Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011799

Physical Location & Seq

Genomic Coordinates Reverse (-)

8427257 .. 8429498

Gene Structure 2242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGACGAGGGTTTATGTCGGGAATTTGGACCCACGCGTCACCGAAAGAGAACTCGAAGACGAATTCAAGGCCTTCGGTGTTCTTCGCAATGTCTGGGTAGCTCGTAGACCTCCTGGCTACGCATTCCTCGAGTTCGATGACGAAAGAGATGCTTTGGATGCAATCAGCGCATTGGATCGAAAGAATGGGTGGCGTGTGGAGCTTTCTCATAAAGATAAAGGAGGTCGTGGAGGTGGTGGTGGTCGTCGTGGAGGTATTGAGGATTCCAAGTGCTATGAGTGTGGTGAGCTTGGACATTTTGCTCGCGAGTGTCGCCGTGGTCGAGGCTCTGTGAGGCGTAGAAGCCCTAGTCCCCGTCGTCGTAGGAGTCCAGATTATGGGTATGCTCGCAGGAGTATAAGCCCGCGTGGAAGAAGATCTCCTCCAAGGCGTCGCAGTGTTACTCCACCTCGCCGTGGGAGGAGCTACAGCAGATCCCCTCCTTATCGTGGTTCACGCCGTGATTCTCCTCGCCGCAGAGACTCGCCCTATGGTCGACGTTCGCCATATGCCAATGGGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034097 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312 GO:1990823 GO:1990830

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

187

Amino Acids

21.54

Weight (kDa)

11.33

Isoelectric Point (pI)

