AT1G24470

Very-long-chain 3-oxoacyl-CoA reductase-like protein At1g24470

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017543
Physical Location & Seq
Forward (+)
8673914 .. 8676408
2495 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G24470.1

Sequence Viewer

Length: 939 bp
ATGCAGGGAGCATGCATCTCCGAGAGTCAGCCATGGTATCTCCATTTCGTATGCTTCATAGGCTTTCTCTTTCTCCTTAGAGTACTATTCATTCCTCTCCTAAAATGGTTCACCACAAGATTCCTCCTCACACCCAAGCGGCTCAAGCGGTACGGCTCATGGGCTATGGTCACTGGAGCCACCGAGGGGATCGGACGCGCCTTTGCTCACGAGCTGGCCAAACACGGCCTTAACCTCATCCTAGTCAGCAGAAACCTTTCGAAGCTCGAATCTGTCTCTGATGATTTCCAACAAGAGTTTCCCCACATCAAGATCAAGATCATTCCATTTGACTTCTCCTCTGAAGGAGGATACGGAGCAATCGAGGAAGGGATAAAAGGCCTTGAAGTTGGGATTTTGATAAACAACGTTGGTATTACTTATCCACGCGCCATGTTCTTCCACGAGGTTGACCAACTTACATGGACCAAAATCCTGAGGGTTAATCTTGAAGCCACCACTTGGGTCACACGATCACTCATCGGACCAATGCTTCACCGCCGCCGTGGAGCCATCGTCAATATTAGCTCCGGCGCTGCCGTTGTTGTCCCTTCTCATCCCCTCTACGCCATCTACGCTGCCACCAAAGCTTATGTGGATGCACTATCAAGATCTCTACATGTGGAATATAAGCAGTTTGGTATTGATGTCCAGTGCCAGGTTCCCTTATACGTGTCAACAAGGATGGTGTCAGAAGTGGCAGCTATAGACAAACCTAGCTTATTTGTACCGTCGCCTGAAGTCTACGCAAAAGCGGCGGTGGCGCAGATCGGAATTGGATCACGTTGCTCGCCGTTTTGGGCTCATTCTCTTCAGTGGTTTCTTGTTGGACTTGTACCGGATAACCTTGTTGATACTTGGCGTCTCTCTATCGGACTTCGCAGAAGAAGTTTATCTTAA

Protein Analysis

312

Amino Acids

35.01

Weight (kDa)

