Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011799

Physical Location & Seq

Genomic Coordinates Reverse (-)

32345809 .. 32348789

Gene Structure 2981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGACTCGTGTTTACGTCGGCAATTTGGATCCTCGGGTGAGCGATAGGGATCTTGAAGATGAGTTTCGCATGTTCGGCGTTCTTCGCAGTGTGTGGGTTGCTCGGAGGCCACCGGGATATGCCTTCATCGAATTCGATGATCACAGGGATGCTCTGGATGCAATTCAGAGATTGGATGGAAAAAATGGTTGGCGTGTGGAGCTGTCTCATAATTCCAAAGGTGGTGGTGGTGGTGGTGGAGGCCGTGGTGGGCGTGGTGGAGGTGACGATTTGAAGTGTTATGAATGTGGTGAACCTGGACATTTTGCACGAGAGTGTCGTATGCGTGTTGGTTCACGGGGATTGGGTAGTGGAAGACGGAGAAGTCCTTCCCCTCGACGTGGCCGTAGAAGTCCCAGTTATGATGGTTATGGGCGCAGGGCTTATAGTCCACGCAGGAGAAGATCTCCTCCTCCTCTACGACGTCGCACCCCATCACCTCCTCTTCGACGTGGACGTAGCTTCAGCAGGTCTCCCCCATACCGCCATGCTCGACGTGTTTCACCTTATGCCAATGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034097 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312 GO:1990823 GO:1990830

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

188

Amino Acids

21.1

Weight (kDa)

11.37

Isoelectric Point (pI)

