCNGC	3 cut(s)	495, 938, 998
BlsI	GCNGC	3 cut(s)	496, 939, 999
Bme1390I	CCNGG	2 cut(s)	942, 961
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	597
BmrFI	CCNGG	2 cut(s)	942, 961
BplI	GAGNNNNNCTC	2 cut(s)	870, 902
BpuEI	CTTGAG	1 cut(s)	785
BsaJI	CCNNGG	1 cut(s)	959
BsaWI	WCCGGW	1 cut(s)	854
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 854
Bse1I	ACTGG	4 cut(s)	25, 123, 317, 407
BseBI	CCWGG	2 cut(s)	942, 961
BseDI	CCNNGG	1 cut(s)	959
BseGI	GGATG	4 cut(s)	689, 837, 878, 899
BseLI	CCNNNNNNNGG	2 cut(s)	434, 854
BseNI	ACTGG	4 cut(s)	25, 123, 317, 407
BseRI	GAGGAG	2 cut(s)	20, 939
BseXI	GCAGC	3 cut(s)	481, 924, 984
BsgI	GTGCAG	1 cut(s)	983
BshNI	GGYRCC	1 cut(s)	595
BsiHKAI	GWGCWC	1 cut(s)	949
BsiSI	CCGG	1 cut(s)	855
BslI	CCNNNNNNNGG	2 cut(s)	434, 854
BsmAI	GTCTC	4 cut(s)	15, 549, 671, 737
BsmI	GAATGC	1 cut(s)	868
Bsp1286I	GDGCHC	1 cut(s)	949
Bsp143I	GATC	4 cut(s)	41, 105, 235, 612
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	597
BspMI	ACCTGC	2 cut(s)	634, 930
BspPI	GGATC	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	595
BsrI	ACTGG	4 cut(s)	25, 123, 317, 407
BssECI	CCNNGG	1 cut(s)	959
BssMI	GATC	4 cut(s)	41, 105, 235, 612
BssSI	CACGAG	2 cut(s)	887, 981
Bst2BI	CACGAG	2 cut(s)	887, 981
Bst2UI	CCWGG	2 cut(s)	942, 961
Bst4CI	ACNGT	6 cut(s)	34, 85, 142, 187, 364, 583
Bst6I	CTCTTC	1 cut(s)	51
BstAPI	GCANNNNNTGC	1 cut(s)	602
BstDEI	CTNAG	1 cut(s)	467
BstF5I	GGATG	4 cut(s)	689, 837, 878, 899
BstKTI	GATC	4 cut(s)	44, 108, 238, 615
BstMAI	GTCTC	4 cut(s)	15, 549, 671, 737
BstMBI	GATC	4 cut(s)	41, 105, 235, 612
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 602
BstNI	CCWGG	2 cut(s)	942, 961
BstSCI	CCNGG	2 cut(s)	940, 959
BstV1I	GCAGC	3 cut(s)	481, 924, 984
BstX2I	RGATCY	2 cut(s)	41, 105
BstXI	CCANNNNNNTGG	1 cut(s)	616
BstYI	RGATCY	2 cut(s)	41, 105
BsuI	GTATCC	1 cut(s)	551
BtsCI	GGATG	4 cut(s)	689, 837, 878, 899
BtsI	GCAGTG	1 cut(s)	380
BtsIMutI	CAGTG	3 cut(s)	32, 380, 579
BveI	ACCTGC	2 cut(s)	634, 930
CaiI	CAGNNNCTG	2 cut(s)	118, 379
CciI	TCATGA	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	30
Csp6I	GTAC	4 cut(s)	586, 623, 897, 910
CviAII	CATG	7 cut(s)	94, 147, 554, 592, 610, 674, 828
CviQI	GTAC	4 cut(s)	586, 623, 897, 910
DdeI	CTNAG	1 cut(s)	467
DpnI	GATC	4 cut(s)	43, 107, 237, 614
DpnII	GATC	4 cut(s)	41, 105, 235, 612
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	947
Eco24I	GRGCYC	1 cut(s)	949
Eco47I	GGWCC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	947
Eco57I	CTGAAG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	947
EcoRI	GAATTC	1 cut(s)	441
EcoRII	CCWGG	2 cut(s)	940, 959
EcoT38I	GRGCYC	1 cut(s)	949
FaeI	CATG	7 cut(s)	97, 150, 557, 595, 613, 677, 831
FalI	AAGNNNNNCTT	4 cut(s)	92, 124, 119, 151
FatI	CATG	7 cut(s)	93, 146, 553, 591, 609, 673, 827
FauNDI	CATATG	1 cut(s)	161
Fnu4HI	GCNGC	3 cut(s)	495, 938, 998
FokI	GGATG	4 cut(s)	676, 844, 885, 906
FriOI	GRGCYC	1 cut(s)	949
Fsp4HI	GCNGC	3 cut(s)	495, 938, 998
FspBI	CTAG	1 cut(s)	1007
GluI	GCNGC	3 cut(s)	495, 938, 998
HapII	CCGG	1 cut(s)	855
Hin1II	CATG	7 cut(s)	97, 150, 557, 595, 613, 677, 831
HindIII	AAGCTT	2 cut(s)	203, 479
HinfI	GANTC	7 cut(s)	8, 72, 542, 679, 757, 964, 976
HpaII	CCGG	1 cut(s)	855
HphI	GGTGA	2 cut(s)	73, 688
Hpy166II	GTNNAC	2 cut(s)	30, 586
Hpy188I	TCNGA	3 cut(s)	114, 842, 1037
Hpy188III	TCNNGA	2 cut(s)	94, 656
Hpy8I	GTNNAC	2 cut(s)	30, 586
HpyAV	CCTTC	1 cut(s)	635
