AT1G23220

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015892
Physical Location & Seq
Forward (+)
8242369 .. 8244403
2035 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G23220.1

Sequence Viewer

Length: 390 bp
ATGGAAGGAGTTGAGCTAGAATTAGAAAGAAGAAGCAAGTTCTTGAACAGTTTGATACAGAAGAAGAAGGCTAAAGAACAGCAAGATCAGAAAGATGAGTTCAATGTTCGTGTTAGGGCTTCAGATATGCCTTTGCCTCAACAGAACAGAGCCTTTAGTTTGTCGCGTGAGATTTTGAATGCTACTCCAGGGAAGGCTGATAACAAAAGACTCGCTCATGCCCTAAAAAAGGACTTCGATTCAGCCTACGGCCCGGCATGGCACTGCATTGTTGGAACAAGCTTTGGTTCATACGTGACTCATTCCACAGGAGGATTCCTATATTTTCAGATCGACAAAGTTTACGTTCTTCTCTTCAAGACTGCCGTGGAGCCGTTAGATCAAAAATGA

Protein Analysis

129

Amino Acids

14.72

Weight (kDa)

9.21

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 36 - 121 7.6e-28 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015892)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23220
fragaria_vesca FvH4_4g33881
malus_domestica MD13G1030400.v1.1 MD16G1021100.v1.1
pyrus_communis pycom16g01890
rosa_chinensis RchiOBHm_Chr4g0443401
rosa_laevigata RLG00000005931
rosa_multiflora Rmu_ssc0000122.1_g000015
rosa_roxburghii Rroxscaffold_5G00383960
rosa_rugosa Rorug04G0346000 Rorug04G0346000
rosa_samantha Rh4AG401400 Rh4CG428500 Rh4DG408600
rosa_wichuraiana Rw4G034610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 166
AcuI CTGAAG 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 4 cut(s) 46, 103, 178, 358
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 2 cut(s) 16, 282
AluI AGCT 2 cut(s) 16, 282
AoxI GGCC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 251
AsuC2I CCSGG 1 cut(s) 254
BceAI ACGGC 3 cut(s) 265, 350, 358
BciT130I CCWGG 1 cut(s) 189
BcnI CCSGG 1 cut(s) 254
BfaI CTAG 1 cut(s) 17
Bme1390I CCNGG 2 cut(s) 189, 254
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 2 cut(s) 189, 254
BpmI CTGGAG 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 295
BsaJI CCNNGG 2 cut(s) 188, 366
Bsc4I CCNNNNNNNGG 1 cut(s) 229
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 2 cut(s) 188, 366
BseLI CCNNNNNNNGG 1 cut(s) 229
Bsh1236I CGCG 1 cut(s) 166
BshFI GGCC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 229
BsmI GAATGC 1 cut(s) 184
BsnI GGCC 1 cut(s) 252
Bsp143I GATC 3 cut(s) 85, 330, 379
BspANI GGCC 1 cut(s) 252
BspFNI CGCG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 372
BssECI CCNNGG 2 cut(s) 188, 366
BssMI GATC 3 cut(s) 85, 330, 379
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 1 cut(s) 359
BstBAI YACGTR 1 cut(s) 295
BstDSI CCRYGG 1 cut(s) 366
BstENI CCTNNNNNAGG 1 cut(s) 227
BstFNI CGCG 1 cut(s) 166
BstKTI GATC 3 cut(s) 88, 333, 382
BstMBI GATC 3 cut(s) 85, 330, 379
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 187, 252
BstUI CGCG 1 cut(s) 166
BsuRI GGCC 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 366
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 251
CviAII CATG 2 cut(s) 218, 258
CviJI RGCY 9 cut(s) 16, 71, 119, 152, 197, 245, 252, 282, 373
CviKI_1 RGCY 9 cut(s) 16, 71, 119, 152, 197, 245, 252, 282, 373
DpnI GATC 3 cut(s) 87, 332, 381
DpnII GATC 3 cut(s) 85, 330, 379
Eam1104I CTCTTC 1 cut(s) 359
EarI CTCTTC 1 cut(s) 359
Eco57I CTGAAG 1 cut(s) 105
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 187
FaeI CATG 2 cut(s) 221, 261
FaiI YATR 5 cut(s) 128, 219, 259, 292, 322
FatI CATG 2 cut(s) 217, 257
FspBI CTAG 1 cut(s) 17
GsuI CTGGAG 1 cut(s) 171
HaeIII GGCC 1 cut(s) 252
HapII CCGG 1 cut(s) 254
Hin1II CATG 2 cut(s) 221, 261
HindIII AAGCTT 1 cut(s) 280
HinfI GANTC 4 cut(s) 210, 239, 298, 315
HpaII CCGG 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 3 cut(s) 90, 124, 330
Hpy188III TCNNGA 2 cut(s) 43, 358
Hpy8I GTNNAC 1 cut(s) 343
HpyAV CCTTC 2 cut(s) 61, 187
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4IV ACGT 2 cut(s) 294, 345
HpyCH4V TGCA 1 cut(s) 267
HpySE526I ACGT 2 cut(s) 294, 345
Hsp92II CATG 2 cut(s) 221, 261
Kzo9I GATC 3 cut(s) 85, 330, 379
LmnI GCTCC 1 cut(s) 370
LpnPI CCDG 4 cut(s) 174, 201, 267, 294
MaeI CTAG 1 cut(s) 17
MaeII ACGT 2 cut(s) 294, 345
MaeIII GTNAC 1 cut(s) 295
MalI GATC 3 cut(s) 87, 332, 381
MboI GATC 3 cut(s) 85, 330, 379
MboII GAAGA 5 cut(s) 42, 73, 76, 341, 346
MluCI AATT 1 cut(s) 20
MlyI GAGTC 2 cut(s) 204, 292
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 2 cut(s) 147, 305
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 2 cut(s) 189, 254
Mva1269I GAATGC 1 cut(s) 184
MvaI CCWGG 1 cut(s) 189
MvnI CGCG 1 cut(s) 166
NciI CCSGG 1 cut(s) 254
NdeII GATC 3 cut(s) 85, 330, 379
NlaIII CATG 2 cut(s) 221, 261
NlaIV GGNNCC 1 cut(s) 372
NmuCI GTSAC 1 cut(s) 295
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 2 cut(s) 239, 315
PleI GAGTC 2 cut(s) 204, 292
PpsI GAGTC 2 cut(s) 204, 292
Ppu21I YACGTR 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 1 cut(s) 251
Sau3AI GATC 3 cut(s) 85, 330, 379
Sau96I GGNCC 1 cut(s) 251
SchI GAGTC 2 cut(s) 204, 292
ScrFI CCNGG 2 cut(s) 189, 254
SetI ASST 4 cut(s) 18, 284, 297, 348
Sse9I AATT 1 cut(s) 20
SspMI CTAG 1 cut(s) 17
StyD4I CCNGG 2 cut(s) 187, 252
TaaI ACNGT 1 cut(s) 50
TaiI ACGT 2 cut(s) 297, 348
TaqI TCGA 2 cut(s) 237, 333
TasI AATT 1 cut(s) 20
TfiI GAWTC 2 cut(s) 239, 315
TscAI CASTG 1 cut(s) 269
TseFI GTSAC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 1 cut(s) 279
TspRI CASTG 1 cut(s) 269
XagI CCTNNNNNAGG 1 cut(s) 227
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.