106.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 61	1e-15	RNA recognition motif
zf-CCHC	PF00098	92 - 107	1.3e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23860 AT1G23860 AT1G23860 AT1G23860
fragaria_vesca	FvH4_4g34770
malus_domestica	MD13G1089900.v1.1 MD16G1090200.v1.1
prunus_persica	Prupe.1G255900_v2.0.a1 Prupe.1G255900_v2.0.a1
pyrus_communis	pycom13g07840 pycom16g07730
rosa_chinensis	RchiOBHm_Chr4g0444111
rosa_roxburghii	Rroxscaffold_5G00384700
rosa_rugosa	Rorug04G0349600 Rorug04G0349700
rosa_samantha	Rh4AG410700 Rh4BG422100 Rh4CG436500
rosa_wichuraiana	Rw4G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	363
AatII	GACGTC	1 cut(s)	466
Acc36I	ACCTGC	1 cut(s)	498
AciI	CCGC	1 cut(s)	523
AclWI	GGATC	3 cut(s)	23, 36, 57
AcoI	YGGCCR	1 cut(s)	382
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	487
AcyI	GRCGYC	1 cut(s)	463
AfiI	CCNNNNNNNGG	1 cut(s)	380
AflIII	ACRYGT	1 cut(s)	535
AgsI	TTSAA	2 cut(s)	56, 274
AjiI	CACGTC	3 cut(s)	380, 491, 536
AjnI	CCWGG	1 cut(s)	295
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AleI	CACNNNNGTG	1 cut(s)	313
AluBI	AGCT	2 cut(s)	202, 501
AluI	AGCT	2 cut(s)	202, 501
Alw26I	GTCTC	2 cut(s)	210, 516
AlwI	GGATC	3 cut(s)	23, 36, 57
Ama87I	CYCGRG	1 cut(s)	33
AoxI	GGCC	3 cut(s)	107, 241, 382
ApoI	RAATTY	1 cut(s)	131
Asp700I	GAANNNNTTC	1 cut(s)	367
AspLEI	GCGC	1 cut(s)	417
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	5 cut(s)	49, 275, 302, 468, 534
AvaI	CYCGRG	1 cut(s)	33
BamHI	GGATCC	1 cut(s)	28
BauI	CACGAG	2 cut(s)	6, 309
BbsI	GAAGAC	1 cut(s)	361
BccI	CCATC	3 cut(s)	170, 398, 481
BceAI	ACGGC	2 cut(s)	228, 369
BciT130I	CCWGG	1 cut(s)	297
BclI	TGATCA	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	2 cut(s)	210, 516
BfuAI	ACCTGC	1 cut(s)	498
BglII	AGATCT	1 cut(s)	443
Bme1390I	CCNGG	2 cut(s)	114, 297
BmeT110I	CYCGRG	1 cut(s)	33
BmgBI	CACGTC	3 cut(s)	380, 491, 536
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	2 cut(s)	114, 297
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	139, 148
BmuI	ACTGGG	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	361
BplI	GAGNNNNNCTC	2 cut(s)	430, 462
BpuMI	CCSGG	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	516
BsaJI	CCNNGG	2 cut(s)	32, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	1 cut(s)	396
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	32, 244
BseGI	GGATG	3 cut(s)	154, 163, 181
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	4 cut(s)	438, 441, 444, 471
BshFI	GGCC	3 cut(s)	109, 243, 384
BsiHKCI	CYCGRG	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	2 cut(s)	210, 516
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	3 cut(s)	109, 243, 384
Bso31I	GGTCTC	1 cut(s)	516
BsoBI	CYCGRG	1 cut(s)	33
Bsp143I	GATC	4 cut(s)	28, 49, 139, 443
BspACI	CCGC	1 cut(s)	523
BspANI	GGCC	3 cut(s)	109, 243, 384
BspLI	GGNNCC	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	498
BspPI	GGATC	3 cut(s)	23, 36, 57
BspTNI	GGTCTC	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	2 cut(s)	32, 244
BssMI	GATC	4 cut(s)	28, 49, 139, 443
BssNI	GRCGYC	1 cut(s)	463
BssSI	CACGAG	2 cut(s)	6, 309
Bst2BI	CACGAG	2 cut(s)	6, 309
Bst2UI	CCWGG	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	489
BstACI	GRCGYC	1 cut(s)	463
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	3 cut(s)	154, 163, 181
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	4 cut(s)	31, 52, 142, 446
BstMAI	GTCTC	2 cut(s)	210, 516
BstMBI	GATC	4 cut(s)	28, 49, 139, 443
BstMWI	GCNNNNNNNGC	4 cut(s)	75, 84, 158, 199
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	112, 295
BstV2I	GAAGAC	1 cut(s)	361
BstX2I	RGATCY	3 cut(s)	28, 49, 443
BstYI	RGATCY	3 cut(s)	28, 49, 443
BsuRI	GGCC	3 cut(s)	109, 243, 384
BtgI	CCRYGG	1 cut(s)	244
BtrI	CACGTC	3 cut(s)	380, 491, 536
BtsCI	GGATG	3 cut(s)	154, 163, 181
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	94
BveI	ACCTGC	1 cut(s)	498
CfoI	GCGC	1 cut(s)	417
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	2 cut(s)	70, 527
CviJI	RGCY	6 cut(s)	109, 202, 243, 384, 422, 501
CviKI_1	RGCY	6 cut(s)	109, 202, 243, 384, 422, 501
DpnI	GATC	4 cut(s)	30, 51, 141, 445
DpnII	GATC	4 cut(s)	28, 49, 139, 443
DrdI	GACNNNNNNGTC	1 cut(s)	363
DseDI	GACNNNNNNGTC	1 cut(s)	363
EaeI	YGGCCR	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
Eco31I	GGTCTC	1 cut(s)	516
Eco57I	CTGAAG	1 cut(s)	487
Eco88I	CYCGRG	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	295
FaeI	CATG	2 cut(s)	73, 530
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	2 cut(s)	69, 526
FbaI	TGATCA	1 cut(s)	139
FokI	GGATG	3 cut(s)	161, 170, 188
GlaI	GCGC	1 cut(s)	416
HaeIII	GGCC	3 cut(s)	109, 243, 384
HapII	CCGG	1 cut(s)	113
HhaI	GCGC	1 cut(s)	417
Hin1I	GRCGYC	1 cut(s)	463
Hin1II	CATG	2 cut(s)	73, 530
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	5 cut(s)	49, 275, 302, 468, 534
Hpy166II	GTNNAC	5 cut(s)	13, 293, 335, 431, 494
Hpy188I	TCNGA	2 cut(s)	105, 168
Hpy188III	TCNNGA	2 cut(s)	53, 155
Hpy8I	GTNNAC	5 cut(s)	13, 293, 335, 431, 494
Hpy99I	CGWCG	6 cut(s)	20, 381, 465, 468, 492, 537
HpyAV	CCTTC	2 cut(s)	133, 378
HpyCH4IV	ACGT	6 cut(s)	15, 379, 463, 490, 496, 535
HpyCH4V	TGCA	2 cut(s)	161, 308
HpyF10VI	GCNNNNNNNGC	4 cut(s)	75, 84, 158, 199
HpySE526I	ACGT	6 cut(s)	15, 379, 463, 490, 496, 535
Hsp92I	GRCGYC	1 cut(s)	463
Hsp92II	CATG	2 cut(s)	73, 530
HspAI	GCGC	1 cut(s)	415
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	28, 49, 139, 443
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	9 cut(s)	126, 130, 140, 282, 309, 403, 409, 421, 493
LweI	GCATC	2 cut(s)	139, 148
MaeII	ACGT	6 cut(s)	15, 379, 463, 490, 496, 535
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	4 cut(s)	30, 51, 141, 445
MboI	GATC	4 cut(s)	28, 49, 139, 443
MboII	GAAGA	5 cut(s)	68, 74, 366, 453, 476
MflI	RGATCY	3 cut(s)	28, 49, 443
MluCI	AATT	4 cut(s)	22, 131, 162, 211
MroXI	GAANNNNTTC	1 cut(s)	367
MslI	CAYNNNNRTG	2 cut(s)	147, 313
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	114, 297
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	4 cut(s)	75, 84, 158, 199
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	4 cut(s)	28, 49, 139, 443
NlaIII	CATG	2 cut(s)	73, 530
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	3 cut(s)	316, 382, 493
PdmI	GAANNNNTTC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	30
PsuI	RGATCY	3 cut(s)	28, 49, 443
RseI	CAYNNNNRTG	2 cut(s)	147, 313
Sau3AI	GATC	4 cut(s)	28, 49, 139, 443
ScrFI	CCNGG	2 cut(s)	114, 297
SfaNI	GCATC	2 cut(s)	139, 148
SmiMI	CAYNNNNRTG	2 cut(s)	147, 313
Sse9I	AATT	4 cut(s)	22, 131, 162, 211
SsiI	CCGC	1 cut(s)	523
StyD4I	CCNGG	2 cut(s)	112, 295
TaiI	ACGT	6 cut(s)	18, 382, 466, 493, 499, 538
TaqI	TCGA	5 cut(s)	129, 135, 376, 487, 532
TasI	AATT	4 cut(s)	22, 131, 162, 211
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	115, 297
TspGWI	ACGGA	1 cut(s)	373
TspRI	CASTG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	367
ZraI	GACGTC	1 cut(s)	464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.