Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011799

Physical Location & Seq

Genomic Coordinates Reverse (-)

63936792 .. 63939992

Gene Structure 3201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGACTCGCGTTTACGTTGGGAATTTGGATCCCCGGGTGAGTGATAGGGATCTTGAAGATGAGTTTCGCATGTTCGGCGTTCTTCGCAGTGTGTGGGTTGCTCGGAGGCCACCGGGATATGCCTTTGTTGAATTTGATGATCACAGGGATGCTCTCGATGCAATTCAGAGATTGGATGGAAAAAATGGTTGGCGTGTGGAACTGTCCCATAACTCTAAGGGTGGTGGTGGAGGAGGCCGTGGCGGGCGTGGTGGAGGTGACGACTTGAAGTGTTATGAATGTGGTGAACCTGGTCACTTTGCTCGGGAGTGTCGTATGCGTGTTGGTTCACGAGGATTGGGTAGCGGAAGGCGCAGAAGTCCTTCCCCTCGACGTGGCCGCAGAAGTCCCAGTTACGATGGTTATGGGCGCAGGACTTATAGTCCACGTAGGAGGAGATCTCCTCCTCTACGACGTCGCACCCCATCACCTCTGCCTCGACGTGGACGCAGCTATAGCAGGTCTCCCCCATACCGCCATGCTCGACGTGTTTCACCTTATGCCAATGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034097 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312 GO:1990823 GO:1990830

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

184

Amino Acids

20.92

Weight (kDa)

11.31

Isoelectric Point (pI)