9.44

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 54 - 246 3.1e-39 short chain dehydrogenase
KR PF08659 55 - 220 2.3e-07 KR domain
adh_short_C2 PF13561 59 - 249 5.6e-23 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017543)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24470
fragaria_vesca FvH4_4g24990
malus_domestica MD16G1107400.v1.1
prunus_persica Prupe.1G239000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0432051
rosa_laevigata RLG00000006866
rosa_multiflora Rmu_sc0004965.1_g000024
rosa_roxburghii Rroxscaffold_5G00373600
rosa_samantha Rh4BG319000 Rh4CG334500 Rh4DG314200
rosa_wichuraiana Rw4G027110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 501
AccI GTMKAC 1 cut(s) 783
AccII CGCG 2 cut(s) 198, 429
AciI CCGC 6 cut(s) 139, 148, 538, 541, 794, 797
AclI AACGTT 1 cut(s) 408
AclWI GGATC 2 cut(s) 197, 826
AcoI YGGCCR 1 cut(s) 216
AcuI CTGAAG 3 cut(s) 363, 798, 836
AcyI GRCGYC 1 cut(s) 901
AfaI GTAC 4 cut(s) 84, 152, 768, 876
AfiI CCNNNNNNNGG 3 cut(s) 186, 501, 697
AflIII ACRYGT 2 cut(s) 658, 711
AgsI TTSAA 2 cut(s) 386, 491
AjnI CCWGG 1 cut(s) 696
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
AluBI AGCT 6 cut(s) 214, 265, 567, 629, 743, 759
AluI AGCT 6 cut(s) 214, 265, 567, 629, 743, 759
Alw26I GTCTC 2 cut(s) 280, 908
AlwI GGATC 2 cut(s) 197, 826
AoxI GGCC 3 cut(s) 216, 226, 379
ApeKI GCWGC 3 cut(s) 575, 617, 740
Asp700I GAANNNNTTC 1 cut(s) 256
AspLEI GCGC 4 cut(s) 200, 431, 575, 805
AspS9I GGNCC 2 cut(s) 465, 524
AsuHPI GGTGA 2 cut(s) 103, 527
AsuII TTCGAA 1 cut(s) 260
AvaII GGWCC 2 cut(s) 465, 524
AxyI CCTNAGG 1 cut(s) 476
BalI TGGCCA 1 cut(s) 218
BanII GRGCYC 1 cut(s) 844
BauI CACGAG 2 cut(s) 209, 443
BbvI GCAGC 3 cut(s) 562, 604, 752
BccI CCATC 3 cut(s) 560, 617, 718
BceAI ACGGC 5 cut(s) 169, 241, 528, 563, 817
BciT130I CCWGG 1 cut(s) 698
BciVI GTATCC 1 cut(s) 344
BcoDI GTCTC 2 cut(s) 280, 908
BfaI CTAG 2 cut(s) 242, 756
BfmI CTRYAG 1 cut(s) 744
BfoI RGCGCY 1 cut(s) 576
BfuI GTATCC 1 cut(s) 344
BglII AGATCT 1 cut(s) 650
BisI GCNGC 6 cut(s) 140, 541, 576, 618, 741, 795
BlsI GCNGC 6 cut(s) 141, 542, 577, 619, 742, 796
BmcAI AGTACT 1 cut(s) 84
Bme1390I CCNGG 1 cut(s) 698
Bme18I GGWCC 2 cut(s) 465, 524
BmgT120I GGNCC 2 cut(s) 465, 524
BmiI GGNNCC 3 cut(s) 178, 550, 702
BmrFI CCNGG 1 cut(s) 698
BmsI GCATC 2 cut(s) 24, 628
BpmI CTGGAG 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 260
BpuEI CTTGAG 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 712
BsaBI GATNNNNATC 1 cut(s) 317
BsaHI GRCGYC 1 cut(s) 901
BsaJI CCNNGG 3 cut(s) 32, 183, 544
BsaWI WCCGGW 1 cut(s) 877
BsaXI ACNNNNNCTCC 2 cut(s) 540, 570
Bsc4I CCNNNNNNNGG 3 cut(s) 186, 501, 697
Bse1I ACTGG 2 cut(s) 178, 691
Bse21I CCTNAGG 1 cut(s) 476
