Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0015892

Physical Location & Seq

Genomic Coordinates Reverse (-)

2183663 .. 2185449

Gene Structure 1787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1030400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAGGGAGCAGAGCTGGAGCTGGAGAGGCGGAGCAAGTTTCTCAGCAGTTTGATACAGAAGAAGAAAGCTGTGGAGGAACAAGATCACTGTGACCGCCTCAATGTTCGAGTCAGGGCATCGGATATGCCCATCCCTCTGCAAAACCGCGCCTTTCGCGCTGCGCGGGATCACCTCGACGCCATGCCCGGGAAGCTCGACAGCAAACGCCTCGCTCTCGCACTTAAAAAGGATTTCGATTCATCATACGGTCCAGCTTGGCACTGCATTGTGGGAACTAGCTTTGGTTCATACGTGACGCATTCAACTGGGGGCTTCTTGTATTTTTCTATCGACAAGGTTTACGTTCTTCTTTTCAAAACAGCCGTTGAGCCTTTGGACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

129

Amino Acids

14.5

Weight (kDa)

8.57

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	36 - 121	1.2e-27	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23220
fragaria_vesca	FvH4_4g33881
malus_domestica	MD13G1030400.v1.1 MD16G1021100.v1.1
pyrus_communis	pycom16g01890
rosa_chinensis	RchiOBHm_Chr4g0443401
rosa_laevigata	RLG00000005931
rosa_multiflora	Rmu_ssc0000122.1_g000015
rosa_roxburghii	Rroxscaffold_5G00383960
rosa_rugosa	Rorug04G0346000 Rorug04G0346000
rosa_samantha	Rh4AG401400 Rh4CG428500 Rh4DG408600
rosa_wichuraiana	Rw4G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	150, 159, 166
AciI	CCGC	4 cut(s)	31, 97, 148, 166
AclWI	GGATC	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	2 cut(s)	306, 358
AluBI	AGCT	6 cut(s)	16, 22, 71, 196, 257, 282
AluI	AGCT	6 cut(s)	16, 22, 71, 196, 257, 282
AlwI	GGATC	1 cut(s)	177
Ama87I	CYCGRG	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	161
AspLEI	GCGC	3 cut(s)	152, 161, 166
AspS9I	GGNCC	2 cut(s)	251, 379
AsuC2I	CCSGG	2 cut(s)	189, 190
AsuHPI	GGTGA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	251, 379
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	1 cut(s)	350
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BcnI	CCSGG	2 cut(s)	189, 190
BfaI	CTAG	1 cut(s)	279
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	2 cut(s)	189, 190
Bme18I	GGWCC	2 cut(s)	251, 379
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	251, 379
BmrFI	CCNGG	2 cut(s)	189, 190
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	1 cut(s)	128
BmuI	ACTGGG	1 cut(s)	318
BpmI	CTGGAG	2 cut(s)	38, 44
BpuMI	CCSGG	2 cut(s)	189, 190
BsaAI	YACGTR	1 cut(s)	295
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	148
Bsh1236I	CGCG	3 cut(s)	150, 159, 166
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	301
BsoBI	CYCGRG	1 cut(s)	188
Bsp143I	GATC	2 cut(s)	85, 169
BspACI	CCGC	4 cut(s)	31, 97, 148, 166
BspCNI	CTCAG	1 cut(s)	57
BspFNI	CGCG	3 cut(s)	150, 159, 166
BspPI	GGATC	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	2 cut(s)	85, 169
BssNI	GRCGYC	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	92, 251
BstACI	GRCGYC	1 cut(s)	180
BstBAI	YACGTR	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	132
BstFNI	CGCG	3 cut(s)	150, 159, 166
BstHHI	GCGC	3 cut(s)	152, 161, 166
BstKTI	GATC	2 cut(s)	88, 172
BstMBI	GATC	2 cut(s)	85, 169
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 156, 158, 193
