AT1G70030

Paired amphipathic helix protein Sin3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011659
Physical Location & Seq
Forward (+)
26378641 .. 26380379
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70030.3

Sequence Viewer

Length: 483 bp
ATGGTTGCAAATAAGAAGCTAACTACAACCGATGCACTTGATTTCCTCCATCTTGTAAAAACTAAATATCAAGATAATCGTGAAATATATGATAGTTTTCTTACGATCATGAAGGATTTCAGAGGTCAGAGAGCTAAAACATGTGACGTCATATCAAAAGTGAAAGAACTCTTCAAAGGGCAACCAGAGCTTCTCTTAGGTTTCAACACATTCTTGCCAACGGGGTTTGAAATAACACTCAGTGATGACGAACTTACGTCAAATTCGAAGTTTGCTCACTTTGACGAAGCATATGAATTTGTCAACAAGGTCAAGACAAGATTTCAGAACAATGATGTATTCAACTCATTTTTAGAGGTTTTGAAAACGCATAAAAAGGAAAACAAGAGCGTTGCTGAGCTCTACCAGGAGGTGGCTATCCTTTTTCAAGGCCATCGAGACTTGCTTGAGGAATTTCATCTCTTTCTTCCACATTATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202
Pfam Domains
Protein Families
PAH Sin3_corepress Sin3a_C

Protein Analysis

160

Amino Acids

18.72

Weight (kDa)

6.07

Isoelectric Point (pI)

