Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011799

Physical Location & Seq

Genomic Coordinates Reverse (-)

26621959 .. 26625385

Gene Structure 3427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G255900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCTCGGGTTTATGTTGGGAATTTAGATCCTCGAGTGAATGAAAGGGATTTGGAAGATGAATTTCGGATGTTCGGTGTTCTTCGAGGTGTATGGGTGGCTCGAAGACCGCCCGGATATGCGTTTATTGAATTTGACGATCGCCGGGATGCTCTAGATGCAATTCAAGCTGTGGATGGAAAAAATGGTTGGCGTGTCGAGCTTTCTCACAATTCTAAGGGTGGTGGAGGCCGTGGTGGTGGTGGAGGACGCGGGCGCGGTGGAGGTGAGGACTTAAGGTGTTATGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAATGTCGCTTGCGTATTGGTTCACGAGGATTGGGTAGCGGAAGGCGCCGAAGTCCATCTCCTCGACGCCGCAGAAGTCCCAGTTATGATGGTTATGGACGCAGGAGCTATAGTCCGCGTAGGAGAAGATCTCCTCCACGACGTCGTAGTGTCACACCTCCTCGACGTGGACGAAGCTACAGTAGGTCTCCTCCATATCGCCCTGCTCGTCGTGCTTCACCTTATGCCAATGGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034097 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312 GO:1990823 GO:1990830

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

185

Amino Acids

20.78

Weight (kDa)

11.41

Isoelectric Point (pI)

