Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0015892

Physical Location & Seq

Genomic Coordinates Reverse (-)

1520394 .. 1521826

Gene Structure 1433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1021100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGCACTTTTTGACTGATATGAGCGTGAAATTATCATCGGCGAAGAGAGAAATGGAGAGAGCAGAGCTGGAGCTGGAGAGGCGGAGCAAGTTCCTTAGCAGTTTGATACAGAAGAAGAAATCTGTGGAGGAACAAGATCACCGTGATAGCCTCAATGTCCGAGTCAGGGCCTCTGACATGCCCATCACTCTGCAAAACCGCGCCTTTCGGTCTGCGCGGGAACACCTCGACGCCATGCCCGGGAAGCTCGACAGCAAAGGCCTCGCTCTCGCACTTAAAAAGGATTTCGATTCATCGTATGGTCCGGCTTGGCACTGCATTGTTGGAACTAGCTTCGGTTCGTACGTGACACATTCCACTGGCGGCTTCTTGTATTTTTCGATCGACAAGGTTTACGTTCTTCTCTTCAAAACAGCCGTCGAGCCTTTGGACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005868 GO:0005875 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0008092 GO:0008150 GO:0009987 GO:0010970 GO:0015630 GO:0016043 GO:0022607 GO:0030030 GO:0030031 GO:0030286 GO:0030705 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043462 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0045505 GO:0046907 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0051959 GO:0060271 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0099111 GO:0120031 GO:0120036 GO:1902494 GO:2000574 GO:2000576 GO:2000580 GO:2000582

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

146

Amino Acids

16.5

Weight (kDa)

