Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011659

Physical Location & Seq

Genomic Coordinates Forward (+)

79243506 .. 79246738

Gene Structure 3233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021910

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCGGGAATACCAGACGCTGTTCCCATAGATTCTGAAATGAAAGCGTCTTCTGGTTCTTCATCTGCTGACTCAAATGGGCCACCCCAAATATCTGGAGGAGTAACTGGAAGACGAGTCGCACCAAAATTGACTGGTGAAGATGCTGTAGCGTATCTCAAAGCAGTGAAGGAAGTGTTTTCCGACCGAAGAGACATATATGAAAGGTTTCTTGAGGTCATGAGAGATTTCAAAACTCATAGAATTTTCACAGCAGAAGTCATTGCGAAAGTAAAGGAACTATTTGAAGGGCATAACAACTTAATTATGGGTTTCAATACTTTCTTGCCAGAGGGTATTGAGATAAGCCTCAATGAAGATGTGCCTCCAAAGAAGCCAGCTGAGTTTCGAGAAGCTATCGACTTTGTAAACAAGATAAAGGAACGTTTCCACGATGACGACAACCGTGTTTATAAGGCATTCCTGGACATACTGAACAAGTACCGAAAGGAGGACAAGCCTATAACTGAGGTTTACCTTGAGGTTGCTGCTTTATTTAGTGACCAGCCAGATTTGCTTGATGAGTTCACTAAATTTCTACCAGATGCAAATCATGAGTACAGCAGGGGTCGTGATCCTAGTCTTGATCATCCTAAACCGCATGATGGAAAAGCAGAAGGAGAAATTGGACCAATGTTGATAGAGAAAGCCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAH

Protein Analysis

232

Amino Acids

26.02

Weight (kDa)

5.1

Isoelectric Point (pI)

