Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0014033

Physical Location & Seq

Genomic Coordinates Reverse (-)

51721153 .. 51721647

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0345300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGCACGATGGCTTTAGTGTGGGGTTTTGGGAACCACTTGAGGATCAGGGAGTATAGTAGTCGTTTTGTTTTAAACTTTACGGAGGCAGCGAACCGAGATAAGGTACTTGAAGGTGGTTCGTGGTTTTTTGGGAAGCATGTCCTTGCGGCGGAGACGTTCAATGAATTTGGTGATGTTGCAACAGCTCCAATCTCCTTGATTCTTGTTTGGGTCAAGATTTTTAGGTTGTCGTTGGCTCTGTTCTCTACGAGGGCAGTAAAATTGATAGGCGCAACGCATGGGGAGATTCGGGCCAGGATCAGGCGCAACGCATGGGGAGATTCTGGCCCGGATCATGCCCAACTAGGTTTTGAACCAGAGCTGGCATTGAAGAGCTCCAATGGTGTGATCTTGGTGTCTCTTGCAAAGAAGTCCAAGGTGAGAAGGCCTCCGGGCAGGAAGAATAACCCTACTGGAGGGTTTGAAGCCCAAAAAGTTGAAGATGCAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1900865 GO:1900871 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UQ_con zf-RanBP

Protein Analysis

164

Amino Acids

18.04

Weight (kDa)

10.21

Isoelectric Point (pI)

