Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011659

Physical Location & Seq

Genomic Coordinates Reverse (-)

8571173 .. 8572377

Gene Structure 1205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTTGGAGAAGGAGGCGCACACAAGCCTACTACAAATGACGCGCTTAAATACCTTAGAGCCGTGAAGGCTAAATTTCAAGGTCAACGTGAAAAATATGACGAGTTTCTTCAGATCATGATAGATTATAAAACTCAGAGAATTGATATATCTGGTGTTATAATAAGGATGAAAGAACTCTTGAAAGAACAACAAGGATTACTTTTGGGTTTCAATGCCTTCTTACCAAATGGTTATATGATCACACATCATGAACAACCTTCACAGAAGAAACCTGTCGAGTTAGGGGAAGCAATTAGTTTTATTAACAAGATTAAGACAAGGTTTCAGGGCGATGATCGTGTATACAAATCAGTTTTAGACATTTTAAACATGTACAGAAAGGATAGGAAGCCCATCACCGCGGTCTACCGGGAGGTTGCCATCCTATTTCTAGATCATAACAATTTGCTTGTGGAGTTTACTCACTTTCTGCCTGCTACTCCAGATAAGGGTTATCGGAATTATTCTACGAACAAGGTGACAAAGTTTTCGGTCTACCGGAAAGATAGTAATGCCGATAAAAAAAAAATGAATTTAAAAGGCGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

196

Amino Acids

22.76

Weight (kDa)

9.64

Isoelectric Point (pI)

18.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	31 - 75	1.6e-15	Paired amphipathic helix repeat
PAH	PF02671	115 - 158	9.2e-13	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24200 AT1G70030 AT1G70030 AT1G70030 AT5G35610
fragaria_vesca	FvH4_6g49780 FvH4_6g49780 FvH4_6g49780 FvH4_6g49780
rosa_chinensis	RchiOBHm_Chr2g0169911
rosa_laevigata	RLG00000021910
rosa_multiflora	Rmu_ssc0000389.1_g000010
rosa_roxburghii	Rroxscaffold_2G00081740
rosa_rugosa	Rorug02G0544100
rosa_samantha	Rh2AG616400 Rh2BG628200 Rh2CG597500 Rh2DG639200
rosa_wichuraiana	Rw2G051050

