Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014033

Physical Location & Seq

Genomic Coordinates Reverse (-)

31437859 .. 31442694

Gene Structure 4836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G332100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGGTCTGAAGGATCAAGCGTTGTCGTTCCGAGGAATTTCAGATTGCTGGAAGAGCTCGAGAGGGGTGAAAAGGGAATTGGGGATGGCACTGTTAGCTATGGGATGGATGATGCCGATGATATATATATGCAGTCATGGACGGGGACAATCATTGGCCCCCCCAATACTGTGCATGAAGGGAGAATTTGCCAGTTGAAACTGTTCTGTGGAAAGGATTATCCGGATAATCCACCAACTGTTAGGTTCCAAACAAGGATTAACATGACATGTGTCAATCAGGAAACTGGAGTGGTTGAACCCAGTCTTTTCCCCATGCTTGCAAATTGGCAAAGGGAATATACAATGGAGGACATATTGACACAATTGAAGAAAGAGATGATGTCACCACAAAACCGAAAGCTAGCTCAGCCACCTGAAGGCAATGAAGATGGAAGGGGTGATCAAAAGGGGCTTGTGGTGAAATGTTGCATTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04624 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

160

Amino Acids

17.86

Weight (kDa)

4.85

Isoelectric Point (pI)

26.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23260 AT1G70660
fragaria_vesca	FvH4_4g33750 FvH4_4g33750
malus_domestica	MD16G1020200.v1.1
prunus_persica	Prupe.1G332100_v2.0.a1 Prupe.1G332100_v2.0.a1 Prupe.1G332100_v2.0.a1 Prupe.1G332100_v2.0.a1
pyrus_communis	pycom16g01810
rosa_chinensis	RchiOBHm_Chr4g0443281
rosa_laevigata	RLG00000005941
rosa_multiflora	Rmu_sc0026145.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383870
rosa_rugosa	Rorug04G0345300
rosa_samantha	Rh4DG407100
rosa_wichuraiana	Rw4G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	223
AclWI	GGATC	1 cut(s)	22
AcsI	RAATTY	2 cut(s)	37, 186
AcuI	CTGAAG	2 cut(s)	30, 438
AfiI	CCNNNNNNNGG	1 cut(s)	419
AflIII	ACRYGT	1 cut(s)	269
AgsI	TTSAA	3 cut(s)	199, 299, 370
AjuI	GAANNNNNNNTTGG	2 cut(s)	63, 95
AluBI	AGCT	4 cut(s)	58, 99, 403, 407
AluI	AGCT	4 cut(s)	58, 99, 403, 407
Alw21I	GWGCWC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	22
Ama87I	CYCGRG	1 cut(s)	59
Aor13HI	TCCGGA	1 cut(s)	223
AoxI	GGCC	1 cut(s)	157
ApoI	RAATTY	2 cut(s)	37, 186
Asp700I	GAANNNNTTC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	158
AsuHPI	GGTGA	4 cut(s)	80, 378, 452, 472
AsuNHI	GCTAGC	1 cut(s)	403
AvaI	CYCGRG	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	60
BccI	CCATC	3 cut(s)	80, 100, 425
BclI	TGATCA	1 cut(s)	442
BfaI	CTAG	1 cut(s)	404
BlpI	GCTNAGC	1 cut(s)	408
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	2 cut(s)	160, 248
BmrI	ACTGGG	1 cut(s)	297
BmsI	GCATC	1 cut(s)	103
BmtI	GCTAGC	1 cut(s)	407
BmuI	ACTGGG	1 cut(s)	297
BoxI	GACNNNNGTC	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	309
Bpu1102I	GCTNAGC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	32
BsaWI	WCCGGW	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse1I	ACTGG	3 cut(s)	193, 292, 303
Bse3DI	GCAATG	1 cut(s)	430
BseAI	TCCGGA	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	32
BseGI	GGATG	3 cut(s)	91, 111, 115
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	3 cut(s)	193, 292, 303
BshFI	GGCC	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	159
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp13I	TCCGGA	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	14, 442
Bsp1720I	GCTNAGC	1 cut(s)	408
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	421
BspEI	TCCGGA	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	160, 248
BspOI	GCTAGC	1 cut(s)	407
BspPI	GGATC	1 cut(s)	22
BspQI	GCTCTTC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	430
BsrI	ACTGG	3 cut(s)	193, 292, 303
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	2 cut(s)	14, 442