118.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 61	1.2e-15	RNA recognition motif
zf-CCHC	PF00098	90 - 105	8.7e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23860 AT1G23860 AT1G23860 AT1G23860
fragaria_vesca	FvH4_4g34770
malus_domestica	MD13G1089900.v1.1 MD16G1090200.v1.1
prunus_persica	Prupe.1G255900_v2.0.a1 Prupe.1G255900_v2.0.a1
pyrus_communis	pycom13g07840 pycom16g07730
rosa_chinensis	RchiOBHm_Chr4g0444111
rosa_roxburghii	Rroxscaffold_5G00384700
rosa_rugosa	Rorug04G0349600 Rorug04G0349700
rosa_samantha	Rh4AG410700 Rh4BG422100 Rh4CG436500
rosa_wichuraiana	Rw4G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	35
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccI	GTMKAC	2 cut(s)	106, 535
AccII	CGCG	3 cut(s)	36, 306, 406
AciI	CCGC	2 cut(s)	404, 514
AclWI	GGATC	2 cut(s)	183, 468
AcsI	RAATTY	2 cut(s)	22, 62
AcyI	GRCGYC	1 cut(s)	430
AdeI	CACNNNGTG	1 cut(s)	500
AfiI	CCNNNNNNNGG	3 cut(s)	377, 455, 488
AflIII	ACRYGT	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	4 cut(s)	101, 202, 289, 465
AluI	AGCT	4 cut(s)	101, 202, 289, 465
Alw26I	GTCTC	1 cut(s)	513
AlwI	GGATC	2 cut(s)	183, 468
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	1 cut(s)	69
ApoI	RAATTY	2 cut(s)	22, 62
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	31, 296
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	63
BceAI	ACGGC	3 cut(s)	300, 438, 483
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	513
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	1 cut(s)	466
BglII	AGATCT	1 cut(s)	416
BisI	GCNGC	1 cut(s)	514
BlsI	GCNGC	1 cut(s)	515
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	28
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	2 cut(s)	139, 148
BpiI	GAAGAC	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	430
BsaJI	CCNNGG	3 cut(s)	316, 425, 454
Bsc4I	CCNNNNNNNGG	3 cut(s)	377, 455, 488
Bse3DI	GCAATG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	3 cut(s)	316, 425, 454
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	3 cut(s)	377, 455, 488
BseMI	GCAATG	1 cut(s)	94
BseRI	GAGGAG	3 cut(s)	411, 475, 498
Bsh1236I	CGCG	3 cut(s)	36, 306, 406
BshFI	GGCC	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	336
BslI	CCNNNNNNNGG	3 cut(s)	377, 455, 488
BsmAI	GTCTC	1 cut(s)	513
BsmFI	GGGAC	1 cut(s)	336
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	175, 416, 473
Bsp68I	TCGCGA	1 cut(s)	306
BspACI	CCGC	2 cut(s)	404, 514
BspANI	GGCC	1 cut(s)	71
BspFNI	CGCG	3 cut(s)	36, 306, 406
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	2 cut(s)	183, 468
BsrDI	GCAATG	1 cut(s)	94
BssECI	CCNNGG	3 cut(s)	316, 425, 454
BssMI	GATC	3 cut(s)	175, 416, 473
BssNI	GRCGYC	1 cut(s)	430
BssT1I	CCWWGG	1 cut(s)	425
Bst2UI	CCWGG	1 cut(s)	114
BstACI	GRCGYC	1 cut(s)	430
BstC8I	GCNNGC	3 cut(s)	304, 388, 404
BstDSI	CCRYGG	2 cut(s)	316, 454
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	3 cut(s)	36, 306, 406
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	3 cut(s)	178, 419, 476
BstMAI	GTCTC	1 cut(s)	513
BstMBI	GATC	3 cut(s)	175, 416, 473
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 167, 199, 312
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	466
BstUI	CGCG	3 cut(s)	36, 306, 406
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	2 cut(s)	416, 473
BstYI	RGATCY	2 cut(s)	416, 473
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	2 cut(s)	316, 454
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	442
BtuMI	TCGCGA	1 cut(s)	306
Cac8I	GCNNGC	3 cut(s)	304, 388, 404
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	28
CseI	GACGC	2 cut(s)	25, 419
CviJI	RGCY	9 cut(s)	71, 101, 117, 202, 289, 327, 345, 402, 465
CviKI_1	RGCY	9 cut(s)	71, 101, 117, 202, 289, 327, 345, 402, 465
DpnI	GATC	3 cut(s)	177, 418, 475
DpnII	GATC	3 cut(s)	175, 416, 473
DraIII	CACNNNGTG	1 cut(s)	500
DrdI	GACNNNNNNGTC	1 cut(s)	35
DseDI	GACNNNNNNGTC	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	425
Eco147I	AGGCCT	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	28
Eco88I	CYCGRG	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	425
FaiI	YATR	9 cut(s)	15, 210, 276, 378, 384, 398, 531, 547, 549
FalI	AAGNNNNNCTT	2 cut(s)	136, 168
FaqI	GGGAC	1 cut(s)	336
FauI	CCCGC	1 cut(s)	411
FauNDI	CATATG	1 cut(s)	547
FblI	GTMKAC	2 cut(s)	106, 535
Fnu4HI	GCNGC	1 cut(s)	514
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	514
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	514
HaeIII	GGCC	1 cut(s)	71
HgaI	GACGC	2 cut(s)	25, 419
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	430
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	536
HindII	GTYRAC	1 cut(s)	536
HinfI	GANTC	4 cut(s)	263, 367, 503, 521
HphI	GGTGA	2 cut(s)	31, 296
Hpy166II	GTNNAC	3 cut(s)	107, 494, 536
Hpy188III	TCNNGA	3 cut(s)	19, 305, 371
Hpy8I	GTNNAC	3 cut(s)	107, 494, 536
Hpy99I	CGWCG	5 cut(s)	249, 360, 363, 435, 540
HpyAV	CCTTC	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 167, 199, 312
HpySE526I	ACGT	1 cut(s)	538
Hsp92I	GRCGYC	1 cut(s)	430
HspAI	GCGC	1 cut(s)	168
Kzo9I	GATC	3 cut(s)	175, 416, 473
LmnI	GCTCC	2 cut(s)	199, 462
LpnPI	CCDG	5 cut(s)	79, 99, 126, 376, 384
LweI	GCATC	2 cut(s)	139, 148
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	538
MaeIII	GTNAC	2 cut(s)	37, 439
MalI	GATC	3 cut(s)	177, 418, 475
MboI	GATC	3 cut(s)	175, 416, 473
MboII	GAAGA	4 cut(s)	68, 74, 423, 426
MflI	RGATCY	2 cut(s)	416, 473
MluCI	AATT	2 cut(s)	22, 62
MluI	ACGCGT	1 cut(s)	34
MlyI	GAGTC	2 cut(s)	376, 515
MspR9I	CCNGG	1 cut(s)	114
Mva1269I	GAATGC	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	114
MvnI	CGCG	3 cut(s)	36, 306, 406
MwoI	GCNNNNNNNGC	4 cut(s)	158, 167, 199, 312
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	3 cut(s)	175, 416, 473
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	37
NruI	TCGCGA	1 cut(s)	306
PaeR7I	CTCGAG	1 cut(s)	128
PceI	AGGCCT	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 319
PctI	GAATGC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	263, 503
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	1 cut(s)	515
PleI	GAGTC	2 cut(s)	375, 515
PpsI	GAGTC	2 cut(s)	375, 515
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	28
PspXI	VCTCGAGB	1 cut(s)	128
PsuI	RGATCY	2 cut(s)	416, 473
RruI	TCGCGA	1 cut(s)	306
SalI	GTCGAC	1 cut(s)	534
SatI	GCNGC	1 cut(s)	514
Sau3AI	GATC	3 cut(s)	175, 416, 473
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	2 cut(s)	376, 515
ScrFI	CCNGG	1 cut(s)	114
SfaNI	GCATC	2 cut(s)	139, 148
SfcI	CTRYAG	1 cut(s)	466
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	28
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	22, 62
SseBI	AGGCCT	1 cut(s)	71
SsiI	CCGC	2 cut(s)	404, 514
SspMI	CTAG	1 cut(s)	348
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	1 cut(s)	425
TaiI	ACGT	1 cut(s)	541
TaqI	TCGA	6 cut(s)	54, 129, 135, 178, 322, 535
TasI	AATT	2 cut(s)	22, 62
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	2 cut(s)	263, 503
TscAI	CASTG	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	37
TspRI	CASTG	1 cut(s)	442
Van91I	CCANNNNNTGG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	2 cut(s)	22, 62
XhoI	CTCGAG	1 cut(s)	128
XmiI	GTMKAC	2 cut(s)	106, 535
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.