27.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAH PF02671 39 - 83 1.8e-16 Paired amphipathic helix repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011659)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24200 AT1G70030 AT1G70030 AT1G70030 AT5G35610
fragaria_vesca FvH4_6g49780 FvH4_6g49780 FvH4_6g49780 FvH4_6g49780
rosa_chinensis RchiOBHm_Chr2g0169911
rosa_laevigata RLG00000021910
rosa_multiflora Rmu_ssc0000389.1_g000010
rosa_roxburghii Rroxscaffold_2G00081740
rosa_rugosa Rorug02G0544100
rosa_samantha Rh2AG616400 Rh2BG628200 Rh2CG597500 Rh2DG639200
rosa_wichuraiana Rw2G051050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
AccB7I CCANNNNNTGG 2 cut(s) 412, 476
AcsI RAATTY 3 cut(s) 262, 296, 452
AcyI GRCGYC 1 cut(s) 147
AdeI CACNNNGTG 1 cut(s) 242
AfiI CCNNNNNNNGG 2 cut(s) 412, 476
AflIII ACRYGT 1 cut(s) 140
AgsI TTSAA 6 cut(s) 175, 205, 230, 343, 364, 428
AjnI CCWGG 1 cut(s) 405
AluBI AGCT 4 cut(s) 19, 134, 190, 400
AluI AGCT 4 cut(s) 19, 134, 190, 400
Alw21I GWGCWC 1 cut(s) 402
Alw26I GTCTC 1 cut(s) 432
AoxI GGCC 1 cut(s) 430
ApoI RAATTY 3 cut(s) 262, 296, 452
Asp700I GAANNNNTTC 1 cut(s) 116
AsuII TTCGAA 1 cut(s) 266
BanII GRGCYC 1 cut(s) 402
Bbv12I GWGCWC 1 cut(s) 402
BccI CCATC 2 cut(s) 57, 441
BciT130I CCWGG 1 cut(s) 407
BcoDI GTCTC 1 cut(s) 432
BlpI GCTNAGC 1 cut(s) 396
Bme1390I CCNGG 1 cut(s) 407
BmrFI CCNGG 1 cut(s) 407
BmsI GCATC 1 cut(s) 22
Bpu1102I GCTNAGC 1 cut(s) 396
Bpu14I TTCGAA 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 467
BsaHI GRCGYC 1 cut(s) 147
Bsc4I CCNNNNNNNGG 2 cut(s) 412, 476
BseBI CCWGG 1 cut(s) 407
BseLI CCNNNNNNNGG 2 cut(s) 412, 476
BseMII CTCAG 2 cut(s) 253, 387
BshFI GGCC 1 cut(s) 432
BsiHKAI GWGCWC 1 cut(s) 402
BslI CCNNNNNNNGG 2 cut(s) 412, 476
BsmAI GTCTC 1 cut(s) 432
BsnI GGCC 1 cut(s) 432
Bsp119I TTCGAA 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 1 cut(s) 105
Bsp1720I GCTNAGC 1 cut(s) 396
BspANI GGCC 1 cut(s) 432
BspCNI CTCAG 2 cut(s) 252, 388
BspHI TCATGA 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 266
BssMI GATC 1 cut(s) 105
BssNI GRCGYC 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 407
Bst6I CTCTTC 1 cut(s) 176
BstACI GRCGYC 1 cut(s) 147
BstBI TTCGAA 1 cut(s) 266
BstDEI CTNAG 3 cut(s) 196, 239, 396
BstKTI GATC 1 cut(s) 108
BstMAI GTCTC 1 cut(s) 432
BstMBI GATC 1 cut(s) 105
BstMWI GCNNNNNNNGC 1 cut(s) 187
BstNI CCWGG 1 cut(s) 407
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 405
BsuRI GGCC 1 cut(s) 432
BtsIMutI CAGTG 1 cut(s) 247
CciI TCATGA 1 cut(s) 108
CviAII CATG 2 cut(s) 109, 141
CviJI RGCY 6 cut(s) 19, 134, 190, 400, 416, 432
CviKI_1 RGCY 6 cut(s) 19, 134, 190, 400, 416, 432
DdeI CTNAG 3 cut(s) 196, 239, 396
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
DraIII CACNNNGTG 1 cut(s) 242
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 402
Eco53kI GAGCTC 1 cut(s) 400
EcoICRI GAGCTC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 405
EcoT38I GRGCYC 1 cut(s) 402
FaeI CATG 2 cut(s) 112, 144
FaiI YATR 9 cut(s) 88, 90, 110, 142, 152, 292, 294, 372, 477
FatI CATG 2 cut(s) 108, 140
FauNDI CATATG 1 cut(s) 292
FriOI GRGCYC 1 cut(s) 402
HaeIII GGCC 1 cut(s) 432
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 2 cut(s) 112, 144
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 3 cut(s) 122, 129, 327
Hpy188III TCNNGA 5 cut(s) 71, 80, 109, 313, 437
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 106
HpyCH4IV ACGT 2 cut(s) 147, 257
HpyCH4V TGCA 2 cut(s) 8, 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 187
HpyF3I CTNAG 3 cut(s) 196, 239, 396
HpySE526I ACGT 2 cut(s) 147, 257
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 2 cut(s) 112, 144
Kzo9I GATC 1 cut(s) 105
LpnPI CCDG 3 cut(s) 198, 392, 419
LweI GCATC 1 cut(s) 22
MaeII ACGT 2 cut(s) 147, 257
MaeIII GTNAC 1 cut(s) 143
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 2 cut(s) 163, 458
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 3 cut(s) 262, 296, 452
MnlI CCTC 5 cut(s) 56, 116, 349, 403, 442
MroXI GAANNNNTTC 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 407
MvaI CCWGG 1 cut(s) 407
MwoI GCNNNNNNNGC 1 cut(s) 187
NdeI CATATG 1 cut(s) 292
NdeII GATC 1 cut(s) 105
NlaIII CATG 2 cut(s) 112, 144
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 1 cut(s) 144
NspV TTCGAA 1 cut(s) 266
PagI TCATGA 1 cut(s) 108
PciI ACATGT 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 116
PflMI CCANNNNNTGG 2 cut(s) 412, 476
PscI ACATGT 1 cut(s) 140
Psp124BI GAGCTC 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 405
PspGI CCWGG 1 cut(s) 405
SacI GAGCTC 1 cut(s) 402
Sau3AI GATC 1 cut(s) 105
ScrFI CCNGG 1 cut(s) 407
SduI GDGCHC 1 cut(s) 402
SfaNI GCATC 1 cut(s) 22
SfuI TTCGAA 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 3 cut(s) 262, 296, 452
SstI GAGCTC 1 cut(s) 402
StyD4I CCNGG 1 cut(s) 405
TaiI ACGT 2 cut(s) 150, 260
TaqI TCGA 2 cut(s) 266, 436
TasI AATT 3 cut(s) 262, 296, 452
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 3 cut(s) 125, 309, 446
TspRI CASTG 1 cut(s) 247
Van91I CCANNNNNTGG 2 cut(s) 412, 476
XapI RAATTY 3 cut(s) 262, 296, 452
XceI RCATGY 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 116
ZraI GACGTC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.