Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0011659

Physical Location & Seq

Genomic Coordinates Forward (+)

77339679 .. 77343049

Gene Structure 3371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG597500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTTGTTGGGTTTTGTTTGGGCAGGGATGGCGGGAATACCAGACGATGTTCCCGTAGATTCTGAAATGAAAGCGCCTTCTGGTTCTTCACCTGCTGACTCAAATGGGCCACCCCAAATATCTGGAGGAGTAACTGGAAGACGAGTCGCATCAAAATTGACTGGTGAAGATGCTGTAGCGTATCTCAAAGCAGTGAAGGAAGTGTTTTCCGACCGAATTGACATATATGAAAGGTTTCTTGAGGTCATGAGAGATTTCAAAACTCATAGAATTTTCACAGTAGATGTCATTGCCAAAGTAAAGGAACTATTTGAAGGGCATAACAACTTAATTATGGGTTTCAATACTTTCTTGCCAGAGGGTATTGAGATAAGCCTCGATGAAGATGTGCCTCCAAAGAAGCCAGCTGAGTTTCGAGAAGCTATCGACTTTGTAAACAAGATAAAGGAACGTTTCCAAGATGATGACAACTGTGTTTATAAGGCATTCCTAGATATACTGAACAAGTACCGAAACGAGGACAAGCCTATAACTGAGGTTTACCTTGAGGTTGCTGCTTTATTTAGTGACCAGCCAGATTTGCTTGATGAGTTCACTAAATTTCTACCAGATGCAAATCATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAH

Protein Analysis

208

Amino Acids

23.41

Weight (kDa)