113.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23860 AT1G23860 AT1G23860 AT1G23860
fragaria_vesca	FvH4_4g34770
malus_domestica	MD13G1089900.v1.1 MD16G1090200.v1.1
prunus_persica	Prupe.1G255900_v2.0.a1 Prupe.1G255900_v2.0.a1
pyrus_communis	pycom13g07840 pycom16g07730
rosa_chinensis	RchiOBHm_Chr4g0444111
rosa_roxburghii	Rroxscaffold_5G00384700
rosa_rugosa	Rorug04G0349600 Rorug04G0349700
rosa_samantha	Rh4AG410700 Rh4BG422100 Rh4CG436500
rosa_wichuraiana	Rw4G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	460
AccB1I	GGYRCC	1 cut(s)	360
AccII	CGCG	3 cut(s)	252, 258, 433
AciI	CCGC	6 cut(s)	110, 252, 258, 354, 385, 431
AclWI	GGATC	1 cut(s)	23
AcsI	RAATTY	3 cut(s)	22, 62, 131
AcyI	GRCGYC	3 cut(s)	361, 382, 457
AfiI	CCNNNNNNNGG	1 cut(s)	482
AflII	CTTAAG	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	131, 167
AjiI	CACGTC	1 cut(s)	482
AjnI	CCWGG	1 cut(s)	298
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AluBI	AGCT	4 cut(s)	170, 202, 423, 492
AluI	AGCT	4 cut(s)	170, 202, 423, 492
Alw26I	GTCTC	1 cut(s)	507
AlwI	GGATC	1 cut(s)	23
Ama87I	CYCGRG	2 cut(s)	6, 33
AoxI	GGCC	1 cut(s)	229
ApoI	RAATTY	3 cut(s)	22, 62, 131
AspLEI	GCGC	2 cut(s)	258, 363
AsuC2I	CCSGG	2 cut(s)	114, 146
AsuHPI	GGTGA	3 cut(s)	278, 305, 525
AvaI	CYCGRG	2 cut(s)	6, 33
BanI	GGYRCC	1 cut(s)	360
BauI	CACGAG	2 cut(s)	312, 339
BbsI	GAAGAC	1 cut(s)	112
BccI	CCATC	3 cut(s)	170, 379, 398
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	300
BcnI	CCSGG	2 cut(s)	114, 146
BcoDI	GTCTC	1 cut(s)	507
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	2 cut(s)	424, 493
BfoI	RGCGCY	1 cut(s)	364
BfrI	CTTAAG	1 cut(s)	274
BglII	AGATCT	1 cut(s)	443
BisI	GCNGC	1 cut(s)	385
BlsI	GCNGC	1 cut(s)	386
Bme1390I	CCNGG	3 cut(s)	114, 146, 300
BmeT110I	CYCGRG	2 cut(s)	6, 33
BmgBI	CACGTC	1 cut(s)	482
BmiI	GGNNCC	1 cut(s)	362
BmrFI	CCNGG	3 cut(s)	114, 146, 300
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	139, 148
BmuI	ACTGGG	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	112
BplI	GAGNNNNNCTC	2 cut(s)	430, 462
BpuMI	CCSGG	2 cut(s)	114, 146
BsaHI	GRCGYC	3 cut(s)	361, 382, 457
BsaI	GGTCTC	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	1 cut(s)	482
Bse1I	ACTGG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	3 cut(s)	75, 154, 181
BseLI	CCNNNNNNNGG	1 cut(s)	482
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	4 cut(s)	366, 438, 465, 495
Bsh1236I	CGCG	3 cut(s)	252, 258, 433
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	360
BsiEI	CGRYCG	1 cut(s)	142
BsiHKCI	CYCGRG	2 cut(s)	6, 33
BsiSI	CCGG	2 cut(s)	114, 145
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	1 cut(s)	482
BsmAI	GTCTC	1 cut(s)	507
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	231
Bso31I	GGTCTC	1 cut(s)	507
BsoBI	CYCGRG	2 cut(s)	6, 33
Bsp143I	GATC	3 cut(s)	28, 139, 443
BspACI	CCGC	6 cut(s)	110, 252, 258, 354, 385, 431
BspANI	GGCC	1 cut(s)	231
BspFNI	CGCG	3 cut(s)	252, 258, 433
BspLI	GGNNCC	1 cut(s)	362
BspPI	GGATC	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	360
BspTI	CTTAAG	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	507
BsrI	ACTGG	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	3 cut(s)	28, 139, 443
BssNI	GRCGYC	3 cut(s)	361, 382, 457
BssSI	CACGAG	2 cut(s)	312, 339
Bst2BI	CACGAG	2 cut(s)	312, 339
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	497
BstACI	GRCGYC	3 cut(s)	361, 382, 457
BstAFI	CTTAAG	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	254, 326
BstDEI	CTNAG	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	3 cut(s)	75, 154, 181
BstFNI	CGCG	3 cut(s)	252, 258, 433
BstH2I	RGCGCY	1 cut(s)	364
BstHHI	GCGC	2 cut(s)	258, 363
BstKTI	GATC	3 cut(s)	31, 142, 446
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	3 cut(s)	28, 139, 443
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 167, 199, 360, 527
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	3 cut(s)	112, 144, 298
BstSFI	CTRYAG	2 cut(s)	424, 493
BstUI	CGCG	3 cut(s)	252, 258, 433
BstV2I	GAAGAC	1 cut(s)	112
BstX2I	RGATCY	2 cut(s)	28, 443