Bse8I GATNNNNATC 1 cut(s) 317
BseBI CCWGG 1 cut(s) 698
BseDI CCNNGG 3 cut(s) 32, 183, 544
BseGI GGATG 4 cut(s) 237, 595, 643, 729
BseJI GATNNNNATC 1 cut(s) 317
BseLI CCNNNNNNNGG 3 cut(s) 186, 501, 697
BseMII CTCAG 1 cut(s) 467
BseNI ACTGG 2 cut(s) 178, 691
BseRI GAGGAG 2 cut(s) 116, 328
BseXI GCAGC 3 cut(s) 562, 604, 752
Bsh1236I CGCG 2 cut(s) 198, 429
BshFI GGCC 3 cut(s) 218, 228, 381
BsiSI CCGG 2 cut(s) 570, 878
BslFI GGGAC 1 cut(s) 572
BslI CCNNNNNNNGG 3 cut(s) 186, 501, 697
BsmAI GTCTC 2 cut(s) 280, 908
BsmBI CGTCTC 1 cut(s) 908
BsmFI GGGAC 1 cut(s) 572
BsnI GGCC 3 cut(s) 218, 228, 381
Bsp119I TTCGAA 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 844
Bsp143I GATC 7 cut(s) 189, 312, 318, 512, 650, 807, 818
Bsp19I CCATGG 1 cut(s) 32
BspACI CCGC 6 cut(s) 139, 148, 538, 541, 794, 797
BspANI GGCC 3 cut(s) 218, 228, 381
BspCNI CTCAG 1 cut(s) 468
BspFNI CGCG 2 cut(s) 198, 429
BspLI GGNNCC 3 cut(s) 178, 550, 702
BspPI GGATC 2 cut(s) 197, 826
BspT104I TTCGAA 1 cut(s) 260
BsrI ACTGG 2 cut(s) 178, 691
BssECI CCNNGG 3 cut(s) 32, 183, 544
BssMI GATC 7 cut(s) 189, 312, 318, 512, 650, 807, 818
BssNI GRCGYC 1 cut(s) 901
BssSI CACGAG 2 cut(s) 209, 443
BssT1I CCWWGG 1 cut(s) 32
Bst2BI CACGAG 2 cut(s) 209, 443
Bst2UI CCWGG 1 cut(s) 698
Bst4CI ACNGT 1 cut(s) 771
Bst6I CTCTTC 1 cut(s) 855
BstACI GRCGYC 1 cut(s) 901
BstBAI YACGTR 1 cut(s) 712
BstBI TTCGAA 1 cut(s) 260
BstC8I GCNNGC 3 cut(s) 13, 216, 830
BstDEI CTNAG 2 cut(s) 77, 476
BstDSI CCRYGG 2 cut(s) 32, 544
BstF5I GGATG 4 cut(s) 237, 595, 643, 729
BstFNI CGCG 2 cut(s) 198, 429
BstH2I RGCGCY 1 cut(s) 576
BstHHI GCGC 4 cut(s) 200, 431, 575, 805
BstKTI GATC 7 cut(s) 192, 315, 321, 515, 653, 810, 821
BstMAI GTCTC 2 cut(s) 280, 908
BstMBI GATC 7 cut(s) 189, 312, 318, 512, 650, 807, 818
BstMWI GCNNNNNNNGC 6 cut(s) 60, 145, 614, 626, 794, 800
BstNI CCWGG 1 cut(s) 698
BstNSI RCATGY 2 cut(s) 15, 662
BstSCI CCNGG 1 cut(s) 696
BstSFI CTRYAG 1 cut(s) 744
BstUI CGCG 2 cut(s) 198, 429
BstV1I GCAGC 3 cut(s) 562, 604, 752
BstX2I RGATCY 1 cut(s) 650
BstYI RGATCY 1 cut(s) 650
Bsu36I CCTNAGG 1 cut(s) 476
BsuI GTATCC 1 cut(s) 344
BsuRI GGCC 3 cut(s) 218, 228, 381
BtgI CCRYGG 2 cut(s) 32, 544
BtsCI GGATG 4 cut(s) 237, 595, 643, 729
BtsIMutI CAGTG 3 cut(s) 171, 698, 860
Cac8I GCNNGC 3 cut(s) 13, 216, 830
CfoI GCGC 4 cut(s) 200, 431, 575, 805
Cfr13I GGNCC 2 cut(s) 465, 524
CseI GACGC 2 cut(s) 204, 890
Csp6I GTAC 4 cut(s) 83, 151, 767, 875
CviAII CATG 6 cut(s) 12, 33, 159, 433, 462, 659
CviQI GTAC 4 cut(s) 83, 151, 767, 875
DdeI CTNAG 2 cut(s) 77, 476
DpnI GATC 7 cut(s) 191, 314, 320, 514, 652, 809, 820
DpnII GATC 7 cut(s) 189, 312, 318, 512, 650, 807, 818
EaeI YGGCCR 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 855
