Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011659

Physical Location & Seq

Genomic Coordinates Forward (+)

37224100 .. 37227474

Gene Structure 3375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g49780.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCGGGAATACCAGACCATGTTCCCGTTGATTCTGAAACCAAAGCCCCCTCTTCTTCTTCTTCAACTCCTCCCTTAAATGGGCCTCCCCAAATATCTGGAGGAGTAACTGGAAGACGTGGCGCACCAAAAGTGACCAGTAAAGATGCTGTAGCATATCTCAAAGCAGTGAAGGAAGCTTTTTCTGACCAAAGAGTCATATATGAAAGGTTTCTTGAGATCATGAAAGATTTCAAAACTCATAGACTTTGCAGAGTAGATGTCATTGCAAAAGTAAAAGAACTATTTGAAGGGCATAACAACTTAATTATGGGTTTCAATACTTTCTTGCCAGAGGGTATTGAGATAACCCTTGATGAAGATGCGCCTCCAAAGAAGCCAGCTGAGTTTGAAGAAGCTATCAATTTTGTAAACAAGATAAAGGAACGTTTCCAAGATGACGACAACCATGTTTATAAGGCATTCCTAGACATACTGAACAAGTATCGGAAGGAGGACAAACCTATTTCTGAAGTTTACCTTGAAGTTGCTGTTTTGTTTGATGACCAGCCAGATCTGCTTGATGAGTTCACTAAGTTTCTACCAGATTCAAATCCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAH

Protein Analysis

201

Amino Acids

22.55

Weight (kDa)

