Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011799

Physical Location & Seq

Genomic Coordinates Reverse (-)

64963189 .. 64966215

Gene Structure 3027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41181

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGACTCGCGTTTACGTTGGGAACTTGGATCCTCGAGTGAGTGATAGGGATCTTGAAGATGAGTTTCGCATGTTCGGCGTTCTTCGCAGTGTGTGGGTTGCTCGGAGGCCACCGGGATATGCCTTTGTTGAATTTGATGACCACAGGGATGCTCTTGATGCCATTCAGAGATTGGATGGAAAAAATGGTTGGCGTGTGGAACTGTCCCATAACTCTAAGGGTGGTGGTGGTGGTGGTGGAGGCCGTGGCGGGCGTGGTGGAGGTGACGACTTGAAGTGTTATGAATGTGGTGAACCTGGTCACTTTGCTCGAGAGTGTCGTATGCGTGTTGGTTCACGAGGATTGGGTAGCGGAAGGCGCAGAAGTCCTTCCCCTCGACGTGGCCGCACAAGTCCCAGTTACGATGGTTATGGGCATGGGCGCAGGACTTATAGTCCACGTAGGAGGAGATCTCCTCCTCTACGACGTCGCACCCCATCACCTCTGCCTCGACGTGGACGCAGCTACAGCAGGTCTCCCCCATACCGCCATGCTCGACGTGTTTCACCTTATGCCAATGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034097 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312 GO:1990823 GO:1990830

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

188

Amino Acids

21.17

Weight (kDa)

11.24

Isoelectric Point (pI)

