Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014033

Physical Location & Seq

Genomic Coordinates Forward (+)

62036932 .. 62040357

Gene Structure 3426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG407100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGCTCCGAGCCATCAACGGTTGTAGTTCCAAGGAATTTTAGATTACTGGAAGAGCTTGAGAGAGGTGAAAAGGGAATTGGGGATGGAACTGTTAGCTATGGGATGGATGACGCTGATGATATATTTATGCAGTCATGGACAGGGACAATTATTGGTCCCCCAAATACTGTGCATGAAGGGCGTATTTACCAGTTGAAACTGTTTTGTGGTAAAGATTATCCAGATAATCCACCAGCTGTGAGGTTCCAAACACGGATAAACATGACCTGTGTCAATCATGAAACTGGAGTGGTTGAGCCCAGTCTCTTCCCCATGCTTGCAAATTGGCAAAGGGAACATACAATGGAGGACATTTTGACACAATTGAAGAAAGATATGATGTCACCACAAAACCGAAAGCTAGCTCAGCCACCTGAAGGCCATGAAGAGGGAAGGGTAGATCAGAAAGGGCTTGTGCTGAAATGTGTCATTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UQ_con zf-RanBP

Protein Analysis

159

Amino Acids

17.96

Weight (kDa)

5.21

Isoelectric Point (pI)

