Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000122.1

Orthogroup ID

OG0015892

Physical Location & Seq

Genomic Coordinates Reverse (-)

71199 .. 71516

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000122.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atggatgcagcagagctggagctggagaggcggagcaagttcttgagtagtttgattcagaagaagaaggcggtggagcagcaagaccaccatgacatgctcaatgtgagagttagggcgtctgatatgccagtcgctttgcaaaaccgagcttttcggtgcgcgagggatcatcttgactccatgcctgggaagctcgacagtaaacggcttgctttggcacttaagaaggtcatatcttttgggtttatcagatcagggttttgctttgtttttctgggttatgatcttgtgggttttgtagtgtctggactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

105

Amino Acids

11.89

Weight (kDa)

9.56

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23220
fragaria_vesca	FvH4_4g33881
malus_domestica	MD13G1030400.v1.1 MD16G1021100.v1.1
pyrus_communis	pycom16g01890
rosa_chinensis	RchiOBHm_Chr4g0443401
rosa_laevigata	RLG00000005931
rosa_multiflora	Rmu_ssc0000122.1_g000015
rosa_roxburghii	Rroxscaffold_5G00383960
rosa_rugosa	Rorug04G0346000 Rorug04G0346000
rosa_samantha	Rh4AG401400 Rh4CG428500 Rh4DG408600
rosa_wichuraiana	Rw4G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	164
AciI	CCGC	2 cut(s)	31, 71
AclWI	GGATC	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	189
AflII	CTTAAG	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	4 cut(s)	16, 22, 152, 196
AluI	AGCT	4 cut(s)	16, 22, 152, 196
AlwI	GGATC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	8, 79
AspLEI	GCGC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	20, 91
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	189
BfrI	CTTAAG	1 cut(s)	224
BisI	GCNGC	2 cut(s)	9, 80
BlsI	GCNGC	2 cut(s)	10, 81
Bme1390I	CCNGG	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	189
BpmI	CTGGAG	2 cut(s)	38, 44
BpuEI	CTTGAG	1 cut(s)	64
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	20, 91
Bsh1236I	CGCG	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	189
Bsp143I	GATC	3 cut(s)	169, 254, 286
BspACI	CCGC	2 cut(s)	31, 71
BspFNI	CGCG	1 cut(s)	164
BspPI	GGATC	1 cut(s)	177
BspTI	CTTAAG	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	3 cut(s)	169, 254, 286
BssNI	GRCGYC	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	119
BstAFI	CTTAAG	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	3 cut(s)	172, 257, 289
BstMBI	GATC	3 cut(s)	169, 254, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 193
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	187
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	2 cut(s)	20, 91
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	1 cut(s)	164
CseI	GACGC	1 cut(s)	108
CviAII	CATG	3 cut(s)	92, 97, 184
CviJI	RGCY	5 cut(s)	16, 22, 152, 196, 211
CviKI_1	RGCY	5 cut(s)	16, 22, 152, 196, 211
DpnI	GATC	3 cut(s)	171, 256, 288
DpnII	GATC	3 cut(s)	169, 254, 286
EciI	GGCGGA	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	187
FaeI	CATG	3 cut(s)	95, 100, 187
FaiI	YATR	6 cut(s)	93, 98, 128, 185, 236, 285
FatI	CATG	3 cut(s)	91, 96, 183
Fnu4HI	GCNGC	2 cut(s)	9, 80
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	9, 80
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	2 cut(s)	9, 80
GsuI	CTGGAG	2 cut(s)	38, 44
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	3 cut(s)	95, 100, 187
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HinfI	GANTC	2 cut(s)	55, 179
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	3 cut(s)	60, 124, 254
Hpy188III	TCNNGA	3 cut(s)	43, 176, 309
Hpy8I	GTNNAC	1 cut(s)	206
HpyAV	CCTTC	2 cut(s)	61, 223
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	2 cut(s)	8, 142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 193
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	3 cut(s)	95, 100, 187
HspAI	GCGC	1 cut(s)	162
Kzo9I	GATC	3 cut(s)	169, 254, 286
LmnI	GCTCC	3 cut(s)	19, 33, 76
LpnPI	CCDG	8 cut(s)	2, 8, 144, 174, 201, 243, 263, 294
Lsp1109I	GCAGC	2 cut(s)	20, 91
MalI	GATC	3 cut(s)	171, 256, 288
MboI	GATC	3 cut(s)	169, 254, 286
MboII	GAAGA	2 cut(s)	73, 76
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	2 cut(s)	21, 159
MseI	TTAA	1 cut(s)	225
MspCI	CTTAAG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	2 cut(s)	28, 193
NdeII	GATC	3 cut(s)	169, 254, 286
NlaIII	CATG	3 cut(s)	95, 100, 187
NspI	RCATGY	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	10, 81
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	2 cut(s)	9, 80
Sau3AI	GATC	3 cut(s)	169, 254, 286
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	5 cut(s)	18, 24, 154, 198, 234
SmlI	CTYRAG	2 cut(s)	43, 224
SmoI	CTYRAG	2 cut(s)	43, 224
SsiI	CCGC	2 cut(s)	31, 71
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	203
TaqI	TCGA	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TseI	GCWGC	2 cut(s)	8, 79
Vha464I	CTTAAG	1 cut(s)	224
XceI	RCATGY	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.