HpyCH4III	ACNGT	6 cut(s)	34, 85, 142, 187, 364, 583
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	7 cut(s)	154, 331, 373, 539, 553, 605, 1000
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 602
HpyF3I	CTNAG	1 cut(s)	467
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	7 cut(s)	97, 150, 557, 595, 613, 677, 831
Kzo9I	GATC	4 cut(s)	41, 105, 235, 612
LmnI	GCTCC	3 cut(s)	944, 952, 994
Lsp1109I	GCAGC	3 cut(s)	481, 924, 984
MaeI	CTAG	1 cut(s)	1007
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	5 cut(s)	79, 308, 457, 775, 880
MalI	GATC	4 cut(s)	43, 107, 237, 614
MboI	GATC	4 cut(s)	41, 105, 235, 612
MboII	GAAGA	5 cut(s)	38, 50, 245, 437, 739
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	2 cut(s)	41, 105
MhlI	GDGCHC	1 cut(s)	949
MluCI	AATT	5 cut(s)	171, 408, 441, 702, 849
MlyI	GAGTC	5 cut(s)	17, 551, 673, 958, 970
MmeI	TCCRAC	2 cut(s)	415, 850
MnlI	CCTC	7 cut(s)	431, 704, 809, 896, 960, 977, 1014
MroXI	GAANNNNTTC	1 cut(s)	663
MseI	TTAA	6 cut(s)	126, 137, 207, 279, 339, 474
MslI	CAYNNNNRTG	1 cut(s)	672
MspA1I	CMGCKG	1 cut(s)	937
MspI	CCGG	1 cut(s)	855
MspR9I	CCNGG	2 cut(s)	942, 961
MunI	CAATTG	1 cut(s)	171
Mva1269I	GAATGC	1 cut(s)	868
MvaI	CCWGG	2 cut(s)	942, 961
MwoI	GCNNNNNNNGC	2 cut(s)	176, 602
NdeI	CATATG	1 cut(s)	161
NdeII	GATC	4 cut(s)	41, 105, 235, 612
NlaIII	CATG	7 cut(s)	97, 150, 557, 595, 613, 677, 831
NlaIV	GGNNCC	1 cut(s)	597
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	79
PagI	TCATGA	1 cut(s)	93
PaqCI	CACCTGC	1 cut(s)	930
PctI	GAATGC	1 cut(s)	868
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	72, 757
PflFI	GACNNNGTC	1 cut(s)	1031
PkrI	GCNGC	3 cut(s)	496, 939, 999
PleI	GAGTC	5 cut(s)	16, 550, 673, 958, 970
PpsI	GAGTC	5 cut(s)	16, 550, 673, 958, 970
Psp124BI	GAGCTC	1 cut(s)	949
Psp6I	CCWGG	2 cut(s)	940, 959
PspGI	CCWGG	2 cut(s)	940, 959
PspN4I	GGNNCC	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	30
PstNI	CAGNNNCTG	2 cut(s)	118, 379
PsuI	RGATCY	2 cut(s)	41, 105
PsyI	GACNNNGTC	1 cut(s)	1031
PvuII	CAGCTG	1 cut(s)	937
RsaI	GTAC	4 cut(s)	587, 624, 898, 911
RsaNI	GTAC	4 cut(s)	586, 623, 897, 910
RseI	CAYNNNNRTG	1 cut(s)	672
SacI	GAGCTC	1 cut(s)	949
SaqAI	TTAA	6 cut(s)	126, 137, 207, 279, 339, 474
SatI	GCNGC	3 cut(s)	495, 938, 998
Sau3AI	GATC	4 cut(s)	41, 105, 235, 612
Sau96I	GGNCC	1 cut(s)	30
SchI	GAGTC	5 cut(s)	17, 551, 673, 958, 970
ScrFI	CCNGG	2 cut(s)	942, 961
SduI	GDGCHC	1 cut(s)	949
SinI	GGWCC	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	672
SmlI	CTYRAG	1 cut(s)	800
SmoI	CTYRAG	1 cut(s)	800
Sse9I	AATT	5 cut(s)	171, 408, 441, 702, 849
SspMI	CTAG	1 cut(s)	1007
SstI	GAGCTC	1 cut(s)	949
StyD4I	CCNGG	2 cut(s)	940, 959
TaaI	ACNGT	6 cut(s)	34, 85, 142, 187, 364, 583
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	2 cut(s)	639, 952
TasI	AATT	5 cut(s)	171, 408, 441, 702, 849
TatI	WGTACW	2 cut(s)	585, 896
TfiI	GAWTC	2 cut(s)	72, 757
Tru1I	TTAA	6 cut(s)	126, 137, 207, 279, 339, 474
Tru9I	TTAA	6 cut(s)	126, 137, 207, 279, 339, 474
TscAI	CASTG	3 cut(s)	32, 380, 586
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	3 cut(s)	494, 937, 997
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	5 cut(s)	110, 148, 749, 816, 875
TspRI	CASTG	3 cut(s)	32, 380, 586
Tth111I	GACNNNGTC	1 cut(s)	1031
VpaK11BI	GGWCC	1 cut(s)	30
XapI	RAATTY	2 cut(s)	408, 441
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	1 cut(s)	1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.