26.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	42 - 136	1e-15	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23260 AT1G70660
fragaria_vesca	FvH4_4g33750 FvH4_4g33750
malus_domestica	MD16G1020200.v1.1
prunus_persica	Prupe.1G332100_v2.0.a1 Prupe.1G332100_v2.0.a1 Prupe.1G332100_v2.0.a1 Prupe.1G332100_v2.0.a1
pyrus_communis	pycom16g01810
rosa_chinensis	RchiOBHm_Chr4g0443281
rosa_laevigata	RLG00000005941
rosa_multiflora	Rmu_sc0026145.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383870
rosa_rugosa	Rorug04G0345300
rosa_samantha	Rh4DG407100
rosa_wichuraiana	Rw4G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	438
AfiI	CCNNNNNNNGG	2 cut(s)	419, 430
AgsI	TTSAA	2 cut(s)	199, 370
AjuI	GAANNNNNNNTTGG	2 cut(s)	63, 95
AluBI	AGCT	5 cut(s)	58, 99, 239, 403, 407
AluI	AGCT	5 cut(s)	58, 99, 239, 403, 407
Alw26I	GTCTC	1 cut(s)	311
AoxI	GGCC	1 cut(s)	421
ApoI	RAATTY	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	80, 378
AsuNHI	GCTAGC	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	158
BanII	GRGCYC	2 cut(s)	8, 303
BccI	CCATC	3 cut(s)	22, 80, 100
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	1 cut(s)	404
BlpI	GCTNAGC	1 cut(s)	408
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	3 cut(s)	7, 160, 248
BmrI	ACTGGG	1 cut(s)	297
BmtI	GCTAGC	1 cut(s)	407
BmuI	ACTGGG	1 cut(s)	297
BoxI	GACNNNNGTC	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	309
Bpu1102I	GCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	419, 430
Bse1I	ACTGG	4 cut(s)	54, 193, 292, 303
BseDI	CCNNGG	1 cut(s)	32
BseGI	GGATG	3 cut(s)	91, 111, 115
BseLI	CCNNNNNNNGG	2 cut(s)	419, 430
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	4 cut(s)	54, 193, 292, 303
BshFI	GGCC	1 cut(s)	423
BslFI	GGGAC	2 cut(s)	144, 160
BslI	CCNNNNNNNGG	2 cut(s)	419, 430
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	2 cut(s)	144, 160
BsnI	GGCC	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	8, 303
Bsp143I	GATC	1 cut(s)	442
Bsp1720I	GCTNAGC	1 cut(s)	408
BspANI	GGCC	1 cut(s)	423
BspCNI	CTCAG	1 cut(s)	421
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	3 cut(s)	7, 160, 248
BspOI	GCTAGC	1 cut(s)	407
BspQI	GCTCTTC	1 cut(s)	48
BsrI	ACTGG	4 cut(s)	54, 193, 292, 303
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	1 cut(s)	442
BssT1I	CCWWGG	1 cut(s)	32
Bst4CI	ACNGT	4 cut(s)	22, 94, 172, 204
Bst6I	CTCTTC	3 cut(s)	48, 314, 423
BstC8I	GCNNGC	2 cut(s)	321, 405
BstDEI	CTNAG	1 cut(s)	408
BstF5I	GGATG	3 cut(s)	91, 111, 115
BstKTI	GATC	1 cut(s)	445
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 409
BstPAI	GACNNNNGTC	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	423
BtsCI	GGATG	3 cut(s)	91, 111, 115
Cac8I	GCNNGC	2 cut(s)	321, 405
CciI	TCATGA	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	158
CseI	GACGC	1 cut(s)	122
CviAII	CATG	6 cut(s)	138, 176, 265, 281, 316, 425
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
Eam1104I	CTCTTC	3 cut(s)	48, 314, 423
EarI	CTCTTC	3 cut(s)	48, 314, 423
Eco130I	CCWWGG	1 cut(s)	32
Eco24I	GRGCYC	2 cut(s)	8, 303
Eco47I	GGWCC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	438
EcoT14I	CCWWGG	1 cut(s)	32
EcoT38I	GRGCYC	2 cut(s)	8, 303
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	6 cut(s)	141, 179, 268, 284, 319, 428
FaqI	GGGAC	2 cut(s)	144, 160
FatI	CATG	6 cut(s)	137, 175, 264, 280, 315, 424
FokI	GGATG	3 cut(s)	98, 118, 122
FriOI	GRGCYC	2 cut(s)	8, 303
FspBI	CTAG	1 cut(s)	404
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	423
HgaI	GACGC	1 cut(s)	122
Hin1II	CATG	6 cut(s)	141, 179, 268, 284, 319, 428
HphI	GGTGA	2 cut(s)	80, 378
Hpy188I	TCNGA	2 cut(s)	10, 447
Hpy188III	TCNNGA	2 cut(s)	224, 281
HpyAV	CCTTC	3 cut(s)	173, 413, 429
HpyCH4III	ACNGT	4 cut(s)	22, 94, 172, 204
HpyCH4V	TGCA	3 cut(s)	133, 175, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 409
HpyF3I	CTNAG	1 cut(s)	408
Hsp92II	CATG	6 cut(s)	141, 179, 268, 284, 319, 428
Kzo9I	GATC	1 cut(s)	442
LguI	GCTCTTC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	9 cut(s)	35, 129, 206, 237, 249, 273, 283, 316, 429
MaeI	CTAG	1 cut(s)	404
MaeIII	GTNAC	1 cut(s)	384
MalI	GATC	1 cut(s)	444
MboI	GATC	1 cut(s)	442
MboII	GAAGA	4 cut(s)	65, 301, 382, 440
MfeI	CAATTG	1 cut(s)	365
MhlI	GDGCHC	2 cut(s)	8, 303
MluCI	AATT	5 cut(s)	37, 78, 150, 325, 365
MnlI	CCTC	4 cut(s)	59, 237, 343, 424
MspA1I	CMGCKG	1 cut(s)	239
MunI	CAATTG	1 cut(s)	365
MwoI	GCNNNNNNNGC	2 cut(s)	181, 409
NdeII	GATC	1 cut(s)	442
NheI	GCTAGC	1 cut(s)	403
NlaIII	CATG	6 cut(s)	141, 179, 268, 284, 319, 428
NlaIV	GGNNCC	3 cut(s)	7, 160, 248
NmuCI	GTSAC	1 cut(s)	384
PagI	TCATGA	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	48
PshAI	GACNNNNGTC	1 cut(s)	272
PspN4I	GGNNCC	3 cut(s)	7, 160, 248
PspPI	GGNCC	1 cut(s)	158
PvuII	CAGCTG	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	1 cut(s)	158
SduI	GDGCHC	2 cut(s)	8, 303
SetI	ASST	9 cut(s)	60, 70, 101, 241, 248, 272, 405, 409, 418
SinI	GGWCC	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	5 cut(s)	37, 78, 150, 325, 365
SspMI	CTAG	1 cut(s)	404
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	4 cut(s)	22, 94, 172, 204
TasI	AATT	5 cut(s)	37, 78, 150, 325, 365
TseFI	GTSAC	1 cut(s)	384
Tsp45I	GTSAC	1 cut(s)	384
TspDTI	ATGAA	3 cut(s)	192, 297, 441
TspGWI	ACGGA	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	158
XapI	RAATTY	1 cut(s)	37
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.