EarI CTCTTC 1 cut(s) 855
Eco130I CCWWGG 1 cut(s) 32
Eco147I AGGCCT 1 cut(s) 381
Eco24I GRGCYC 1 cut(s) 844
Eco47I GGWCC 2 cut(s) 465, 524
Eco57I CTGAAG 3 cut(s) 363, 798, 836
Eco81I CCTNAGG 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 696
EcoT14I CCWWGG 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 844
ErhI CCWWGG 1 cut(s) 32
Esp3I CGTCTC 1 cut(s) 908
FaeI CATG 6 cut(s) 15, 36, 162, 436, 465, 662
FalI AAGNNNNNCTT 1 cut(s) 919
FaqI GGGAC 1 cut(s) 572
FatI CATG 6 cut(s) 11, 32, 158, 432, 461, 658
FblI GTMKAC 1 cut(s) 783
Fnu4HI GCNGC 6 cut(s) 140, 541, 576, 618, 741, 795
FokI GGATG 4 cut(s) 224, 582, 650, 736
FriOI GRGCYC 1 cut(s) 844
Fsp4HI GCNGC 6 cut(s) 140, 541, 576, 618, 741, 795
FspBI CTAG 2 cut(s) 242, 756
GlaI GCGC 4 cut(s) 199, 430, 574, 804
GluI GCNGC 6 cut(s) 140, 541, 576, 618, 741, 795
GsuI CTGGAG 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 576
HaeIII GGCC 3 cut(s) 218, 228, 381
HapII CCGG 2 cut(s) 570, 878
HgaI GACGC 2 cut(s) 204, 890
HhaI GCGC 4 cut(s) 200, 431, 575, 805
Hin1I GRCGYC 1 cut(s) 901
Hin1II CATG 6 cut(s) 15, 36, 162, 436, 465, 662
Hin6I GCGC 4 cut(s) 198, 429, 573, 803
HinP1I GCGC 4 cut(s) 198, 429, 573, 803
HincII GTYRAC 2 cut(s) 451, 717
HindII GTYRAC 2 cut(s) 451, 717
HindIII AAGCTT 1 cut(s) 627
HinfI GANTC 3 cut(s) 25, 120, 269
HpaII CCGG 2 cut(s) 570, 878
HphI GGTGA 2 cut(s) 103, 527
Hpy166II GTNNAC 4 cut(s) 111, 451, 717, 784
Hpy188I TCNGA 8 cut(s) 22, 194, 280, 343, 524, 733, 812, 914
Hpy188III TCNNGA 6 cut(s) 209, 310, 316, 475, 488, 648
Hpy8I GTNNAC 4 cut(s) 111, 451, 717, 784
Hpy99I CGWCG 1 cut(s) 775
HpyAV CCTTC 3 cut(s) 338, 362, 600
HpyCH4III ACNGT 1 cut(s) 771
HpyCH4IV ACGT 3 cut(s) 408, 711, 823
HpyCH4V TGCA 3 cut(s) 4, 15, 641
HpyF10VI GCNNNNNNNGC 6 cut(s) 60, 145, 614, 626, 794, 800
HpyF3I CTNAG 2 cut(s) 77, 476
HpySE526I ACGT 3 cut(s) 408, 711, 823
Hsp92I GRCGYC 1 cut(s) 901
Hsp92II CATG 6 cut(s) 15, 36, 162, 436, 465, 662
HspAI GCGC 4 cut(s) 198, 429, 573, 803
Kzo9I GATC 7 cut(s) 189, 312, 318, 512, 650, 807, 818
LmnI GCTCC 5 cut(s) 8, 176, 356, 548, 572
LpnPI CCDG 9 cut(s) 159, 200, 488, 583, 683, 704, 710, 789, 891
Lsp1109I GCAGC 3 cut(s) 562, 604, 752
LweI GCATC 2 cut(s) 24, 628
MaeI CTAG 2 cut(s) 242, 756
MaeII ACGT 3 cut(s) 408, 711, 823
MaeIII GTNAC 2 cut(s) 169, 505
MalI GATC 7 cut(s) 191, 314, 320, 514, 652, 809, 820
MboI GATC 7 cut(s) 189, 312, 318, 512, 650, 807, 818
MboII GAAGA 3 cut(s) 430, 842, 936
MflI RGATCY 1 cut(s) 650
MhlI GDGCHC 1 cut(s) 844
MlsI TGGCCA 1 cut(s) 218
MluCI AATT 1 cut(s) 813
MluNI TGGCCA 1 cut(s) 218
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 2 cut(s) 313, 847
Mox20I TGGCCA 1 cut(s) 218
Mph1103I ATGCAT 1 cut(s) 17
MroXI GAANNNNTTC 1 cut(s) 256