95.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 61	3.5e-16	RNA recognition motif
zf-CCHC	PF00098	92 - 107	1.3e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23860 AT1G23860 AT1G23860 AT1G23860
fragaria_vesca	FvH4_4g34770
malus_domestica	MD13G1089900.v1.1 MD16G1090200.v1.1
prunus_persica	Prupe.1G255900_v2.0.a1 Prupe.1G255900_v2.0.a1
pyrus_communis	pycom13g07840 pycom16g07730
rosa_chinensis	RchiOBHm_Chr4g0444111
rosa_roxburghii	Rroxscaffold_5G00384700
rosa_rugosa	Rorug04G0349600 Rorug04G0349700
rosa_samantha	Rh4AG410700 Rh4BG422100 Rh4CG436500
rosa_wichuraiana	Rw4G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	469
Acc36I	ACCTGC	1 cut(s)	501
AccII	CGCG	1 cut(s)	9
AciI	CCGC	4 cut(s)	249, 351, 385, 526
AclWI	GGATC	3 cut(s)	23, 36, 57
AcoI	YGGCCR	1 cut(s)	382
AcsI	RAATTY	1 cut(s)	131
AcyI	GRCGYC	1 cut(s)	466
AfiI	CCNNNNNNNGG	2 cut(s)	380, 494
AflIII	ACRYGT	1 cut(s)	538
AgsI	TTSAA	3 cut(s)	56, 131, 274
AhdI	GACNNNNNGTC	1 cut(s)	432
AjiI	CACGTC	3 cut(s)	380, 494, 539
AjnI	CCWGG	1 cut(s)	295
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AluBI	AGCT	1 cut(s)	504
AluI	AGCT	1 cut(s)	504
Alw26I	GTCTC	1 cut(s)	519
AlwI	GGATC	3 cut(s)	23, 36, 57
Ama87I	CYCGRG	2 cut(s)	33, 309
AoxI	GGCC	3 cut(s)	107, 241, 382
ApeKI	GCWGC	1 cut(s)	501
ApoI	RAATTY	1 cut(s)	131
Asp700I	GAANNNNTTC	1 cut(s)	367
AspLEI	GCGC	2 cut(s)	360, 423
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	4 cut(s)	275, 302, 471, 537
AvaI	CYCGRG	2 cut(s)	33, 309
BamHI	GGATCC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	513
BccI	CCATC	3 cut(s)	170, 398, 484
BceAI	ACGGC	1 cut(s)	228
BciT130I	CCWGG	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	519
BfmI	CTRYAG	1 cut(s)	505
BfuAI	ACCTGC	1 cut(s)	501
BglII	AGATCT	1 cut(s)	449
BisI	GCNGC	2 cut(s)	385, 502
BlsI	GCNGC	2 cut(s)	386, 503
Bme1390I	CCNGG	2 cut(s)	114, 297
BmeRI	GACNNNNNGTC	1 cut(s)	432
BmeT110I	CYCGRG	2 cut(s)	33, 309
BmgBI	CACGTC	3 cut(s)	380, 494, 539
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	2 cut(s)	114, 297
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	139, 148
BmuI	ACTGGG	1 cut(s)	390
BplI	GAGNNNNNCTC	4 cut(s)	436, 468, 439, 471
BpuMI	CCSGG	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	466
BsaI	GGTCTC	1 cut(s)	519
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	2 cut(s)	380, 494
Bse1I	ACTGG	1 cut(s)	396
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	2 cut(s)	154, 181
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	380, 494
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	3 cut(s)	444, 447, 460
BseXI	GCAGC	1 cut(s)	513
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	109, 243, 384
BsiHKCI	CYCGRG	2 cut(s)	33, 309
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	2 cut(s)	190, 378
BslI	CCNNNNNNNGG	2 cut(s)	380, 494
BsmAI	GTCTC	1 cut(s)	519
BsmFI	GGGAC	2 cut(s)	190, 378
BsnI	GGCC	3 cut(s)	109, 243, 384
Bso31I	GGTCTC	1 cut(s)	519
BsoBI	CYCGRG	2 cut(s)	33, 309
Bsp143I	GATC	3 cut(s)	28, 49, 449
BspACI	CCGC	4 cut(s)	249, 351, 385, 526
BspANI	GGCC	3 cut(s)	109, 243, 384
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	501
BspPI	GGATC	3 cut(s)	23, 36, 57
BspTNI	GGTCTC	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	3 cut(s)	28, 49, 449
BssNI	GRCGYC	1 cut(s)	466
BssSI	CACGAG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	466
BstBAI	YACGTR	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	154, 181
BstFNI	CGCG	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	360, 423
BstKTI	GATC	3 cut(s)	31, 52, 452
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	3 cut(s)	28, 49, 449
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 84, 158, 357, 507
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	112, 295
BstSFI	CTRYAG	1 cut(s)	505
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	513
BstX2I	RGATCY	3 cut(s)	28, 49, 449
BstYI	RGATCY	3 cut(s)	28, 49, 449
BsuRI	GGCC	3 cut(s)	109, 243, 384
BtgI	CCRYGG	1 cut(s)	244
BtrI	CACGTC	3 cut(s)	380, 494, 539
