Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011799

Physical Location & Seq

Genomic Coordinates Forward (+)

6335987 .. 6338761

Gene Structure 2775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1089900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGACTCGGGTTTATGTTGGGAATTTGGACACTCGAGTGAACGAGAGGGATTTGGAAGATGAATTCCGGATGTTCGGCGTTCTTCGCAATGTATGGGTTGCACGAAGACCGCCAGGATATGCATTTATTGAATTTGATGATCGCAGGGATGCTCTAGACGCGGTTCAAGCTTTGAATGGTAAAAATGGATGGCGTGTGGAGCTTTCTCACAATTCTACGGGTAGTGGAGGCCGTGGTGGTGGTGGACGTGGGCGTGGTGGAGGAGAGGACTTAAAGTGTTATGAGTGTGGTGAACCTGGTCATTTTGCTCGAGAATGTCGCACGCGCGTTGGTTCACGAGGAGTGAGTGGTGGAAGGCGTCGAAGTCCATCCCCTCGACGCCGCAGAAGTCCCAGTTACGATGGCTGTGGGCGCAGGAGTTATAGTCCGCGTAGGAGAAGATCACCTCCACGACGCCGTAGTGTCACACCTCCTCGACGTGGTCGGAGCTACAGCAGGTCTCCTCCACATCGCCCTGCTCGTCGTGCTTCACCTTATGCCAATGGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034097 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312 GO:1990823 GO:1990830

KEGG Pathways

Metabolic & Signaling

ko03040 ko05168 map03040 map05168

Pfam Domains

Protein Families

RRM_1 zf-CCHC

Protein Analysis

184

Amino Acids

20.66

Weight (kDa)

11.48

Isoelectric Point (pI)