31.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	65 - 109	4.4e-16	Paired amphipathic helix repeat
PAH	PF02671	150 - 193	1.3e-15	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24200 AT1G70030 AT1G70030 AT1G70030 AT5G35610
fragaria_vesca	FvH4_6g49780 FvH4_6g49780 FvH4_6g49780 FvH4_6g49780
rosa_chinensis	RchiOBHm_Chr2g0169911
rosa_laevigata	RLG00000021910
rosa_multiflora	Rmu_ssc0000389.1_g000010
rosa_roxburghii	Rroxscaffold_2G00081740
rosa_rugosa	Rorug02G0544100
rosa_samantha	Rh2AG616400 Rh2BG628200 Rh2CG597500 Rh2DG639200
rosa_wichuraiana	Rw2G051050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	453
AciI	CCGC	2 cut(s)	5, 638
AclI	AACGTT	1 cut(s)	424
AclWI	GGATC	1 cut(s)	608
AcsI	RAATTY	2 cut(s)	243, 572
AfaI	GTAC	2 cut(s)	482, 599
AfiI	CCNNNNNNNGG	2 cut(s)	490, 644
AgsI	TTSAA	3 cut(s)	232, 287, 316
AjnI	CCWGG	1 cut(s)	462
AjuI	GAANNNNNNNTTGG	2 cut(s)	648, 680
AluBI	AGCT	2 cut(s)	380, 395
AluI	AGCT	2 cut(s)	380, 395
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	608
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	2 cut(s)	243, 572
Asp700I	GAANNNNTTC	1 cut(s)	207
AspS9I	GGNCC	2 cut(s)	80, 668
AsuHPI	GGTGA	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	668
BbsI	GAAGAC	2 cut(s)	42, 118
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	1 cut(s)	638
BciT130I	CCWGG	1 cut(s)	464
BclI	TGATCA	1 cut(s)	625
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	1 cut(s)	618
BfmI	CTRYAG	1 cut(s)	147
BisI	GCNGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	529
Bme1390I	CCNGG	1 cut(s)	464
Bme18I	GGWCC	1 cut(s)	668
BmgT120I	GGNCC	2 cut(s)	80, 668
BmrFI	CCNGG	1 cut(s)	464
BmsI	GCATC	2 cut(s)	133, 574
BpiI	GAAGAC	2 cut(s)	42, 118
BpmI	CTGGAG	1 cut(s)	117
BpuEI	CTTGAG	2 cut(s)	233, 539
BsaBI	GATNNNNATC	1 cut(s)	588
Bsc4I	CCNNNNNNNGG	2 cut(s)	490, 644
Bse1I	ACTGG	2 cut(s)	112, 139
Bse3DI	GCAATG	1 cut(s)	261
Bse8I	GATNNNNATC	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	464
BseGI	GGATG	1 cut(s)	628
BseJI	GATNNNNATC	1 cut(s)	588
BseLI	CCNNNNNNNGG	2 cut(s)	490, 644
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	2 cut(s)	372, 498
BseNI	ACTGG	2 cut(s)	112, 139
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	514
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	82
BsiEI	CGRYCG	1 cut(s)	187
BslI	CCNNNNNNNGG	2 cut(s)	490, 644
BsmAI	GTCTC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	613, 625
BspACI	CCGC	2 cut(s)	5, 638
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	2 cut(s)	373, 499
BspHI	TCATGA	2 cut(s)	219, 592
BspPI	GGATC	1 cut(s)	608
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	112, 139
BssMI	GATC	2 cut(s)	613, 625
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	2 cut(s)	381, 507
BstF5I	GGATG	1 cut(s)	628
BstKTI	GATC	2 cut(s)	616, 628
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	2 cut(s)	613, 625
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	553
BstNI	CCWGG	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	462
BstSFI	CTRYAG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	514
BstV2I	GAAGAC	2 cut(s)	42, 118
BstXI	CCANNNNNNTGG	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	628
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	378
CaiI	CAGNNNCTG	1 cut(s)	20
CciI	TCATGA	2 cut(s)	219, 592
Cfr13I	GGNCC	2 cut(s)	80, 668
CseI	GACGC	2 cut(s)	26, 36
Csp6I	GTAC	2 cut(s)	481, 598
CviAII	CATG	3 cut(s)	220, 593, 641
CviJI	RGCY	8 cut(s)	82, 348, 376, 380, 395, 499, 547, 689
CviKI_1	RGCY	8 cut(s)	82, 348, 376, 380, 395, 499, 547, 689
CviQI	GTAC	2 cut(s)	481, 598
DdeI	CTNAG	2 cut(s)	381, 507
DpnI	GATC	2 cut(s)	615, 627
DpnII	GATC	2 cut(s)	613, 625
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	462
FaeI	CATG	3 cut(s)	223, 596, 644
FatI	CATG	3 cut(s)	219, 592, 640
FbaI	TGATCA	1 cut(s)	625
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	1 cut(s)	615
Fsp4HI	GCNGC	1 cut(s)	528
FspBI	CTAG	1 cut(s)	618
GluI	GCNGC	1 cut(s)	528
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	82
HgaI	GACGC	2 cut(s)	26, 36
Hin1II	CATG	3 cut(s)	223, 596, 644
HinfI	GANTC	3 cut(s)	32, 71, 117
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	3 cut(s)	409, 514, 567
Hpy188I	TCNGA	2 cut(s)	37, 184
Hpy188III	TCNNGA	7 cut(s)	96, 212, 220, 389, 593, 611, 623
Hpy8I	GTNNAC	3 cut(s)	409, 514, 567
HpyAV	CCTTC	3 cut(s)	163, 281, 650
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	1 cut(s)	587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	553
HpyF3I	CTNAG	2 cut(s)	381, 507
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	3 cut(s)	223, 596, 644
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	2 cut(s)	613, 625
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	2 cut(s)	133, 574
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	2 cut(s)	103, 539
MalI	GATC	2 cut(s)	615, 627
MboI	GATC	2 cut(s)	613, 625
MboII	GAAGA	6 cut(s)	42, 51, 123, 152, 201, 368
MluCI	AATT	5 cut(s)	128, 243, 303, 572, 663
MlyI	GAGTC	2 cut(s)	65, 126
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	8 cut(s)	92, 208, 325, 359, 375, 484, 502, 514
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	464
Mva1269I	GAATGC	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	464
MwoI	GCNNNNNNNGC	1 cut(s)	553
NdeII	GATC	2 cut(s)	613, 625
NlaIII	CATG	3 cut(s)	223, 596, 644
NmuCI	GTSAC	1 cut(s)	539
PagI	TCATGA	2 cut(s)	219, 592
PctI	GAATGC	1 cut(s)	458
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	32
PfoI	TCCNGGA	1 cut(s)	462
PkrI	GCNGC	1 cut(s)	529
PleI	GAGTC	2 cut(s)	65, 125
PpsI	GAGTC	2 cut(s)	65, 125
PsiI	TTATAA	1 cut(s)	453
Psp1406I	AACGTT	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	462
PspGI	CCWGG	1 cut(s)	462
PspPI	GGNCC	2 cut(s)	80, 668
PstNI	CAGNNNCTG	1 cut(s)	20
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	2 cut(s)	482, 599
RsaNI	GTAC	2 cut(s)	481, 598
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	2 cut(s)	613, 625
Sau96I	GGNCC	2 cut(s)	80, 668
SchI	GAGTC	2 cut(s)	65, 126
ScrFI	CCNGG	1 cut(s)	464
SetI	ASST	8 cut(s)	209, 219, 382, 397, 427, 513, 519, 525
SfaNI	GCATC	2 cut(s)	133, 574
SfcI	CTRYAG	1 cut(s)	147
SinI	GGWCC	1 cut(s)	668
SmlI	CTYRAG	2 cut(s)	212, 518
SmoI	CTYRAG	2 cut(s)	212, 518
Sse9I	AATT	5 cut(s)	128, 243, 303, 572, 663
SsiI	CCGC	2 cut(s)	5, 638
SspMI	CTAG	1 cut(s)	618
StyD4I	CCNGG	1 cut(s)	462
TaaI	ACNGT	1 cut(s)	446
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	2 cut(s)	388, 399
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	5 cut(s)	128, 243, 303, 572, 663
TatI	WGTACW	1 cut(s)	597
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	1 cut(s)	527
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	4 cut(s)	51, 56, 216, 369
TspRI	CASTG	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	668
XapI	RAATTY	2 cut(s)	243, 572
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.