BstSCI	CCNGG	2 cut(s)	187, 188
BstUI	CGCG	3 cut(s)	150, 159, 166
BstV1I	GCAGC	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	88, 262
CfoI	GCGC	3 cut(s)	152, 161, 166
Cfr13I	GGNCC	2 cut(s)	251, 379
Cfr9I	CCCGGG	1 cut(s)	188
CseI	GACGC	2 cut(s)	188, 307
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	9 cut(s)	16, 22, 71, 196, 257, 282, 315, 365, 373
CviKI_1	RGCY	9 cut(s)	16, 22, 71, 196, 257, 282, 315, 365, 373
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	2 cut(s)	87, 171
DpnII	GATC	2 cut(s)	85, 169
EciI	GGCGGA	1 cut(s)	46
Eco47I	GGWCC	2 cut(s)	251, 379
Eco88I	CYCGRG	1 cut(s)	188
FaeI	CATG	1 cut(s)	187
FaiI	YATR	4 cut(s)	128, 185, 247, 292
FatI	CATG	1 cut(s)	183
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	3 cut(s)	151, 160, 165
GluI	GCNGC	1 cut(s)	162
GsuI	CTGGAG	2 cut(s)	38, 44
HapII	CCGG	1 cut(s)	189
HgaI	GACGC	2 cut(s)	188, 307
HhaI	GCGC	3 cut(s)	152, 161, 166
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	3 cut(s)	150, 159, 164
HinP1I	GCGC	3 cut(s)	150, 159, 164
HinfI	GANTC	2 cut(s)	111, 239
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	1 cut(s)	182
HpyCH4III	ACNGT	2 cut(s)	92, 251
HpyCH4IV	ACGT	2 cut(s)	294, 345
HpyCH4V	TGCA	2 cut(s)	142, 267
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 156, 158, 193
HpyF3I	CTNAG	1 cut(s)	44
HpySE526I	ACGT	2 cut(s)	294, 345
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	3 cut(s)	150, 159, 164
Kzo9I	GATC	2 cut(s)	85, 169
LmnI	GCTCC	3 cut(s)	8, 19, 33
LpnPI	CCDG	6 cut(s)	2, 8, 100, 202, 267, 294
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	2 cut(s)	294, 345
MaeIII	GTNAC	2 cut(s)	92, 295
MalI	GATC	2 cut(s)	87, 171
MboI	GATC	2 cut(s)	85, 169
MboII	GAAGA	3 cut(s)	73, 76, 341
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	6 cut(s)	21, 70, 110, 147, 185, 221
MseI	TTAA	1 cut(s)	225
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	2 cut(s)	189, 190
MteI	GCGCNGCGC	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	301
MvnI	CGCG	3 cut(s)	150, 159, 166
MwoI	GCNNNNNNNGC	4 cut(s)	28, 156, 158, 193
NciI	CCSGG	2 cut(s)	189, 190
NdeII	GATC	2 cut(s)	85, 169
NlaIII	CATG	1 cut(s)	187
NmuCI	GTSAC	2 cut(s)	92, 295
PctI	GAATGC	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Ppu21I	YACGTR	1 cut(s)	295
PspPI	GGNCC	2 cut(s)	251, 379
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	2 cut(s)	85, 169
Sau96I	GGNCC	2 cut(s)	251, 379
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	2 cut(s)	189, 190
SfaNI	GCATC	1 cut(s)	128
SinI	GGWCC	2 cut(s)	251, 379
SmaI	CCCGGG	1 cut(s)	190
SsiI	CCGC	4 cut(s)	31, 97, 148, 166
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	187, 188
TaaI	ACNGT	2 cut(s)	92, 251
TaiI	ACGT	2 cut(s)	297, 348
TaqI	TCGA	5 cut(s)	109, 177, 198, 237, 333
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	2 cut(s)	95, 269
TseFI	GTSAC	2 cut(s)	92, 295
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	2 cut(s)	92, 295
TspDTI	ATGAA	2 cut(s)	231, 279
TspMI	CCCGGG	1 cut(s)	188
TspRI	CASTG	2 cut(s)	95, 269
VpaK11BI	GGWCC	2 cut(s)	251, 379
XmaI	CCCGGG	1 cut(s)	188
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.