BtsCI	GGATG	2 cut(s)	154, 181
BtsI	GCAGTG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	94
BveI	ACCTGC	1 cut(s)	501
Cac8I	GCNNGC	1 cut(s)	251
CfoI	GCGC	2 cut(s)	360, 423
CseI	GACGC	1 cut(s)	507
CsiI	ACCWGGT	1 cut(s)	295
CviAII	CATG	3 cut(s)	70, 416, 530
CviJI	RGCY	4 cut(s)	109, 243, 384, 504
CviKI_1	RGCY	4 cut(s)	109, 243, 384, 504
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	3 cut(s)	30, 51, 451
DpnII	GATC	3 cut(s)	28, 49, 449
DriI	GACNNNNNGTC	1 cut(s)	432
EaeI	YGGCCR	1 cut(s)	382
Eam1105I	GACNNNNNGTC	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	519
Eco88I	CYCGRG	2 cut(s)	33, 309
EcoRII	CCWGG	1 cut(s)	295
FaeI	CATG	3 cut(s)	73, 419, 533
FaqI	GGGAC	2 cut(s)	190, 378
FatI	CATG	3 cut(s)	69, 415, 529
FauI	CCCGC	1 cut(s)	242
Fnu4HI	GCNGC	2 cut(s)	385, 502
FokI	GGATG	2 cut(s)	161, 188
Fsp4HI	GCNGC	2 cut(s)	385, 502
GlaI	GCGC	2 cut(s)	359, 422
GluI	GCNGC	2 cut(s)	385, 502
HaeIII	GGCC	3 cut(s)	109, 243, 384
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	507
HhaI	GCGC	2 cut(s)	360, 423
Hin1I	GRCGYC	1 cut(s)	466
Hin1II	CATG	3 cut(s)	73, 419, 533
Hin6I	GCGC	2 cut(s)	358, 421
HinP1I	GCGC	2 cut(s)	358, 421
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	4 cut(s)	275, 302, 471, 537
Hpy166II	GTNNAC	5 cut(s)	13, 293, 335, 437, 497
Hpy188I	TCNGA	2 cut(s)	105, 168
Hpy188III	TCNNGA	4 cut(s)	53, 155, 311, 336
Hpy8I	GTNNAC	5 cut(s)	13, 293, 335, 437, 497
Hpy99I	CGWCG	5 cut(s)	381, 468, 471, 495, 540
HpyAV	CCTTC	2 cut(s)	348, 378
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	6 cut(s)	15, 379, 439, 466, 493, 538
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 84, 158, 357, 507
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	6 cut(s)	15, 379, 439, 466, 493, 538
Hsp92I	GRCGYC	1 cut(s)	466
Hsp92II	CATG	3 cut(s)	73, 419, 533
HspAI	GCGC	2 cut(s)	358, 421
Kzo9I	GATC	3 cut(s)	28, 49, 449
LpnPI	CCDG	7 cut(s)	126, 130, 282, 309, 409, 409, 496
Lsp1109I	GCAGC	1 cut(s)	513
LweI	GCATC	2 cut(s)	139, 148
MabI	ACCWGGT	1 cut(s)	295
MaeII	ACGT	6 cut(s)	15, 379, 439, 466, 493, 538
MaeIII	GTNAC	3 cut(s)	263, 299, 398
MalI	GATC	3 cut(s)	30, 51, 451
MboI	GATC	3 cut(s)	28, 49, 449
MboII	GAAGA	2 cut(s)	68, 74
MflI	RGATCY	3 cut(s)	28, 49, 449
MluCI	AATT	1 cut(s)	131
MroXI	GAANNNNTTC	1 cut(s)	367
MslI	CAYNNNNRTG	1 cut(s)	147
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	114, 297
MvaI	CCWGG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	5 cut(s)	75, 84, 158, 357, 507
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	3 cut(s)	28, 49, 449
NlaIII	CATG	3 cut(s)	73, 419, 533
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	2 cut(s)	263, 299
NspI	RCATGY	1 cut(s)	73
PaeR7I	CTCGAG	2 cut(s)	33, 309
PcsI	WCGNNNNNNNCGW	1 cut(s)	316
PdmI	GAANNNNTTC	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	386, 503
Ppu21I	YACGTR	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	30
PspXI	VCTCGAGB	1 cut(s)	33
PsuI	RGATCY	3 cut(s)	28, 49, 449
RseI	CAYNNNNRTG	1 cut(s)	147
SatI	GCNGC	2 cut(s)	385, 502
Sau3AI	GATC	3 cut(s)	28, 49, 449
ScrFI	CCNGG	2 cut(s)	114, 297
SexAI	ACCWGGT	1 cut(s)	295
SfaNI	GCATC	2 cut(s)	139, 148
SfcI	CTRYAG	1 cut(s)	505
Sfr274I	CTCGAG	2 cut(s)	33, 309
SlaI	CTCGAG	2 cut(s)	33, 309
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	2 cut(s)	33, 309
SmoI	CTYRAG	2 cut(s)	33, 309
Sse9I	AATT	1 cut(s)	131
SsiI	CCGC	4 cut(s)	249, 351, 385, 526
StyD4I	CCNGG	2 cut(s)	112, 295
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	6 cut(s)	18, 382, 442, 469, 496, 541
TaqI	TCGA	5 cut(s)	34, 310, 376, 490, 535
TasI	AATT	1 cut(s)	131
TauI	GCSGC	1 cut(s)	387
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	2 cut(s)	263, 299
TseI	GCWGC	1 cut(s)	501
Tsp45I	GTSAC	2 cut(s)	263, 299
TspDTI	ATGAA	1 cut(s)	297
TspRI	CASTG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	1 cut(s)	73
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XhoI	CTCGAG	2 cut(s)	33, 309
XmnI	GAANNNNTTC	1 cut(s)	367
ZraI	GACGTC	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.