Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014033

Physical Location & Seq

Genomic Coordinates Reverse (-)

8256854 .. 8258725

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAGTTCGGAGGAAGCCAAGGTCGTTGTTCCGAGGAACTTTAGATTGTTGGAAGAGCTTGAAAGAGGTGAGAAAGGTATTGGAGATGGTACTGTTAGCTATGGAATGGATGATGCTGATGATATTTATATGCAATCTTGGACTGGCACCATTCTTGGTCCTCCTAATACTGCATATGAAGGGAAAATCTTTCAGCTGAAGCTTTTCTGTGGTAAGGAGTACCCTGAAAGTCCACCGACTGTGAGGTTCCAGACCCGGATAAACATGGCTTGTGTTAACCCAGAAACTGGAGTGGTTGAACCGAGTCTCTTCCCTATGCTCACTAACTGGCGGCGAGAATATACAATGGAGGACATACTGGTTAAGCTGAAAAAAGAAATGATGACTTCGCATAACCGGAAGTTAGCTCAACCCCCGGAAGGTAACGAGGAAGCTAGGGCAGATCCAAAAGGACCAGCTAAATGTTGTGTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061630 GO:0061659 GO:0070534 GO:0070647 GO:0071704 GO:0090304 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04624 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

158

Amino Acids

17.85

Weight (kDa)

5.18

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	8 - 103	2.3e-17	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23260 AT1G70660
fragaria_vesca	FvH4_4g33750 FvH4_4g33750
malus_domestica	MD16G1020200.v1.1
prunus_persica	Prupe.1G332100_v2.0.a1 Prupe.1G332100_v2.0.a1 Prupe.1G332100_v2.0.a1 Prupe.1G332100_v2.0.a1
pyrus_communis	pycom16g01810
rosa_chinensis	RchiOBHm_Chr4g0443281
rosa_laevigata	RLG00000005941
rosa_multiflora	Rmu_sc0026145.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383870
rosa_rugosa	Rorug04G0345300
rosa_samantha	Rh4DG407100
rosa_wichuraiana	Rw4G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	287
AciI	CCGC	1 cut(s)	331
AclWI	GGATC	1 cut(s)	437
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	2 cut(s)	91, 221
AfiI	CCNNNNNNNGG	2 cut(s)	287, 419
AgsI	TTSAA	2 cut(s)	62, 299
AluBI	AGCT	8 cut(s)	58, 99, 196, 202, 367, 407, 434, 458
AluI	AGCT	8 cut(s)	58, 99, 196, 202, 367, 407, 434, 458
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	437
AlwNI	CAGNNNCTG	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	158, 452
AsuC2I	CCSGG	2 cut(s)	256, 416
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	2 cut(s)	158, 452
BanI	GGYRCC	1 cut(s)	146
BccI	CCATC	1 cut(s)	80
BcnI	CCSGG	2 cut(s)	256, 416
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	1 cut(s)	435
BisI	GCNGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	333
Bme1390I	CCNGG	2 cut(s)	256, 416
Bme18I	GGWCC	2 cut(s)	158, 452
BmgT120I	GGNCC	2 cut(s)	158, 452
BmiI	GGNNCC	2 cut(s)	148, 248
BmrFI	CCNGG	2 cut(s)	256, 416
BmsI	GCATC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	309
BpuMI	CCSGG	2 cut(s)	256, 416
BsaJI	CCNNGG	3 cut(s)	18, 32, 414
BsaWI	WCCGGW	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 419
Bse1I	ACTGG	4 cut(s)	148, 292, 332, 363
BseDI	CCNNGG	3 cut(s)	18, 32, 414
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	2 cut(s)	287, 419
BseNI	ACTGG	4 cut(s)	148, 292, 332, 363
BshNI	GGYRCC	1 cut(s)	146
BsiSI	CCGG	3 cut(s)	256, 397, 416
BslI	CCNNNNNNNGG	2 cut(s)	287, 419
BsmAI	GTCTC	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	442
BspACI	CCGC	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	148, 248
BspPI	GGATC	1 cut(s)	437
BspQI	GCTCTTC	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	146
BsrI	ACTGG	4 cut(s)	148, 292, 332, 363
BssECI	CCNNGG	3 cut(s)	18, 32, 414
BssMI	GATC	1 cut(s)	442
BssT1I	CCWWGG	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	94, 241
Bst6I	CTCTTC	2 cut(s)	48, 314
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	1 cut(s)	442
BstSCI	CCNGG	2 cut(s)	254, 414
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	115
CaiI	CAGNNNCTG	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	158, 452
Csp6I	GTAC	2 cut(s)	90, 220
CviAII	CATG	1 cut(s)	265
CviQI	GTAC	2 cut(s)	90, 220
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
Eam1104I	CTCTTC	2 cut(s)	48, 314
EarI	CTCTTC	2 cut(s)	48, 314
Eco130I	CCWWGG	1 cut(s)	18
Eco47I	GGWCC	2 cut(s)	158, 452
Eco57I	CTGAAG	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	1 cut(s)	268
FatI	CATG	1 cut(s)	264
FauNDI	CATATG	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	332
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	332
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	1 cut(s)	332
GsuI	CTGGAG	1 cut(s)	309
HapII	CCGG	3 cut(s)	256, 397, 416
Hin1II	CATG	1 cut(s)	268
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	200
HinfI	GANTC	1 cut(s)	304
HpaI	GTTAAC	1 cut(s)	277
HpaII	CCGG	3 cut(s)	256, 397, 416
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	233, 277
Hpy188I	TCNGA	2 cut(s)	10, 33
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	2 cut(s)	233, 277
HpyAV	CCTTC	2 cut(s)	173, 413
HpyCH4III	ACNGT	2 cut(s)	94, 241
HpyCH4V	TGCA	2 cut(s)	133, 173
Hsp92II	CATG	1 cut(s)	268
KspAI	GTTAAC	1 cut(s)	277
Kzo9I	GATC	1 cut(s)	442
LguI	GCTCTTC	1 cut(s)	48
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	435
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	2 cut(s)	65, 301
MflI	RGATCY	1 cut(s)	442
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	7 cut(s)	4, 27, 59, 171, 237, 343, 421
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	2 cut(s)	276, 363
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	3 cut(s)	256, 397, 416
MspR9I	CCNGG	2 cut(s)	256, 416
NciI	CCSGG	2 cut(s)	256, 416
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	1 cut(s)	268
NlaIV	GGNNCC	2 cut(s)	148, 248
PciSI	GCTCTTC	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	333
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	148, 248
PspPI	GGNCC	2 cut(s)	158, 452
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	442
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	2 cut(s)	91, 221
RsaNI	GTAC	2 cut(s)	90, 220
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	276, 363
SatI	GCNGC	1 cut(s)	332
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	2 cut(s)	158, 452
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	256, 416
SfaNI	GCATC	1 cut(s)	103
SinI	GGWCC	2 cut(s)	158, 452
SsiI	CCGC	1 cut(s)	331
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	2 cut(s)	254, 414
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	94, 241
TauI	GCSGC	1 cut(s)	334
Tru1I	TTAA	2 cut(s)	276, 363
Tru9I	TTAA	2 cut(s)	276, 363
TspDTI	ATGAA	1 cut(s)	192
Van91I	CCANNNNNTGG	1 cut(s)	287
VpaK11BI	GGWCC	2 cut(s)	158, 452
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.