9.01

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynein_light	PF01221	53 - 138	1.7e-27	Dynein light chain type 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23220
fragaria_vesca	FvH4_4g33881
malus_domestica	MD13G1030400.v1.1 MD16G1021100.v1.1
pyrus_communis	pycom16g01890
rosa_chinensis	RchiOBHm_Chr4g0443401
rosa_laevigata	RLG00000005931
rosa_multiflora	Rmu_ssc0000122.1_g000015
rosa_roxburghii	Rroxscaffold_5G00383960
rosa_rugosa	Rorug04G0346000 Rorug04G0346000
rosa_samantha	Rh4AG401400 Rh4CG428500 Rh4DG408600
rosa_wichuraiana	Rw4G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	201, 217
AciI	CCGC	4 cut(s)	82, 199, 217, 363
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	2 cut(s)	166, 240
AgsI	TTSAA	1 cut(s)	409
AluBI	AGCT	4 cut(s)	67, 73, 247, 333
AluI	AGCT	4 cut(s)	67, 73, 247, 333
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	2 cut(s)	168, 259
ArsI	GACNNNNNNTTYG	2 cut(s)	402, 434
AspLEI	GCGC	2 cut(s)	203, 217
AspS9I	GGNCC	3 cut(s)	168, 302, 430
AsuC2I	CCSGG	2 cut(s)	240, 241
AsuHPI	GGTGA	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	2 cut(s)	302, 430
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	1 cut(s)	401
BcgI	CGANNNNNNTGC	2 cut(s)	244, 278
BcnI	CCSGG	2 cut(s)	240, 241
BfaI	CTAG	1 cut(s)	330
BisI	GCNGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	365
Bme1390I	CCNGG	2 cut(s)	240, 241
Bme18I	GGWCC	2 cut(s)	302, 430
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	3 cut(s)	168, 302, 430
BmrFI	CCNGG	2 cut(s)	240, 241
BpmI	CTGGAG	2 cut(s)	89, 95
Bpu10I	CCTNAGC	1 cut(s)	95
BpuMI	CCSGG	2 cut(s)	240, 241
BsaAI	YACGTR	1 cut(s)	346
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 240
Bse1I	ACTGG	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	239
BseLI	CCNNNNNNNGG	2 cut(s)	166, 240
BseNI	ACTGG	1 cut(s)	364
Bsh1236I	CGCG	2 cut(s)	201, 217
Bsh1285I	CGRYCG	1 cut(s)	384
BshFI	GGCC	2 cut(s)	170, 261
BsiEI	CGRYCG	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	2 cut(s)	240, 305
BsiWI	CGTACG	1 cut(s)	342
BslI	CCNNNNNNNGG	2 cut(s)	166, 240
BsnI	GGCC	2 cut(s)	170, 261
BsoBI	CYCGRG	1 cut(s)	239
Bsp143I	GATC	2 cut(s)	136, 381
BspACI	CCGC	4 cut(s)	82, 199, 217, 363
BspANI	GGCC	2 cut(s)	170, 261
BspFNI	CGCG	2 cut(s)	201, 217
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	239
BssMI	GATC	2 cut(s)	136, 381
BssNI	GRCGYC	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	2 cut(s)	38, 410
BstACI	GRCGYC	1 cut(s)	231
BstBAI	YACGTR	1 cut(s)	346
BstDEI	CTNAG	1 cut(s)	95
BstFNI	CGCG	2 cut(s)	201, 217
BstHHI	GCGC	2 cut(s)	203, 217
BstKTI	GATC	2 cut(s)	139, 384
BstMBI	GATC	2 cut(s)	136, 381
BstMCI	CGRYCG	1 cut(s)	384
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 244
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	238, 239
BstUI	CGCG	2 cut(s)	201, 217
BsuRI	GGCC	2 cut(s)	170, 261
BtsI	GCAGTG	1 cut(s)	313
BtsIMutI	CAGTG	2 cut(s)	313, 357
CfoI	GCGC	2 cut(s)	203, 217
Cfr13I	GGNCC	3 cut(s)	168, 302, 430
Cfr9I	CCCGGG	1 cut(s)	239
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	2 cut(s)	178, 235
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	2 cut(s)	138, 383
DpnII	GATC	2 cut(s)	136, 381
Eam1104I	CTCTTC	2 cut(s)	38, 410
EarI	CTCTTC	2 cut(s)	38, 410
EciI	GGCGGA	1 cut(s)	97
Eco147I	AGGCCT	1 cut(s)	261
Eco47I	GGWCC	2 cut(s)	302, 430
Eco88I	CYCGRG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	168
FaeI	CATG	2 cut(s)	181, 238
FaiI	YATR	4 cut(s)	20, 179, 236, 300
FatI	CATG	2 cut(s)	177, 234
FauI	CCCGC	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	364
Fsp4HI	GCNGC	1 cut(s)	364
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	2 cut(s)	202, 216
GluI	GCNGC	1 cut(s)	364
GsuI	CTGGAG	2 cut(s)	89, 95
HaeIII	GGCC	2 cut(s)	170, 261
HapII	CCGG	2 cut(s)	240, 305
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	2 cut(s)	203, 217
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	181, 238
Hin6I	GCGC	2 cut(s)	201, 215
HinP1I	GCGC	2 cut(s)	201, 215
HinfI	GANTC	2 cut(s)	162, 290
HpaII	CCGG	2 cut(s)	240, 305
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	2 cut(s)	161, 175
Hpy8I	GTNNAC	1 cut(s)	394
Hpy99I	CGWCG	2 cut(s)	233, 422
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	2 cut(s)	345, 396
HpyCH4V	TGCA	3 cut(s)	4, 193, 318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 244
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	2 cut(s)	345, 396
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	181, 238
HspAI	GCGC	2 cut(s)	201, 215
Kzo9I	GATC	2 cut(s)	136, 381
LmnI	GCTCC	2 cut(s)	70, 84
LpnPI	CCDG	6 cut(s)	53, 59, 151, 253, 318, 345
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	2 cut(s)	345, 396
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	2 cut(s)	138, 383
MboI	GATC	2 cut(s)	136, 381
MboII	GAAGA	5 cut(s)	55, 124, 127, 392, 397
MluCI	AATT	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	171
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	6 cut(s)	72, 121, 161, 181, 236, 272
MseI	TTAA	1 cut(s)	276
MspI	CCGG	2 cut(s)	240, 305
MspR9I	CCNGG	2 cut(s)	240, 241
MvnI	CGCG	2 cut(s)	201, 217
MwoI	GCNNNNNNNGC	2 cut(s)	79, 244
NciI	CCSGG	2 cut(s)	240, 241
NdeII	GATC	2 cut(s)	136, 381
NlaIII	CATG	2 cut(s)	181, 238
NmuCI	GTSAC	1 cut(s)	346
NspI	RCATGY	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	290
Pfl23II	CGTACG	1 cut(s)	342
PkrI	GCNGC	1 cut(s)	365
Ple19I	CGATCG	1 cut(s)	384
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Ppu21I	YACGTR	1 cut(s)	346
PspLI	CGTACG	1 cut(s)	342
PspPI	GGNCC	3 cut(s)	168, 302, 430
PvuI	CGATCG	1 cut(s)	384
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	364
Sau3AI	GATC	2 cut(s)	136, 381
Sau96I	GGNCC	3 cut(s)	168, 302, 430
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	2 cut(s)	240, 241
SetI	ASST	8 cut(s)	69, 75, 228, 249, 335, 348, 393, 399
SinI	GGWCC	2 cut(s)	302, 430
SmaI	CCCGGG	1 cut(s)	241
Sse9I	AATT	1 cut(s)	29
SseBI	AGGCCT	1 cut(s)	261
SsiI	CCGC	4 cut(s)	82, 199, 217, 363
SspMI	CTAG	1 cut(s)	330
StuI	AGGCCT	1 cut(s)	261
StyD4I	CCNGG	2 cut(s)	238, 239
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	2 cut(s)	348, 399
TaqI	TCGA	6 cut(s)	228, 249, 288, 380, 384, 420
TaqII	GACCGA	1 cut(s)	198
TasI	AATT	1 cut(s)	29
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	2 cut(s)	320, 364
TseFI	GTSAC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	1 cut(s)	282
TspMI	CCCGGG	1 cut(s)	239
TspRI	CASTG	2 cut(s)	320, 364
VpaK11BI	GGWCC	2 cut(s)	302, 430
XceI	RCATGY	1 cut(s)	181
XmaI	CCCGGG	1 cut(s)	239
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.