BstYI	RGATCY	2 cut(s)	28, 443
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	232
BtrI	CACGTC	1 cut(s)	482
BtsCI	GGATG	3 cut(s)	75, 154, 181
Cac8I	GCNNGC	2 cut(s)	254, 326
CfoI	GCGC	2 cut(s)	258, 363
CseI	GACGC	3 cut(s)	258, 390, 423
CsiI	ACCWGGT	1 cut(s)	298
CviJI	RGCY	7 cut(s)	5, 101, 170, 202, 231, 423, 492
CviKI_1	RGCY	7 cut(s)	5, 101, 170, 202, 231, 423, 492
DdeI	CTNAG	1 cut(s)	216
DinI	GGCGCC	1 cut(s)	362
DpnI	GATC	3 cut(s)	30, 141, 445
DpnII	GATC	3 cut(s)	28, 139, 443
Eco31I	GGTCTC	1 cut(s)	507
Eco88I	CYCGRG	2 cut(s)	6, 33
EcoRII	CCWGG	1 cut(s)	298
EgeI	GGCGCC	1 cut(s)	362
EheI	GGCGCC	1 cut(s)	362
FaiI	YATR	9 cut(s)	15, 94, 120, 285, 402, 411, 426, 511, 540
FaqI	GGGAC	1 cut(s)	378
FauI	CCCGC	1 cut(s)	245
Fnu4HI	GCNGC	1 cut(s)	385
FokI	GGATG	3 cut(s)	82, 161, 188
Fsp4HI	GCNGC	1 cut(s)	385
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	2 cut(s)	257, 362
GluI	GCNGC	1 cut(s)	385
HaeII	RGCGCY	1 cut(s)	364
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	2 cut(s)	114, 145
HgaI	GACGC	3 cut(s)	258, 390, 423
HhaI	GCGC	2 cut(s)	258, 363
Hin1I	GRCGYC	3 cut(s)	361, 382, 457
Hin6I	GCGC	2 cut(s)	256, 361
HinP1I	GCGC	2 cut(s)	256, 361
HpaII	CCGG	2 cut(s)	114, 145
HphI	GGTGA	3 cut(s)	278, 305, 525
Hpy166II	GTNNAC	3 cut(s)	296, 338, 485
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	3 cut(s)	155, 314, 339
Hpy8I	GTNNAC	3 cut(s)	296, 338, 485
Hpy99I	CGWCG	5 cut(s)	384, 459, 462, 483, 528
HpyAV	CCTTC	1 cut(s)	351
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	2 cut(s)	457, 481
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 167, 199, 360, 527
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	2 cut(s)	457, 481
Hsp92I	GRCGYC	3 cut(s)	361, 382, 457
HspAI	GCGC	2 cut(s)	256, 361
KasI	GGCGCC	1 cut(s)	360
Kzo9I	GATC	3 cut(s)	28, 139, 443
LmnI	GCTCC	1 cut(s)	420
LpnPI	CCDG	7 cut(s)	127, 158, 285, 312, 403, 409, 531
LweI	GCATC	2 cut(s)	139, 148
MabI	ACCWGGT	1 cut(s)	298
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	2 cut(s)	457, 481
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	3 cut(s)	30, 141, 445
MboI	GATC	3 cut(s)	28, 139, 443
MboII	GAAGA	4 cut(s)	68, 74, 117, 453
MflI	RGATCY	2 cut(s)	28, 443
MluCI	AATT	5 cut(s)	22, 62, 131, 162, 211
Mly113I	GGCGCC	1 cut(s)	361
MseI	TTAA	1 cut(s)	275
MspCI	CTTAAG	1 cut(s)	274
MspI	CCGG	2 cut(s)	114, 145
MspR9I	CCNGG	3 cut(s)	114, 146, 300
MvaI	CCWGG	1 cut(s)	300
MvnI	CGCG	3 cut(s)	252, 258, 433
MwoI	GCNNNNNNNGC	5 cut(s)	158, 167, 199, 360, 527
NarI	GGCGCC	1 cut(s)	361
NciI	CCSGG	2 cut(s)	114, 146
NdeII	GATC	3 cut(s)	28, 139, 443
NlaIV	GGNNCC	1 cut(s)	362
NmuCI	GTSAC	1 cut(s)	466
PaeR7I	CTCGAG	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	2 cut(s)	484, 520
PkrI	GCNGC	1 cut(s)	386
Ple19I	CGATCG	1 cut(s)	142
PluTI	GGCGCC	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	362
PspXI	VCTCGAGB	1 cut(s)	33
PsuI	RGATCY	2 cut(s)	28, 443
PvuI	CGATCG	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	1 cut(s)	385
Sau3AI	GATC	3 cut(s)	28, 139, 443
ScrFI	CCNGG	3 cut(s)	114, 146, 300
SexAI	ACCWGGT	1 cut(s)	298
SfaNI	GCATC	2 cut(s)	139, 148
SfcI	CTRYAG	2 cut(s)	424, 493
SfoI	GGCGCC	1 cut(s)	362
Sfr274I	CTCGAG	1 cut(s)	33
SlaI	CTCGAG	1 cut(s)	33
SmlI	CTYRAG	2 cut(s)	33, 274
SmoI	CTYRAG	2 cut(s)	33, 274
Sse9I	AATT	5 cut(s)	22, 62, 131, 162, 211
SsiI	CCGC	6 cut(s)	110, 252, 258, 354, 385, 431
SspDI	GGCGCC	1 cut(s)	360
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	3 cut(s)	112, 144, 298
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	2 cut(s)	460, 484
TaqI	TCGA	6 cut(s)	34, 85, 103, 198, 379, 478
TasI	AATT	5 cut(s)	22, 62, 131, 162, 211
TauI	GCSGC	1 cut(s)	387
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TseFI	GTSAC	1 cut(s)	466
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	2 cut(s)	57, 75
Vha464I	CTTAAG	1 cut(s)	274
XapI	RAATTY	3 cut(s)	22, 62, 131
XbaI	TCTAGA	1 cut(s)	154
XhoI	CTCGAG	1 cut(s)	33
XspI	CTAG	1 cut(s)	155
ZraI	GACGTC	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.