111.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	4 - 61	6e-16	RNA recognition motif
zf-CCHC	PF00098	92 - 107	1.3e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23860 AT1G23860 AT1G23860 AT1G23860
fragaria_vesca	FvH4_4g34770
malus_domestica	MD13G1089900.v1.1 MD16G1090200.v1.1
prunus_persica	Prupe.1G255900_v2.0.a1 Prupe.1G255900_v2.0.a1
pyrus_communis	pycom13g07840 pycom16g07730
rosa_chinensis	RchiOBHm_Chr4g0444111
rosa_roxburghii	Rroxscaffold_5G00384700
rosa_rugosa	Rorug04G0349600 Rorug04G0349700
rosa_samantha	Rh4AG410700 Rh4BG422100 Rh4CG436500
rosa_wichuraiana	Rw4G035280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	486
AccII	CGCG	4 cut(s)	161, 325, 327, 430
AccIII	TCCGGA	1 cut(s)	66
AciI	CCGC	4 cut(s)	110, 161, 382, 428
AcsI	RAATTY	3 cut(s)	22, 62, 131
AcyI	GRCGYC	3 cut(s)	358, 379, 454
AfiI	CCNNNNNNNGG	1 cut(s)	479
AgsI	TTSAA	3 cut(s)	131, 167, 175
AjiI	CACGTC	2 cut(s)	248, 479
AjnI	CCWGG	2 cut(s)	112, 295
AleI	CACNNNNGTG	1 cut(s)	35
AluBI	AGCT	3 cut(s)	170, 202, 489
AluI	AGCT	3 cut(s)	170, 202, 489
Alw26I	GTCTC	1 cut(s)	504
Ama87I	CYCGRG	3 cut(s)	6, 33, 309
Aor13HI	TCCGGA	1 cut(s)	66
AoxI	GGCC	1 cut(s)	229
ApoI	RAATTY	3 cut(s)	22, 62, 131
AspLEI	GCGC	2 cut(s)	327, 414
AsuHPI	GGTGA	3 cut(s)	302, 435, 522
AvaI	CYCGRG	3 cut(s)	6, 33, 309
BauI	CACGAG	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	112
BccI	CCATC	3 cut(s)	183, 376, 395
BceAI	ACGGC	2 cut(s)	216, 441
BciT130I	CCWGG	2 cut(s)	114, 297
BcoDI	GTCTC	1 cut(s)	504
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	1 cut(s)	490
BfuAI	ACCTGC	1 cut(s)	486
BisI	GCNGC	1 cut(s)	382
BlsI	GCNGC	1 cut(s)	383
Bme1390I	CCNGG	2 cut(s)	114, 297
BmeT110I	CYCGRG	3 cut(s)	6, 33, 309
BmgBI	CACGTC	2 cut(s)	248, 479
BmrFI	CCNGG	2 cut(s)	114, 297
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	1 cut(s)	139
BmuI	ACTGGG	1 cut(s)	387
BpiI	GAAGAC	1 cut(s)	112
BsaHI	GRCGYC	3 cut(s)	358, 379, 454
BsaI	GGTCTC	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	232
BsaWI	WCCGGW	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	409, 439
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse1I	ACTGG	1 cut(s)	393
Bse3DI	GCAATG	1 cut(s)	94
BseAI	TCCGGA	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	114, 297
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	4 cut(s)	75, 154, 194, 368
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseMI	GCAATG	1 cut(s)	94
BseNI	ACTGG	1 cut(s)	393
BseRI	GAGGAG	4 cut(s)	276, 354, 462, 492
Bsh1236I	CGCG	4 cut(s)	161, 325, 327, 430
BshFI	GGCC	1 cut(s)	231
BsiHKCI	CYCGRG	3 cut(s)	6, 33, 309
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmAI	GTCTC	1 cut(s)	504
BsmFI	GGGAC	1 cut(s)	375
BsnI	GGCC	1 cut(s)	231
Bso31I	GGTCTC	1 cut(s)	504
BsoBI	CYCGRG	3 cut(s)	6, 33, 309
Bsp13I	TCCGGA	1 cut(s)	66
Bsp143I	GATC	2 cut(s)	139, 440
BspACI	CCGC	4 cut(s)	110, 161, 382, 428
BspANI	GGCC	1 cut(s)	231
BspEI	TCCGGA	1 cut(s)	66
BspFNI	CGCG	4 cut(s)	161, 325, 327, 430
BspMI	ACCTGC	1 cut(s)	486
BspTNI	GGTCTC	1 cut(s)	504
BsrDI	GCAATG	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	393
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	2 cut(s)	139, 440
BssNI	GRCGYC	3 cut(s)	358, 379, 454
BssSI	CACGAG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	2 cut(s)	114, 297
BstACI	GRCGYC	3 cut(s)	358, 379, 454
BstC8I	GCNNGC	1 cut(s)	323
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	4 cut(s)	75, 154, 194, 368
BstFNI	CGCG	4 cut(s)	161, 325, 327, 430
BstHHI	GCGC	2 cut(s)	327, 414
BstKTI	GATC	2 cut(s)	142, 443
BstMAI	GTCTC	1 cut(s)	504
BstMBI	GATC	2 cut(s)	139, 440
BstMWI	GCNNNNNNNGC	6 cut(s)	84, 158, 167, 199, 411, 524
BstNI	CCWGG	2 cut(s)	114, 297
BstSCI	CCNGG	2 cut(s)	112, 295
BstSFI	CTRYAG	1 cut(s)	490