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	129, 161
AccI	GTMKAC	3 cut(s)	345, 408, 537
AccII	CGCG	2 cut(s)	44, 404
AciI	CCGC	2 cut(s)	402, 404
AcsI	RAATTY	2 cut(s)	74, 574
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	491
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	3 cut(s)	80, 184, 214
ApoI	RAATTY	2 cut(s)	74, 574
ArsI	GACNNNNNNTTYG	2 cut(s)	514, 546
AspLEI	GCGC	2 cut(s)	20, 46
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	391, 532
BccI	CCATC	2 cut(s)	404, 431
BceAI	ACGGC	1 cut(s)	47
BclI	TGATCA	1 cut(s)	240
BcnI	CCSGG	1 cut(s)	413
BfaI	CTAG	1 cut(s)	434
BglI	GCCNNNNNGGC	1 cut(s)	68
Bme1390I	CCNGG	1 cut(s)	413
BmrFI	CCNGG	1 cut(s)	413
BpmI	CTGGAG	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	402
BsaWI	WCCGGW	1 cut(s)	540
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	2 cut(s)	174, 423
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMII	CTCAG	1 cut(s)	149
Bsh1236I	CGCG	2 cut(s)	44, 404
BsiSI	CCGG	2 cut(s)	412, 541
BslI	CCNNNNNNNGG	1 cut(s)	491
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	4 cut(s)	114, 240, 337, 436
BspACI	CCGC	2 cut(s)	402, 404
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	2 cut(s)	44, 404
BspHI	TCATGA	2 cut(s)	117, 250
BsrGI	TGTACA	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	4 cut(s)	114, 240, 337, 436
BssNAI	GTATAC	1 cut(s)	346
Bst1107I	GTATAC	1 cut(s)	346
BstAUI	TGTACA	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	2 cut(s)	56, 135
BstDSI	CCRYGG	1 cut(s)	402
BstF5I	GGATG	2 cut(s)	174, 423
BstFNI	CGCG	2 cut(s)	44, 404
BstHHI	GCGC	2 cut(s)	20, 46
BstKTI	GATC	4 cut(s)	117, 243, 340, 439
BstMBI	GATC	4 cut(s)	114, 240, 337, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	411
BstUI	CGCG	2 cut(s)	44, 404
BstZ17I	GTATAC	1 cut(s)	346
BtgI	CCRYGG	1 cut(s)	402
BtgZI	GCGATG	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	174, 423
Cac8I	GCNNGC	1 cut(s)	477
CciI	TCATGA	2 cut(s)	117, 250
CfoI	GCGC	2 cut(s)	20, 46
Cfr42I	CCGCGG	1 cut(s)	405
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	3 cut(s)	118, 251, 373
CviJI	RGCY	4 cut(s)	28, 62, 71, 394
CviKI_1	RGCY	4 cut(s)	28, 62, 71, 394
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	2 cut(s)	56, 135
DpnI	GATC	4 cut(s)	116, 242, 339, 438
DpnII	GATC	4 cut(s)	114, 240, 337, 436
DraI	TTTAAA	2 cut(s)	369, 579
Eco57I	CTGAAG	1 cut(s)	95
FaeI	CATG	3 cut(s)	121, 254, 376
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FatI	CATG	3 cut(s)	117, 250, 372
FbaI	TGATCA	1 cut(s)	240
FblI	GTMKAC	3 cut(s)	345, 408, 537
FokI	GGATG	2 cut(s)	181, 410
FspBI	CTAG	1 cut(s)	434
GlaI	GCGC	2 cut(s)	19, 45
GsuI	CTGGAG	1 cut(s)	468
HapII	CCGG	2 cut(s)	412, 541
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	2 cut(s)	20, 46
Hin1II	CATG	3 cut(s)	121, 254, 376
Hin6I	GCGC	2 cut(s)	18, 44
HinP1I	GCGC	2 cut(s)	18, 44
HincII	GTYRAC	1 cut(s)	86
HindII	GTYRAC	1 cut(s)	86
HpaII	CCGG	2 cut(s)	412, 541
HphI	GGTGA	2 cut(s)	391, 532
Hpy166II	GTNNAC	5 cut(s)	86, 346, 409, 462, 538
Hpy188I	TCNGA	3 cut(s)	114, 138, 501
Hpy188III	TCNNGA	5 cut(s)	118, 181, 251, 434, 485
Hpy8I	GTNNAC	5 cut(s)	86, 346, 409, 462, 538
HpyAV	CCTTC	4 cut(s)	5, 61, 229, 270
HpyCH4IV	ACGT	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	2 cut(s)	56, 135
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	3 cut(s)	121, 254, 376
HspAI	GCGC	2 cut(s)	18, 44
Ksp22I	TGATCA	1 cut(s)	240
KspI	CCGCGG	1 cut(s)	405
Kzo9I	GATC	4 cut(s)	114, 240, 337, 436
LpnPI	CCDG	7 cut(s)	138, 288, 314, 425, 489, 498, 554
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	4 cut(s)	116, 242, 339, 438
MboI	GATC	4 cut(s)	114, 240, 337, 436
MboII	GAAGA	2 cut(s)	101, 280
MluCI	AATT	6 cut(s)	74, 141, 294, 445, 502, 574
MnlI	CCTC	2 cut(s)	8, 409
MseI	TTAA	5 cut(s)	48, 306, 315, 368, 578
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	2 cut(s)	412, 541
MspR9I	CCNGG	1 cut(s)	413
MvnI	CGCG	2 cut(s)	44, 404
MwoI	GCNNNNNNNGC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	413
NdeII	GATC	4 cut(s)	114, 240, 337, 436
NlaIII	CATG	3 cut(s)	121, 254, 376
NmuCI	GTSAC	1 cut(s)	520
NspI	RCATGY	1 cut(s)	376
PagI	TCATGA	2 cut(s)	117, 250
PciI	ACATGT	1 cut(s)	372
PscI	ACATGT	1 cut(s)	372
PsiI	TTATAA	2 cut(s)	129, 161
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SacII	CCGCGG	1 cut(s)	405
SaqAI	TTAA	5 cut(s)	48, 306, 315, 368, 578
Sau3AI	GATC	4 cut(s)	114, 240, 337, 436
ScrFI	CCNGG	1 cut(s)	413
SetI	ASST	8 cut(s)	57, 85, 91, 262, 277, 326, 420, 522
Sfr303I	CCGCGG	1 cut(s)	405
SgrBI	CCGCGG	1 cut(s)	405
Sse9I	AATT	6 cut(s)	74, 141, 294, 445, 502, 574
SsiI	CCGC	2 cut(s)	402, 404
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	411
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	1 cut(s)	279
TaqII	GACCGA	1 cut(s)	523
TasI	AATT	6 cut(s)	74, 141, 294, 445, 502, 574
TatI	WGTACW	1 cut(s)	375
Tru1I	TTAA	5 cut(s)	48, 306, 315, 368, 578
Tru9I	TTAA	5 cut(s)	48, 306, 315, 368, 578
TseFI	GTSAC	1 cut(s)	520
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	3 cut(s)	185, 267, 587
XapI	RAATTY	2 cut(s)	74, 574
XbaI	TCTAGA	1 cut(s)	433
XceI	RCATGY	1 cut(s)	376
XmiI	GTMKAC	3 cut(s)	345, 408, 537
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.