102.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 61	3.4e-16	RNA recognition motif
zf-CCHC	PF00098	90 - 105	1.3e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23860 AT1G23860 AT1G23860 AT1G23860
fragaria_vesca	FvH4_4g34770
malus_domestica	MD13G1089900.v1.1 MD16G1090200.v1.1
prunus_persica	Prupe.1G255900_v2.0.a1 Prupe.1G255900_v2.0.a1
pyrus_communis	pycom13g07840 pycom16g07730
rosa_chinensis	RchiOBHm_Chr4g0444111
rosa_roxburghii	Rroxscaffold_5G00384700
rosa_rugosa	Rorug04G0349600 Rorug04G0349700
rosa_samantha	Rh4AG410700 Rh4BG422100 Rh4CG436500
rosa_wichuraiana	Rw4G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	457
Acc36I	ACCTGC	1 cut(s)	489
AccII	CGCG	1 cut(s)	9
AciI	CCGC	4 cut(s)	243, 345, 379, 514
AclWI	GGATC	3 cut(s)	23, 36, 57
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	2 cut(s)	22, 131
AcyI	GRCGYC	1 cut(s)	454
AfiI	CCNNNNNNNGG	2 cut(s)	374, 482
AflIII	ACRYGT	1 cut(s)	526
AgsI	TTSAA	3 cut(s)	56, 131, 268
AhdI	GACNNNNNGTC	1 cut(s)	420
AjiI	CACGTC	3 cut(s)	374, 482, 527
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AluBI	AGCT	1 cut(s)	492
AluI	AGCT	1 cut(s)	492
Alw26I	GTCTC	1 cut(s)	507
AlwI	GGATC	3 cut(s)	23, 36, 57
Ama87I	CYCGRG	2 cut(s)	33, 303
AoxI	GGCC	3 cut(s)	107, 235, 376
ApeKI	GCWGC	1 cut(s)	489
ApoI	RAATTY	2 cut(s)	22, 131
Asp700I	GAANNNNTTC	1 cut(s)	361
AspLEI	GCGC	2 cut(s)	354, 411
AsuC2I	CCSGG	3 cut(s)	34, 35, 114
AsuHPI	GGTGA	5 cut(s)	49, 269, 296, 459, 525
AvaI	CYCGRG	2 cut(s)	33, 303
BamHI	GGATCC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	501
BccI	CCATC	3 cut(s)	170, 392, 472
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	139
BcnI	CCSGG	3 cut(s)	34, 35, 114
BcoDI	GTCTC	1 cut(s)	507
BfmI	CTRYAG	1 cut(s)	493
BfuAI	ACCTGC	1 cut(s)	489
BglII	AGATCT	1 cut(s)	437
BisI	GCNGC	2 cut(s)	379, 490
BlsI	GCNGC	2 cut(s)	380, 491
Bme1390I	CCNGG	4 cut(s)	34, 35, 114, 291
BmeRI	GACNNNNNGTC	1 cut(s)	420
BmeT110I	CYCGRG	2 cut(s)	33, 303
BmgBI	CACGTC	3 cut(s)	374, 482, 527
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	4 cut(s)	34, 35, 114, 291
BmrI	ACTGGG	1 cut(s)	384
BmsI	GCATC	2 cut(s)	139, 148
BmuI	ACTGGG	1 cut(s)	384
BplI	GAGNNNNNCTC	4 cut(s)	424, 456, 427, 459
BpuMI	CCSGG	3 cut(s)	34, 35, 114
BsaAI	YACGTR	1 cut(s)	428
BsaBI	GATNNNNATC	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	454
BsaI	GGTCTC	1 cut(s)	507
BsaJI	CCNNGG	3 cut(s)	32, 33, 238
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 482
Bse1I	ACTGG	1 cut(s)	390
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	3 cut(s)	32, 33, 238
BseGI	GGATG	2 cut(s)	154, 181
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	374, 482
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	4 cut(s)	246, 432, 435, 448
BseXI	GCAGC	1 cut(s)	501
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	109, 237, 378
BsiHKCI	CYCGRG	2 cut(s)	33, 303
BsiSI	CCGG	2 cut(s)	34, 113
BslFI	GGGAC	2 cut(s)	190, 372
BslI	CCNNNNNNNGG	2 cut(s)	374, 482
BsmAI	GTCTC	1 cut(s)	507
BsmFI	GGGAC	2 cut(s)	190, 372
BsnI	GGCC	3 cut(s)	109, 237, 378
Bso31I	GGTCTC	1 cut(s)	507
BsoBI	CYCGRG	2 cut(s)	33, 303
Bsp143I	GATC	4 cut(s)	28, 49, 139, 437
BspACI	CCGC	4 cut(s)	243, 345, 379, 514
BspANI	GGCC	3 cut(s)	109, 237, 378
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	489
BspPI	GGATC	3 cut(s)	23, 36, 57
BspTNI	GGTCTC	1 cut(s)	507
BsrI	ACTGG	1 cut(s)	390
BssECI	CCNNGG	3 cut(s)	32, 33, 238
BssMI	GATC	4 cut(s)	28, 49, 139, 437
BssNI	GRCGYC	1 cut(s)	454
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	454
BstBAI	YACGTR	1 cut(s)	428
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	2 cut(s)	154, 181
BstFNI	CGCG	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	354, 411
BstKTI	GATC	4 cut(s)	31, 52, 142, 440
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	4 cut(s)	28, 49, 139, 437
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 84, 158, 351, 495
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	4 cut(s)	32, 33, 112, 289
BstSFI	CTRYAG	1 cut(s)	493
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	501
BstX2I	RGATCY	3 cut(s)	28, 49, 437