5.02

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	44 - 87	4.8e-16	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24200 AT1G70030 AT1G70030 AT1G70030 AT5G35610
fragaria_vesca	FvH4_6g49780 FvH4_6g49780 FvH4_6g49780 FvH4_6g49780
rosa_chinensis	RchiOBHm_Chr2g0169911
rosa_laevigata	RLG00000021910
rosa_multiflora	Rmu_ssc0000389.1_g000010
rosa_roxburghii	Rroxscaffold_2G00081740
rosa_rugosa	Rorug02G0544100
rosa_samantha	Rh2AG616400 Rh2BG628200 Rh2CG597500 Rh2DG639200
rosa_wichuraiana	Rw2G051050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
AasI	GACNNNNNNGTC	1 cut(s)	194
AciI	CCGC	1 cut(s)	5
AclI	AACGTT	1 cut(s)	427
AcuI	CTGAAG	1 cut(s)	531
AfiI	CCNNNNNNNGG	2 cut(s)	80, 81
AgsI	TTSAA	7 cut(s)	66, 235, 290, 319, 392, 524, 591
AjiI	CACGTC	1 cut(s)	119
AluBI	AGCT	3 cut(s)	179, 383, 398
AluI	AGCT	3 cut(s)	179, 383, 398
AoxI	GGCC	1 cut(s)	83
Asp700I	GAANNNNTTC	2 cut(s)	210, 230
AspLEI	GCGC	2 cut(s)	125, 367
AspS9I	GGNCC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	121
BfaI	CTAG	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	150
BglII	AGATCT	1 cut(s)	553
BmgBI	CACGTC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	83
BmsI	GCATC	2 cut(s)	136, 352
BpiI	GAAGAC	1 cut(s)	121
BpmI	CTGGAG	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	591
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 81
Bse1I	ACTGG	2 cut(s)	115, 138
Bse3DI	GCAATG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	591
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	2 cut(s)	80, 81
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	2 cut(s)	115, 138
BseRI	GAGGAG	2 cut(s)	60, 117
BshFI	GGCC	1 cut(s)	85
BslI	CCNNNNNNNGG	2 cut(s)	80, 81
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	219, 553
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	2 cut(s)	115, 138
BssMI	GATC	2 cut(s)	219, 553
Bst6I	CTCTTC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	2 cut(s)	384, 573
BstHHI	GCGC	2 cut(s)	125, 367
BstKTI	GATC	2 cut(s)	222, 556
BstMBI	GATC	2 cut(s)	219, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	556
BstSFI	CTRYAG	1 cut(s)	150
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	553
BstXI	CCANNNNNNTGG	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	553
BsuRI	GGCC	1 cut(s)	85
BtrI	CACGTC	1 cut(s)	119
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	381
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	2 cut(s)	125, 367
Cfr13I	GGNCC	1 cut(s)	83
CviAII	CATG	3 cut(s)	20, 223, 449
CviJI	RGCY	7 cut(s)	47, 85, 179, 379, 383, 398, 550
CviKI_1	RGCY	7 cut(s)	47, 85, 179, 379, 383, 398, 550
DdeI	CTNAG	2 cut(s)	384, 573
DpnI	GATC	2 cut(s)	221, 555
DpnII	GATC	2 cut(s)	219, 553
DrdI	GACNNNNNNGTC	1 cut(s)	194
DseDI	GACNNNNNNGTC	1 cut(s)	194
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco57I	CTGAAG	1 cut(s)	531
FaeI	CATG	3 cut(s)	23, 226, 452
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
FatI	CATG	3 cut(s)	19, 222, 448
FspBI	CTAG	1 cut(s)	467
GlaI	GCGC	2 cut(s)	124, 366
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	85
HhaI	GCGC	2 cut(s)	125, 367
Hin1II	CATG	3 cut(s)	23, 226, 452
Hin6I	GCGC	2 cut(s)	123, 365
HinP1I	GCGC	2 cut(s)	123, 365
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	3 cut(s)	32, 195, 587
Hpy166II	GTNNAC	3 cut(s)	412, 517, 570
Hpy188I	TCNGA	4 cut(s)	37, 187, 489, 511
Hpy188III	TCNNGA	3 cut(s)	99, 215, 223
Hpy8I	GTNNAC	3 cut(s)	412, 517, 570
HpyAV	CCTTC	3 cut(s)	166, 284, 484
HpyCH4IV	ACGT	2 cut(s)	118, 427
HpyCH4V	TGCA	2 cut(s)	252, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	556
HpyF3I	CTNAG	2 cut(s)	384, 573
HpySE526I	ACGT	2 cut(s)	118, 427
Hsp92II	CATG	3 cut(s)	23, 226, 452
HspAI	GCGC	2 cut(s)	123, 365
Kzo9I	GATC	2 cut(s)	219, 553
LpnPI	CCDG	9 cut(s)	27, 84, 96, 151, 345, 393, 560, 564, 597
LweI	GCATC	2 cut(s)	136, 352
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	2 cut(s)	118, 427
MaeIII	GTNAC	2 cut(s)	106, 133
MalI	GATC	2 cut(s)	221, 555
MboI	GATC	2 cut(s)	219, 553
MboII	GAAGA	7 cut(s)	45, 48, 51, 54, 126, 371, 404
MflI	RGATCY	1 cut(s)	553
MluCI	AATT	2 cut(s)	306, 403
MlyI	GAGTC	1 cut(s)	204
MnlI	CCTC	7 cut(s)	61, 81, 95, 96, 328, 378, 487
MroXI	GAANNNNTTC	2 cut(s)	210, 230
MseI	TTAA	3 cut(s)	77, 305, 601
MspA1I	CMGCKG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	461
MwoI	GCNNNNNNNGC	1 cut(s)	556
NdeII	GATC	2 cut(s)	219, 553
NlaIII	CATG	3 cut(s)	23, 226, 452
NmuCI	GTSAC	1 cut(s)	133
PagI	TCATGA	1 cut(s)	222
PctI	GAATGC	1 cut(s)	461
PdmI	GAANNNNTTC	2 cut(s)	210, 230
PfeI	GAWTC	2 cut(s)	32, 587
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	456
Psp1406I	AACGTT	1 cut(s)	427
PspPI	GGNCC	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	553
PvuII	CAGCTG	1 cut(s)	383
SaqAI	TTAA	3 cut(s)	77, 305, 601
Sau3AI	GATC	2 cut(s)	219, 553
Sau96I	GGNCC	1 cut(s)	83
SchI	GAGTC	1 cut(s)	204
SetI	ASST	8 cut(s)	121, 181, 212, 385, 400, 430, 505, 522
SfaNI	GCATC	2 cut(s)	136, 352
SfcI	CTRYAG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	2 cut(s)	306, 403
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	467
TaiI	ACGT	2 cut(s)	121, 430
TasI	AATT	2 cut(s)	306, 403
TfiI	GAWTC	2 cut(s)	32, 587
Tru1I	TTAA	3 cut(s)	77, 305, 601
Tru9I	TTAA	3 cut(s)	77, 305, 601
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	3 cut(s)	219, 239, 372
TspRI	CASTG	1 cut(s)	174
XmnI	GAANNNNTTC	2 cut(s)	210, 230
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.