4.63

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	74 - 118	2.2e-15	Paired amphipathic helix repeat
PAH	PF02671	159 - 202	3.2e-15	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24200 AT1G70030 AT1G70030 AT1G70030 AT5G35610
fragaria_vesca	FvH4_6g49780 FvH4_6g49780 FvH4_6g49780 FvH4_6g49780
rosa_chinensis	RchiOBHm_Chr2g0169911
rosa_laevigata	RLG00000021910
rosa_multiflora	Rmu_ssc0000389.1_g000010
rosa_roxburghii	Rroxscaffold_2G00081740
rosa_rugosa	Rorug02G0544100
rosa_samantha	Rh2AG616400 Rh2BG628200 Rh2CG597500 Rh2DG639200
rosa_wichuraiana	Rw2G051050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
AarI	CACCTGC	1 cut(s)	100
Acc36I	ACCTGC	1 cut(s)	100
AciI	CCGC	1 cut(s)	32
AclI	AACGTT	1 cut(s)	451
AcsI	RAATTY	2 cut(s)	270, 599
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	1 cut(s)	517
AgsI	TTSAA	3 cut(s)	259, 314, 343
AluBI	AGCT	2 cut(s)	407, 422
AluI	AGCT	2 cut(s)	407, 422
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	554
ApoI	RAATTY	2 cut(s)	270, 599
Asp700I	GAANNNNTTC	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	81, 176
BbsI	GAAGAC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	491
BfmI	CTRYAG	1 cut(s)	174
BfoI	RGCGCY	1 cut(s)	77
BfuAI	ACCTGC	1 cut(s)	100
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	107
BmsI	GCATC	3 cut(s)	158, 160, 601
BpiI	GAAGAC	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	144
BpuEI	CTTGAG	2 cut(s)	260, 566
BsaBI	GATNNNNATC	1 cut(s)	615
Bsc4I	CCNNNNNNNGG	1 cut(s)	517
Bse1I	ACTGG	2 cut(s)	139, 166
Bse3DI	GCAATG	1 cut(s)	288
Bse8I	GATNNNNATC	1 cut(s)	615
BseGI	GGATG	1 cut(s)	33
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	1 cut(s)	517
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	399, 525
BseNI	ACTGG	2 cut(s)	139, 166
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	541
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	109
BsiEI	CGRYCG	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	517
BsmI	GAATGC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	109
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	2 cut(s)	400, 526
BspHI	TCATGA	1 cut(s)	246
BspMI	ACCTGC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	2 cut(s)	139, 166
Bst4CI	ACNGT	2 cut(s)	280, 473
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	2 cut(s)	408, 534
BstF5I	GGATG	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 580
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	541
BstV2I	GAAGAC	1 cut(s)	145
BstXI	CCANNNNNNTGG	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	33
BtsI	GCAGTG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	198
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	405
CciI	TCATGA	1 cut(s)	246
CfoI	GCGC	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	107
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	2 cut(s)	247, 620
CviJI	RGCY	7 cut(s)	109, 375, 403, 407, 422, 526, 574
CviKI_1	RGCY	7 cut(s)	109, 375, 403, 407, 422, 526, 574
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	2 cut(s)	408, 534
FaeI	CATG	2 cut(s)	250, 623
FatI	CATG	2 cut(s)	246, 619
FauI	CCCGC	1 cut(s)	25
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	1 cut(s)	491
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	555
GsuI	CTGGAG	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	2 cut(s)	250, 623
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	3 cut(s)	59, 98, 144
HphI	GGTGA	2 cut(s)	81, 176
Hpy166II	GTNNAC	3 cut(s)	436, 541, 594
Hpy188I	TCNGA	2 cut(s)	64, 211
Hpy188III	TCNNGA	4 cut(s)	123, 239, 247, 416
Hpy8I	GTNNAC	3 cut(s)	436, 541, 594
HpyAV	CCTTC	3 cut(s)	87, 190, 308
HpyCH4III	ACNGT	2 cut(s)	280, 473
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	1 cut(s)	614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 580
HpyF3I	CTNAG	2 cut(s)	408, 534
HpySE526I	ACGT	1 cut(s)	451
Hsp92II	CATG	2 cut(s)	250, 623
HspAI	GCGC	1 cut(s)	74
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	3 cut(s)	158, 160, 601
MaeI	CTAG	1 cut(s)	491
MaeII	ACGT	1 cut(s)	451
MaeIII	GTNAC	2 cut(s)	130, 566
MboII	GAAGA	4 cut(s)	78, 150, 179, 395
MluCI	AATT	5 cut(s)	155, 216, 270, 330, 599
MlyI	GAGTC	2 cut(s)	92, 153
MmeI	TCCRAC	1 cut(s)	234
MnlI	CCTC	8 cut(s)	119, 235, 352, 386, 402, 511, 529, 541
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	407
Mva1269I	GAATGC	1 cut(s)	485
MwoI	GCNNNNNNNGC	2 cut(s)	29, 580
NlaIII	CATG	2 cut(s)	250, 623
NmuCI	GTSAC	1 cut(s)	566
PagI	TCATGA	1 cut(s)	246
PaqCI	CACCTGC	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PctI	GAATGC	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	556
PleI	GAGTC	2 cut(s)	92, 152
PpsI	GAGTC	2 cut(s)	92, 152
PsiI	TTATAA	1 cut(s)	480
Psp1406I	AACGTT	1 cut(s)	451
PspPI	GGNCC	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	1 cut(s)	555
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	2 cut(s)	92, 153
SetI	ASST	9 cut(s)	94, 236, 246, 409, 424, 454, 540, 546, 552
SfaNI	GCATC	3 cut(s)	158, 160, 601
SfcI	CTRYAG	1 cut(s)	174
SmlI	CTYRAG	2 cut(s)	239, 545
SmoI	CTYRAG	2 cut(s)	239, 545
Sse9I	AATT	5 cut(s)	155, 216, 270, 330, 599
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	491
TaaI	ACNGT	2 cut(s)	280, 473
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	3 cut(s)	378, 415, 426
TaqII	GACCGA	1 cut(s)	228
TasI	AATT	5 cut(s)	155, 216, 270, 330, 599
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	1 cut(s)	554
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	3 cut(s)	83, 243, 396
TspRI	CASTG	1 cut(s)	198
XapI	RAATTY	2 cut(s)	270, 599
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.