Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0015892

Physical Location & Seq

Genomic Coordinates Reverse (-)

61633490 .. 61634632

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G034610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGATGCAGCAGAGCTGGAGCTGGAGAGGCGGAGCAAGTTCTTGAGTAGTTTGATTCAGAAGAAGAAGGCGGTGGAGCAGCAAGACCACCATGACATGCTCAATGTGAGAGTTAGGGCGTCTGATATGCCAGTCGCTTTGCAAAACCGAGCTTTTCGGTGCGCGAGGGATCATCTTGACTCCATGCCTGGGAAGCTCGACAGTAAACGGCTTGCTTTGGCACTTAAGAAGGATTTTGATTCATCATATGGCCCAGCTTGGCATTGCATTGTTGGAACTAGCTTTGGTTCATATGTCACACATTCTACTGGGGGATTCTTGTATTTTTCGATCGACAAGGTTTACGTCCTTCTATTTAAAACAGCTGTTGAGCCTTTGGACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

128

Amino Acids

14.52

Weight (kDa)

8.57

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	36 - 121	3.4e-29	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23220
fragaria_vesca	FvH4_4g33881
malus_domestica	MD13G1030400.v1.1 MD16G1021100.v1.1
pyrus_communis	pycom16g01890
rosa_chinensis	RchiOBHm_Chr4g0443401
rosa_laevigata	RLG00000005931
rosa_multiflora	Rmu_ssc0000122.1_g000015
rosa_roxburghii	Rroxscaffold_5G00383960
rosa_rugosa	Rorug04G0346000 Rorug04G0346000
rosa_samantha	Rh4AG401400 Rh4CG428500 Rh4DG408600
rosa_wichuraiana	Rw4G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	164
AciI	CCGC	2 cut(s)	31, 71
AclWI	GGATC	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	189
AflII	CTTAAG	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	7 cut(s)	16, 22, 152, 196, 257, 282, 365
AluI	AGCT	7 cut(s)	16, 22, 152, 196, 257, 282, 365
AlwI	GGATC	1 cut(s)	177
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	8, 79
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	2 cut(s)	251, 379
AvaII	GGWCC	1 cut(s)	379
BbvI	GCAGC	2 cut(s)	20, 91
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	189
BfaI	CTAG	1 cut(s)	279
BfrI	CTTAAG	1 cut(s)	224
BisI	GCNGC	2 cut(s)	9, 80
BlsI	GCNGC	2 cut(s)	10, 81
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	379
BmgT120I	GGNCC	2 cut(s)	251, 379
BmrFI	CCNGG	1 cut(s)	189
BmrI	ACTGGG	1 cut(s)	318
BmuI	ACTGGG	1 cut(s)	318
BpmI	CTGGAG	2 cut(s)	38, 44
BpuEI	CTTGAG	1 cut(s)	64
BsaHI	GRCGYC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	2 cut(s)	131, 313
Bse3DI	GCAATG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMI	GCAATG	1 cut(s)	262
BseNI	ACTGG	2 cut(s)	131, 313
BseXI	GCAGC	2 cut(s)	20, 91
BseYI	CCCAGC	1 cut(s)	253
Bsh1236I	CGCG	1 cut(s)	164
Bsh1285I	CGRYCG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	252
BsiEI	CGRYCG	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	189
BsnI	GGCC	1 cut(s)	252
Bsp143I	GATC	2 cut(s)	169, 330
BspACI	CCGC	2 cut(s)	31, 71
BspANI	GGCC	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	164
BspPI	GGATC	1 cut(s)	177
BspTI	CTTAAG	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	131, 313
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	2 cut(s)	169, 330
BssNI	GRCGYC	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	119
BstAFI	CTTAAG	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	2 cut(s)	172, 333
BstMBI	GATC	2 cut(s)	169, 330
BstMCI	CGRYCG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 193
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	187
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	2 cut(s)	20, 91
BsuRI	GGCC	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	251, 379
CseI	GACGC	1 cut(s)	108
CviAII	CATG	3 cut(s)	92, 97, 184
DpnI	GATC	2 cut(s)	171, 332
DpnII	GATC	2 cut(s)	169, 330
DraI	TTTAAA	1 cut(s)	358
EciI	GGCGGA	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	187
FaeI	CATG	3 cut(s)	95, 100, 187
FaiI	YATR	8 cut(s)	93, 98, 128, 185, 247, 249, 292, 294
FatI	CATG	3 cut(s)	91, 96, 183
FauNDI	CATATG	2 cut(s)	247, 292
Fnu4HI	GCNGC	2 cut(s)	9, 80
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	9, 80
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	2 cut(s)	9, 80
GsaI	CCCAGC	1 cut(s)	257
GsuI	CTGGAG	2 cut(s)	38, 44
HaeIII	GGCC	1 cut(s)	252
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	119
Hin1II	CATG	3 cut(s)	95, 100, 187
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HinfI	GANTC	4 cut(s)	55, 179, 239, 315
Hpy166II	GTNNAC	2 cut(s)	206, 343
Hpy188I	TCNGA	2 cut(s)	60, 124
Hpy188III	TCNNGA	2 cut(s)	43, 176
Hpy8I	GTNNAC	2 cut(s)	206, 343
HpyAV	CCTTC	3 cut(s)	61, 223, 359
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	3 cut(s)	8, 142, 267
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 193
HpySE526I	ACGT	1 cut(s)	345
Hsp92I	GRCGYC	1 cut(s)	119
Hsp92II	CATG	3 cut(s)	95, 100, 187
HspAI	GCGC	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	169, 330
LmnI	GCTCC	3 cut(s)	19, 33, 76
LpnPI	CCDG	7 cut(s)	2, 8, 144, 174, 201, 267, 294
Lsp1109I	GCAGC	2 cut(s)	20, 91
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	2 cut(s)	171, 332
MboI	GATC	2 cut(s)	169, 330
MboII	GAAGA	2 cut(s)	73, 76
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	2 cut(s)	21, 159
MseI	TTAA	2 cut(s)	225, 357
MspA1I	CMGCKG	1 cut(s)	365
MspCI	CTTAAG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	2 cut(s)	28, 193
NdeI	CATATG	2 cut(s)	247, 292
NdeII	GATC	2 cut(s)	169, 330
NlaIII	CATG	3 cut(s)	95, 100, 187
NmuCI	GTSAC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	100
PfeI	GAWTC	3 cut(s)	55, 239, 315
PkrI	GCNGC	2 cut(s)	10, 81
Ple19I	CGATCG	1 cut(s)	333
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	251, 379
PvuI	CGATCG	1 cut(s)	333
PvuII	CAGCTG	1 cut(s)	365
SaqAI	TTAA	2 cut(s)	225, 357
SatI	GCNGC	2 cut(s)	9, 80
Sau3AI	GATC	2 cut(s)	169, 330
Sau96I	GGNCC	2 cut(s)	251, 379
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	189
SetI	ASST	9 cut(s)	18, 24, 154, 198, 259, 284, 342, 348, 367
SinI	GGWCC	1 cut(s)	379
SmlI	CTYRAG	2 cut(s)	43, 224
SmoI	CTYRAG	2 cut(s)	43, 224
SsiI	CCGC	2 cut(s)	31, 71
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	3 cut(s)	198, 329, 333
TfiI	GAWTC	3 cut(s)	55, 239, 315
Tru1I	TTAA	2 cut(s)	225, 357
Tru9I	TTAA	2 cut(s)	225, 357
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	2 cut(s)	8, 79
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	2 cut(s)	231, 279
Vha464I	CTTAAG	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	379
XceI	RCATGY	1 cut(s)	100
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.