Bst4CI	ACNGT	4 cut(s)	94, 172, 204, 241
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	321, 405
BstDEI	CTNAG	1 cut(s)	408
BstF5I	GGATG	3 cut(s)	91, 111, 115
BstKTI	GATC	2 cut(s)	17, 445
BstMBI	GATC	2 cut(s)	14, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 96, 409
BstNSI	RCATGY	1 cut(s)	273
BstPAI	GACNNNNGTC	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	159
BtsCI	GGATG	3 cut(s)	91, 111, 115
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	2 cut(s)	321, 405
Cfr13I	GGNCC	1 cut(s)	158
CviAII	CATG	5 cut(s)	138, 176, 265, 270, 316
CviJI	RGCY	7 cut(s)	58, 99, 159, 403, 407, 412, 454
CviKI_1	RGCY	7 cut(s)	58, 99, 159, 403, 407, 412, 454
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	2 cut(s)	16, 444
DpnII	GATC	2 cut(s)	14, 442
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Ecl136II	GAGCTC	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	58
Eco57I	CTGAAG	2 cut(s)	30, 438
Eco88I	CYCGRG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	60
FaeI	CATG	5 cut(s)	141, 179, 268, 273, 319
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	5 cut(s)	137, 175, 264, 269, 315
FbaI	TGATCA	1 cut(s)	442
FokI	GGATG	3 cut(s)	98, 118, 122
FriOI	GRGCYC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	5 cut(s)	141, 179, 268, 273, 319
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	4 cut(s)	80, 378, 452, 472
Hpy188I	TCNGA	3 cut(s)	10, 33, 44
Hpy188III	TCNNGA	3 cut(s)	61, 224, 281
HpyAV	CCTTC	4 cut(s)	5, 173, 413, 429
HpyCH4III	ACNGT	4 cut(s)	94, 172, 204, 241
HpyCH4V	TGCA	4 cut(s)	133, 175, 323, 471
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 96, 409
HpyF3I	CTNAG	1 cut(s)	408
Hsp92II	CATG	5 cut(s)	141, 179, 268, 273, 319
Kpn2I	TCCGGA	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	2 cut(s)	14, 442
LguI	GCTCTTC	1 cut(s)	48
LpnPI	CCDG	7 cut(s)	35, 206, 237, 266, 273, 316, 429
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	404
MaeIII	GTNAC	1 cut(s)	384
MalI	GATC	2 cut(s)	16, 444
MboI	GATC	2 cut(s)	14, 442
MboII	GAAGA	3 cut(s)	65, 382, 440
MfeI	CAATTG	1 cut(s)	365
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	5 cut(s)	37, 78, 186, 325, 365
MnlI	CCTC	3 cut(s)	27, 57, 343
MroI	TCCGGA	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	1 cut(s)	261
MspI	CCGG	1 cut(s)	224
MunI	CAATTG	1 cut(s)	365
MwoI	GCNNNNNNNGC	3 cut(s)	55, 96, 409
NdeII	GATC	2 cut(s)	14, 442
NheI	GCTAGC	1 cut(s)	403
NlaIII	CATG	5 cut(s)	141, 179, 268, 273, 319
NlaIV	GGNNCC	2 cut(s)	160, 248
NmuCI	GTSAC	1 cut(s)	384
NspI	RCATGY	1 cut(s)	273
PaeR7I	CTCGAG	1 cut(s)	59
PciI	ACATGT	1 cut(s)	269
PciSI	GCTCTTC	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	203
PscI	ACATGT	1 cut(s)	269
PshAI	GACNNNNGTC	1 cut(s)	272
Psp124BI	GAGCTC	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	160, 248
PspPI	GGNCC	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	261
Sau3AI	GATC	2 cut(s)	14, 442
Sau96I	GGNCC	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	6 cut(s)	60, 101, 248, 405, 409, 418
SfaNI	GCATC	1 cut(s)	103
Sfr274I	CTCGAG	1 cut(s)	59
SlaI	CTCGAG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	5 cut(s)	37, 78, 186, 325, 365
SspMI	CTAG	1 cut(s)	404
SstI	GAGCTC	1 cut(s)	60
TaaI	ACNGT	4 cut(s)	94, 172, 204, 241
TaqI	TCGA	1 cut(s)	60
TasI	AATT	5 cut(s)	37, 78, 186, 325, 365
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	384
Tsp45I	GTSAC	1 cut(s)	384
TspDTI	ATGAA	2 cut(s)	192, 441
TspRI	CASTG	1 cut(s)	97
XapI	RAATTY	2 cut(s)	37, 186
XceI	RCATGY	1 cut(s)	273
XhoI	CTCGAG	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.