BstYI	RGATCY	3 cut(s)	28, 49, 437
BsuRI	GGCC	3 cut(s)	109, 237, 378
BtgI	CCRYGG	1 cut(s)	238
BtrI	CACGTC	3 cut(s)	374, 482, 527
BtsCI	GGATG	2 cut(s)	154, 181
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	94
BveI	ACCTGC	1 cut(s)	489
Cac8I	GCNNGC	1 cut(s)	245
CfoI	GCGC	2 cut(s)	354, 411
Cfr9I	CCCGGG	1 cut(s)	33
CseI	GACGC	1 cut(s)	495
CsiI	ACCWGGT	1 cut(s)	289
CviAII	CATG	2 cut(s)	70, 518
CviJI	RGCY	4 cut(s)	109, 237, 378, 492
CviKI_1	RGCY	4 cut(s)	109, 237, 378, 492
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	4 cut(s)	30, 51, 141, 439
DpnII	GATC	4 cut(s)	28, 49, 139, 437
DriI	GACNNNNNGTC	1 cut(s)	420
EaeI	YGGCCR	1 cut(s)	376
Eam1105I	GACNNNNNGTC	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	507
Eco88I	CYCGRG	2 cut(s)	33, 303
EcoRII	CCWGG	1 cut(s)	289
FaeI	CATG	2 cut(s)	73, 521
FaqI	GGGAC	2 cut(s)	190, 372
FatI	CATG	2 cut(s)	69, 517
FauI	CCCGC	1 cut(s)	236
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	379, 490
FokI	GGATG	2 cut(s)	161, 188
Fsp4HI	GCNGC	2 cut(s)	379, 490
GlaI	GCGC	2 cut(s)	353, 410
GluI	GCNGC	2 cut(s)	379, 490
HaeIII	GGCC	3 cut(s)	109, 237, 378
HapII	CCGG	2 cut(s)	34, 113
HgaI	GACGC	1 cut(s)	495
HhaI	GCGC	2 cut(s)	354, 411
Hin1I	GRCGYC	1 cut(s)	454
Hin1II	CATG	2 cut(s)	73, 521
Hin6I	GCGC	2 cut(s)	352, 409
HinP1I	GCGC	2 cut(s)	352, 409
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	34, 113
HphI	GGTGA	5 cut(s)	49, 269, 296, 459, 525
Hpy166II	GTNNAC	5 cut(s)	13, 287, 329, 425, 485
Hpy188I	TCNGA	2 cut(s)	105, 168
Hpy188III	TCNNGA	4 cut(s)	53, 155, 305, 330
Hpy8I	GTNNAC	5 cut(s)	13, 287, 329, 425, 485
Hpy99I	CGWCG	5 cut(s)	375, 456, 459, 483, 528
HpyAV	CCTTC	2 cut(s)	342, 372
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	6 cut(s)	15, 373, 427, 454, 481, 526
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 84, 158, 351, 495
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	6 cut(s)	15, 373, 427, 454, 481, 526
Hsp92I	GRCGYC	1 cut(s)	454
Hsp92II	CATG	2 cut(s)	73, 521
HspAI	GCGC	2 cut(s)	352, 409
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	28, 49, 139, 437
LpnPI	CCDG	8 cut(s)	47, 126, 130, 276, 303, 397, 403, 484
Lsp1109I	GCAGC	1 cut(s)	501
LweI	GCATC	2 cut(s)	139, 148
MabI	ACCWGGT	1 cut(s)	289
MaeII	ACGT	6 cut(s)	15, 373, 427, 454, 481, 526
MaeIII	GTNAC	3 cut(s)	257, 293, 392
MalI	GATC	4 cut(s)	30, 51, 141, 439
MboI	GATC	4 cut(s)	28, 49, 139, 437
MboII	GAAGA	2 cut(s)	68, 74
MflI	RGATCY	3 cut(s)	28, 49, 437
MluCI	AATT	3 cut(s)	22, 131, 162
MroXI	GAANNNNTTC	1 cut(s)	361
MslI	CAYNNNNRTG	1 cut(s)	147
MspI	CCGG	2 cut(s)	34, 113
MspR9I	CCNGG	4 cut(s)	34, 35, 114, 291
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	5 cut(s)	75, 84, 158, 351, 495
NciI	CCSGG	3 cut(s)	34, 35, 114
NdeII	GATC	4 cut(s)	28, 49, 139, 437
NlaIII	CATG	2 cut(s)	73, 521
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	2 cut(s)	257, 293
NspI	RCATGY	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	361
PkrI	GCNGC	2 cut(s)	380, 491
Ppu21I	YACGTR	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	30
PsuI	RGATCY	3 cut(s)	28, 49, 437
RseI	CAYNNNNRTG	1 cut(s)	147
SatI	GCNGC	2 cut(s)	379, 490
Sau3AI	GATC	4 cut(s)	28, 49, 139, 437
ScrFI	CCNGG	4 cut(s)	34, 35, 114, 291
SexAI	ACCWGGT	1 cut(s)	289
SfaNI	GCATC	2 cut(s)	139, 148
SfcI	CTRYAG	1 cut(s)	493
SmaI	CCCGGG	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	3 cut(s)	22, 131, 162
SsiI	CCGC	4 cut(s)	243, 345, 379, 514
StyD4I	CCNGG	4 cut(s)	32, 33, 112, 289
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	6 cut(s)	18, 376, 430, 457, 484, 529
TaqI	TCGA	4 cut(s)	156, 370, 478, 523
TasI	AATT	3 cut(s)	22, 131, 162
TauI	GCSGC	1 cut(s)	381
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	2 cut(s)	257, 293
TseI	GCWGC	1 cut(s)	489
Tsp45I	GTSAC	2 cut(s)	257, 293
TspDTI	ATGAA	1 cut(s)	291
TspMI	CCCGGG	1 cut(s)	33
TspRI	CASTG	1 cut(s)	94
XapI	RAATTY	2 cut(s)	22, 131
XceI	RCATGY	1 cut(s)	73
XmaI	CCCGGG	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	361
ZraI	GACGTC	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.