MscI TGGCCA 1 cut(s) 218
MseI TTAA 3 cut(s) 231, 483, 937
Msp20I TGGCCA 1 cut(s) 218
MspI CCGG 2 cut(s) 570, 878
MspR9I CCNGG 1 cut(s) 698
MvaI CCWGG 1 cut(s) 698
MvnI CGCG 2 cut(s) 198, 429
MwoI GCNNNNNNNGC 6 cut(s) 60, 145, 614, 626, 794, 800
NcoI CCATGG 1 cut(s) 32
NdeII GATC 7 cut(s) 189, 312, 318, 512, 650, 807, 818
NlaIII CATG 6 cut(s) 15, 36, 162, 436, 465, 662
NlaIV GGNNCC 3 cut(s) 178, 550, 702
NmuCI GTSAC 2 cut(s) 169, 505
NsiI ATGCAT 1 cut(s) 17
NspI RCATGY 2 cut(s) 15, 662
NspV TTCGAA 1 cut(s) 260
PaeI GCATGC 1 cut(s) 15
PceI AGGCCT 1 cut(s) 381
PciI ACATGT 1 cut(s) 658
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PdmI GAANNNNTTC 1 cut(s) 256
PfeI GAWTC 2 cut(s) 120, 269
PflMI CCANNNNNTGG 1 cut(s) 501
PkrI GCNGC 6 cut(s) 141, 542, 577, 619, 742, 796
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
Ppu21I YACGTR 1 cut(s) 712
PscI ACATGT 1 cut(s) 658
Psp1406I AACGTT 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 696
PspGI CCWGG 1 cut(s) 696
PspN4I GGNNCC 3 cut(s) 178, 550, 702
PspPI GGNCC 2 cut(s) 465, 524
PsuI RGATCY 1 cut(s) 650
RsaI GTAC 4 cut(s) 84, 152, 768, 876
RsaNI GTAC 4 cut(s) 83, 151, 767, 875
SaqAI TTAA 3 cut(s) 231, 483, 937
SatI GCNGC 6 cut(s) 140, 541, 576, 618, 741, 795
Sau3AI GATC 7 cut(s) 189, 312, 318, 512, 650, 807, 818
Sau96I GGNCC 2 cut(s) 465, 524
ScaI AGTACT 1 cut(s) 84
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 698
SduI GDGCHC 1 cut(s) 844
SfaNI GCATC 2 cut(s) 24, 628
SfcI CTRYAG 1 cut(s) 744
SfuI TTCGAA 1 cut(s) 260
SinI GGWCC 2 cut(s) 465, 524
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SphI GCATGC 1 cut(s) 15
Sse9I AATT 1 cut(s) 813
SseBI AGGCCT 1 cut(s) 381
SsiI CCGC 6 cut(s) 139, 148, 538, 541, 794, 797
SspI AATATT 1 cut(s) 562
SspMI CTAG 2 cut(s) 242, 756
StuI AGGCCT 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 696
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 771
TaiI ACGT 3 cut(s) 411, 714, 826
TaqI TCGA 3 cut(s) 260, 267, 363
TasI AATT 1 cut(s) 813
TatI WGTACW 1 cut(s) 82
TauI GCSGC 3 cut(s) 142, 543, 797
TfiI GAWTC 2 cut(s) 120, 269
Tru1I TTAA 3 cut(s) 231, 483, 937
Tru9I TTAA 3 cut(s) 231, 483, 937
TscAI CASTG 3 cut(s) 178, 698, 860
TseFI GTSAC 2 cut(s) 169, 505
TseI GCWGC 3 cut(s) 575, 617, 740
Tsp45I GTSAC 2 cut(s) 169, 505
TspDTI ATGAA 2 cut(s) 46, 79
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 3 cut(s) 178, 698, 860
Van91I CCANNNNNTGG 1 cut(s) 501
VpaK11BI GGWCC 2 cut(s) 465, 524
XceI RCATGY 2 cut(s) 15, 662
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XmiI GTMKAC 1 cut(s) 783
XmnI GAANNNNTTC 1 cut(s) 256
XspI CTAG 2 cut(s) 242, 756
ZrmI AGTACT 1 cut(s) 84
Zsp2I ATGCAT 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.