BstUI	CGCG	4 cut(s)	161, 325, 327, 430
BstV2I	GAAGAC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	232
BtgZI	GCGATG	1 cut(s)	494
BtrI	CACGTC	2 cut(s)	248, 479
BtsCI	GGATG	4 cut(s)	75, 154, 194, 368
BveI	ACCTGC	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	323
CfoI	GCGC	2 cut(s)	327, 414
CseI	GACGC	4 cut(s)	167, 347, 387, 462
CsiI	ACCWGGT	1 cut(s)	295
CviJI	RGCY	5 cut(s)	170, 202, 231, 405, 489
CviKI_1	RGCY	5 cut(s)	170, 202, 231, 405, 489
DpnI	GATC	2 cut(s)	141, 442
DpnII	GATC	2 cut(s)	139, 440
Eco31I	GGTCTC	1 cut(s)	504
Eco88I	CYCGRG	3 cut(s)	6, 33, 309
EcoRI	GAATTC	1 cut(s)	62
EcoRII	CCWGG	2 cut(s)	112, 295
EcoT22I	ATGCAT	1 cut(s)	124
FaiI	YATR	6 cut(s)	15, 94, 120, 282, 423, 537
FaqI	GGGAC	1 cut(s)	375
Fnu4HI	GCNGC	1 cut(s)	382
FokI	GGATG	4 cut(s)	82, 161, 201, 355
Fsp4HI	GCNGC	1 cut(s)	382
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	2 cut(s)	326, 413
GluI	GCNGC	1 cut(s)	382
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	1 cut(s)	67
HgaI	GACGC	4 cut(s)	167, 347, 387, 462
HhaI	GCGC	2 cut(s)	327, 414
Hin1I	GRCGYC	3 cut(s)	358, 379, 454
Hin6I	GCGC	2 cut(s)	325, 412
HinP1I	GCGC	2 cut(s)	325, 412
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	3 cut(s)	302, 435, 522
Hpy166II	GTNNAC	4 cut(s)	40, 245, 293, 335
Hpy188I	TCNGA	1 cut(s)	486
Hpy188III	TCNNGA	4 cut(s)	67, 155, 311, 336
Hpy8I	GTNNAC	4 cut(s)	40, 245, 293, 335
Hpy99I	CGWCG	5 cut(s)	363, 381, 456, 480, 525
HpyAV	CCTTC	1 cut(s)	348
HpyCH4IV	ACGT	2 cut(s)	247, 478
HpyCH4V	TGCA	2 cut(s)	101, 122
HpyF10VI	GCNNNNNNNGC	6 cut(s)	84, 158, 167, 199, 411, 524
HpySE526I	ACGT	2 cut(s)	247, 478
Hsp92I	GRCGYC	3 cut(s)	358, 379, 454
HspAI	GCGC	2 cut(s)	325, 412
Kpn2I	TCCGGA	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	139, 440
LmnI	GCTCC	2 cut(s)	199, 486
LweI	GCATC	1 cut(s)	139
MabI	ACCWGGT	1 cut(s)	295
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	2 cut(s)	247, 478
MaeIII	GTNAC	2 cut(s)	395, 463
MalI	GATC	2 cut(s)	141, 442
MboI	GATC	2 cut(s)	139, 440
MboII	GAAGA	4 cut(s)	68, 74, 117, 450
MluCI	AATT	4 cut(s)	22, 62, 131, 211
MmeI	TCCRAC	1 cut(s)	464
Mph1103I	ATGCAT	1 cut(s)	124
MroI	TCCGGA	1 cut(s)	66
MseI	TTAA	1 cut(s)	272
MslI	CAYNNNNRTG	1 cut(s)	35
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	2 cut(s)	114, 297
MvaI	CCWGG	2 cut(s)	114, 297
MvnI	CGCG	4 cut(s)	161, 325, 327, 430
MwoI	GCNNNNNNNGC	6 cut(s)	84, 158, 167, 199, 411, 524
NdeII	GATC	2 cut(s)	139, 440
NmuCI	GTSAC	1 cut(s)	463
NsiI	ATGCAT	1 cut(s)	124
OliI	CACNNNNGTG	1 cut(s)	35
PaeR7I	CTCGAG	2 cut(s)	33, 309
PcsI	WCGNNNNNNNCGW	1 cut(s)	517
PflFI	GACNNNGTC	1 cut(s)	480
PkrI	GCNGC	1 cut(s)	383
Psp6I	CCWGG	2 cut(s)	112, 295
PspGI	CCWGG	2 cut(s)	112, 295
PspXI	VCTCGAGB	1 cut(s)	33
PsyI	GACNNNGTC	1 cut(s)	480
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	1 cut(s)	382
Sau3AI	GATC	2 cut(s)	139, 440
ScrFI	CCNGG	2 cut(s)	114, 297
SexAI	ACCWGGT	1 cut(s)	295
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	1 cut(s)	490
Sfr274I	CTCGAG	2 cut(s)	33, 309
SlaI	CTCGAG	2 cut(s)	33, 309
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	33, 309
SmoI	CTYRAG	2 cut(s)	33, 309
Sse9I	AATT	4 cut(s)	22, 62, 131, 211
SsiI	CCGC	4 cut(s)	110, 161, 382, 428
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	112, 295
TaiI	ACGT	2 cut(s)	250, 481
TaqI	TCGA	5 cut(s)	34, 310, 361, 376, 475
TasI	AATT	4 cut(s)	22, 62, 131, 211
TauI	GCSGC	1 cut(s)	384
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TseFI	GTSAC	1 cut(s)	463
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	1 cut(s)	75
Tth111I	GACNNNGTC	1 cut(s)	480
XapI	RAATTY	3 cut(s)	22, 62, 131
XbaI	TCTAGA	1 cut(s)	154
XhoI	CTCGAG	2 cut(s)	33, 309
XspI	CTAG	1 cut(s)	155
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.