26.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	3 - 56	1.7e-06	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23260 AT1G70660
fragaria_vesca	FvH4_4g33750 FvH4_4g33750
malus_domestica	MD16G1020200.v1.1
prunus_persica	Prupe.1G332100_v2.0.a1 Prupe.1G332100_v2.0.a1 Prupe.1G332100_v2.0.a1 Prupe.1G332100_v2.0.a1
pyrus_communis	pycom16g01810
rosa_chinensis	RchiOBHm_Chr4g0443281
rosa_laevigata	RLG00000005941
rosa_multiflora	Rmu_sc0026145.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383870
rosa_rugosa	Rorug04G0345300
rosa_samantha	Rh4DG407100
rosa_wichuraiana	Rw4G034520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	149, 152
AclWI	GGATC	3 cut(s)	53, 308, 342
AcsI	RAATTY	1 cut(s)	167
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	4 cut(s)	103, 151, 303, 458
AgsI	TTSAA	6 cut(s)	113, 163, 356, 373, 467, 482
AjnI	CCWGG	1 cut(s)	296
AluBI	AGCT	3 cut(s)	188, 364, 378
AluI	AGCT	3 cut(s)	188, 364, 378
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	2 cut(s)	149, 405
AlwI	GGATC	3 cut(s)	53, 308, 342
AoxI	GGCC	3 cut(s)	294, 328, 428
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	167
AspLEI	GCGC	2 cut(s)	275, 309
AspS9I	GGNCC	2 cut(s)	294, 329
AsuC2I	CCSGG	2 cut(s)	332, 435
AsuHPI	GGTGA	2 cut(s)	185, 433
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	1 cut(s)	4
BciT130I	CCWGG	1 cut(s)	298
BcnI	CCSGG	2 cut(s)	332, 435
BcoDI	GTCTC	2 cut(s)	149, 405
BfaI	CTAG	1 cut(s)	347
BisI	GCNGC	2 cut(s)	90, 150
BlsI	GCNGC	2 cut(s)	91, 151
Bme1390I	CCNGG	3 cut(s)	298, 332, 435
BmgT120I	GGNCC	2 cut(s)	294, 329
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	3 cut(s)	298, 332, 435
BmsI	GCATC	1 cut(s)	475
BplI	GAGNNNNNCTC	2 cut(s)	415, 447
BpmI	CTGGAG	1 cut(s)	477
BpuEI	CTTGAG	1 cut(s)	61
BpuMI	CCSGG	2 cut(s)	332, 435
BsaJI	CCNNGG	1 cut(s)	417
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 151, 303, 458
Bse1I	ACTGG	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	417
BseLI	CCNNNNNNNGG	4 cut(s)	103, 151, 303, 458
BseNI	ACTGG	1 cut(s)	460
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	101
BshFI	GGCC	3 cut(s)	296, 330, 430
BsiHKAI	GWGCWC	1 cut(s)	380
BsiSI	CCGG	2 cut(s)	332, 434
BslI	CCNNNNNNNGG	4 cut(s)	103, 151, 303, 458
BsmAI	GTCTC	2 cut(s)	149, 405
BsmBI	CGTCTC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	296, 330, 430
Bsp1286I	GDGCHC	2 cut(s)	8, 380
Bsp143I	GATC	4 cut(s)	45, 300, 334, 390
BspACI	CCGC	2 cut(s)	149, 152
BspANI	GGCC	3 cut(s)	296, 330, 430
BspLI	GGNNCC	1 cut(s)	35
BspPI	GGATC	3 cut(s)	53, 308, 342
BspQI	GCTCTTC	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	4 cut(s)	45, 300, 334, 390
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	366
BstENI	CCTNNNNNAGG	1 cut(s)	456
BstHHI	GCGC	2 cut(s)	275, 309
BstKTI	GATC	4 cut(s)	48, 303, 337, 393
BstMAI	GTCTC	2 cut(s)	149, 405
BstMBI	GATC	4 cut(s)	45, 300, 334, 390
BstNI	CCWGG	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	3 cut(s)	296, 330, 433
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	101
BsuRI	GGCC	3 cut(s)	296, 330, 430
Cac8I	GCNNGC	1 cut(s)	366
CfoI	GCGC	2 cut(s)	275, 309
Cfr13I	GGNCC	2 cut(s)	294, 329
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	4 cut(s)	140, 281, 315, 338
CviJI	RGCY	9 cut(s)	14, 188, 239, 296, 330, 364, 378, 430, 470
CviKI_1	RGCY	9 cut(s)	14, 188, 239, 296, 330, 364, 378, 430, 470
CviQI	GTAC	1 cut(s)	107
DpnI	GATC	4 cut(s)	47, 302, 336, 392
DpnII	GATC	4 cut(s)	45, 300, 334, 390
DraI	TTTAAA	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
EciI	GGCGGA	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	417
Eco147I	AGGCCT	1 cut(s)	430
Eco24I	GRGCYC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	378
EcoICRI	GAGCTC	1 cut(s)	378
EcoNI	CCTNNNNNAGG	1 cut(s)	456
EcoRII	CCWGG	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	417
Esp3I	CGTCTC	1 cut(s)	149
FaeI	CATG	4 cut(s)	143, 284, 318, 341
FaiI	YATR	5 cut(s)	57, 141, 282, 316, 339
FatI	CATG	4 cut(s)	139, 280, 314, 337
Fnu4HI	GCNGC	2 cut(s)	90, 150
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	2 cut(s)	90, 150
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	2 cut(s)	274, 308
GluI	GCNGC	2 cut(s)	90, 150
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	3 cut(s)	296, 330, 430
HapII	CCGG	2 cut(s)	332, 434
HhaI	GCGC	2 cut(s)	275, 309
Hin1II	CATG	4 cut(s)	143, 284, 318, 341
Hin6I	GCGC	2 cut(s)	273, 307
HinP1I	GCGC	2 cut(s)	273, 307
HinfI	GANTC	3 cut(s)	202, 289, 323
HpaII	CCGG	2 cut(s)	332, 434
HphI	GGTGA	2 cut(s)	185, 433
Hpy188III	TCNNGA	1 cut(s)	217
HpyAV	CCTTC	2 cut(s)	107, 420
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	3 cut(s)	182, 407, 488
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	4 cut(s)	143, 284, 318, 341
HspAI	GCGC	2 cut(s)	273, 307
Kzo9I	GATC	4 cut(s)	45, 300, 334, 390
LguI	GCTCTTC	1 cut(s)	368
LmnI	GCTCC	2 cut(s)	193, 383
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	1 cut(s)	475
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	158
MalI	GATC	4 cut(s)	47, 302, 336, 392
MboI	GATC	4 cut(s)	45, 300, 334, 390
MboII	GAAGA	3 cut(s)	385, 454, 494
MhlI	GDGCHC	2 cut(s)	8, 380
MluCI	AATT	2 cut(s)	167, 263
MnlI	CCTC	5 cut(s)	36, 79, 246, 441, 452
MseI	TTAA	1 cut(s)	74
MspI	CCGG	2 cut(s)	332, 434
MspR9I	CCNGG	3 cut(s)	298, 332, 435
MvaI	CCWGG	1 cut(s)	298
NciI	CCSGG	2 cut(s)	332, 435
NdeII	GATC	4 cut(s)	45, 300, 334, 390
NlaIII	CATG	4 cut(s)	143, 284, 318, 341
NlaIV	GGNNCC	1 cut(s)	35
NspI	RCATGY	1 cut(s)	143
PceI	AGGCCT	1 cut(s)	430
PciSI	GCTCTTC	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PfeI	GAWTC	3 cut(s)	202, 289, 323
PkrI	GCNGC	2 cut(s)	91, 151
Psp124BI	GAGCTC	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	2 cut(s)	294, 329
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SacI	GAGCTC	1 cut(s)	380
SapI	GCTCTTC	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	2 cut(s)	90, 150
Sau3AI	GATC	4 cut(s)	45, 300, 334, 390
Sau96I	GGNCC	2 cut(s)	294, 329
ScrFI	CCNGG	3 cut(s)	298, 332, 435
SduI	GDGCHC	2 cut(s)	8, 380
SetI	ASST	9 cut(s)	108, 118, 161, 190, 230, 352, 366, 380, 423
SfaNI	GCATC	1 cut(s)	475
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
Sse9I	AATT	2 cut(s)	167, 263
SseBI	AGGCCT	1 cut(s)	430
SsiI	CCGC	2 cut(s)	149, 152
SspMI	CTAG	1 cut(s)	347
SstI	GAGCTC	1 cut(s)	380
StuI	AGGCCT	1 cut(s)	430
StyD4I	CCNGG	3 cut(s)	296, 330, 433
StyI	CCWWGG	1 cut(s)	417
TaiI	ACGT	1 cut(s)	161
TasI	AATT	2 cut(s)	167, 263
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	3 cut(s)	202, 289, 323
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	180
TspGWI	ACGGA	1 cut(s)	98
XagI	CCTNNNNNAGG	1 cut(s)	456
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	1 cut(s)	143
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.