Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011659

Physical Location & Seq

Genomic Coordinates Reverse (-)

13819506 .. 13820293

Gene Structure 788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G35610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGCGCATCGAAGATAACTAAAAGTAACCCACGTAAGTACCTCAAGATTGTGAAGAACAAACTTCAAAACAAACGTGAAATTTATGTTAGGTTTCTTCAGGTCATGACTGCTTACTCAGCTCAGAGAATTGATCCAAGTGGTGTAAAATCAGTGGTTAAAGAACTCTTCAAAGAGGACCAAGAGCCGATATCAGGTTTCAATACATTCTTGCCAAAGGGTTTTGAAATAAAACCCGAGTGTGACCAAAATGGTTTCAAAATAAAACTCGAGTGTGAACAAACTCCACCAAAGAAGTATGTTGATATTGAGTATTCAGAAGCTCTTGATTTTGTCAGAAAAGTTAAGGATGATGACCGTATATACAAATCATTTGTAACTATTATGGACATGTACAAAAAGAAAAACAAGAGCCTTGACGAAGTCTGTCGTGAGGTATATATGTGTGTATACCTACTACAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

155

Amino Acids

18.34

Weight (kDa)

9.2

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	27 - 71	2.1e-11	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24200 AT1G70030 AT1G70030 AT1G70030 AT5G35610
fragaria_vesca	FvH4_6g49780 FvH4_6g49780 FvH4_6g49780 FvH4_6g49780
rosa_chinensis	RchiOBHm_Chr2g0169911
rosa_laevigata	RLG00000021910
rosa_multiflora	Rmu_ssc0000389.1_g000010
rosa_roxburghii	Rroxscaffold_2G00081740
rosa_rugosa	Rorug02G0544100
rosa_samantha	Rh2AG616400 Rh2BG628200 Rh2CG597500 Rh2DG639200
rosa_wichuraiana	Rw2G051050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	450
AclWI	GGATC	1 cut(s)	128
AcsI	RAATTY	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	2 cut(s)	41, 395
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	5 cut(s)	68, 172, 202, 227, 259
AluBI	AGCT	2 cut(s)	122, 323
AluI	AGCT	2 cut(s)	122, 323
AlwI	GGATC	1 cut(s)	128
Ama87I	CYCGRG	2 cut(s)	236, 269
ApoI	RAATTY	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	178
AvaI	CYCGRG	2 cut(s)	236, 269
AvaII	GGWCC	1 cut(s)	178
BaeI	ACNNNNGTAYC	2 cut(s)	23, 56
Bme18I	GGWCC	1 cut(s)	178
BmeT110I	CYCGRG	2 cut(s)	236, 269
BmgT120I	GGNCC	1 cut(s)	178
BmsI	GCATC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	29
BsaAI	YACGTR	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	2 cut(s)	132, 137
BsiHKCI	CYCGRG	2 cut(s)	236, 269
BslI	CCNNNNNNNGG	1 cut(s)	194
BsoBI	CYCGRG	2 cut(s)	236, 269
Bsp1407I	TGTACA	1 cut(s)	393
Bsp143I	GATC	1 cut(s)	133
BspCNI	CTCAG	2 cut(s)	131, 136
BspHI	TCATGA	1 cut(s)	105
BspPI	GGATC	1 cut(s)	128
BsrGI	TGTACA	1 cut(s)	393
BssMI	GATC	1 cut(s)	133
BssNAI	GTATAC	1 cut(s)	451
Bst1107I	GTATAC	1 cut(s)	451
Bst4CI	ACNGT	1 cut(s)	359
Bst6I	CTCTTC	1 cut(s)	173
BstAUI	TGTACA	1 cut(s)	393
BstBAI	YACGTR	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	118, 123
BstF5I	GGATG	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	394
BstZ17I	GTATAC	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	355
BtsIMutI	CAGTG	1 cut(s)	159
CciI	TCATGA	1 cut(s)	105
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	40, 394
CviAII	CATG	2 cut(s)	106, 391
CviJI	RGCY	4 cut(s)	122, 187, 323, 414
CviKI_1	RGCY	4 cut(s)	122, 187, 323, 414
CviQI	GTAC	2 cut(s)	40, 394
DdeI	CTNAG	2 cut(s)	118, 123
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	83
Eco88I	CYCGRG	2 cut(s)	236, 269
EcoRV	GATATC	1 cut(s)	192
FaeI	CATG	2 cut(s)	109, 394
FatI	CATG	2 cut(s)	105, 390
FblI	GTMKAC	1 cut(s)	450
FokI	GGATG	1 cut(s)	362
GlaI	GCGC	1 cut(s)	7
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	109, 394
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	278, 451
Hpy188I	TCNGA	3 cut(s)	126, 319, 338
Hpy188III	TCNNGA	4 cut(s)	46, 106, 326, 431
Hpy8I	GTNNAC	2 cut(s)	278, 451
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4IV	ACGT	2 cut(s)	34, 76
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	2 cut(s)	118, 123
HpySE526I	ACGT	2 cut(s)	34, 76
Hsp92II	CATG	2 cut(s)	109, 394
HspAI	GCGC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	133
LpnPI	CCDG	2 cut(s)	86, 180
LweI	GCATC	1 cut(s)	17
MaeII	ACGT	2 cut(s)	34, 76
MaeIII	GTNAC	3 cut(s)	26, 242, 376
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	4 cut(s)	25, 67, 89, 160
MluCI	AATT	2 cut(s)	81, 129
MnlI	CCTC	3 cut(s)	53, 169, 427
MseI	TTAA	3 cut(s)	159, 345, 466
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	109, 394
NmuCI	GTSAC	1 cut(s)	242
NspI	RCATGY	1 cut(s)	394
PaeR7I	CTCGAG	1 cut(s)	269
PagI	TCATGA	1 cut(s)	105
PciI	ACATGT	1 cut(s)	390
PflFI	GACNNNGTC	1 cut(s)	422
Ppu21I	YACGTR	1 cut(s)	35
PscI	ACATGT	1 cut(s)	390
PspPI	GGNCC	1 cut(s)	178
PspXI	VCTCGAGB	1 cut(s)	269
PsyI	GACNNNGTC	1 cut(s)	422
RsaI	GTAC	2 cut(s)	41, 395
RsaNI	GTAC	2 cut(s)	40, 394
SaqAI	TTAA	3 cut(s)	159, 345, 466
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	178
SfaNI	GCATC	1 cut(s)	17
Sfr274I	CTCGAG	1 cut(s)	269
SinI	GGWCC	1 cut(s)	178
SlaI	CTCGAG	1 cut(s)	269
SmlI	CTYRAG	2 cut(s)	44, 269
SmoI	CTYRAG	2 cut(s)	44, 269
Sse9I	AATT	2 cut(s)	81, 129
SspI	AATATT	1 cut(s)	464
TaaI	ACNGT	1 cut(s)	359
TaiI	ACGT	2 cut(s)	37, 79
TaqI	TCGA	2 cut(s)	11, 270
TasI	AATT	2 cut(s)	81, 129
TatI	WGTACW	1 cut(s)	393
Tru1I	TTAA	3 cut(s)	159, 345, 466
Tru9I	TTAA	3 cut(s)	159, 345, 466
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	242
TspRI	CASTG	1 cut(s)	159
Tth111I	GACNNNGTC	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	1 cut(s)	81
XceI	RCATGY	1 cut(s)	394
XhoI	CTCGAG	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.