Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0017543

Physical Location & Seq

Genomic Coordinates Forward (+)

26920432 .. 26922550

Gene Structure 2119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g24990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGTACATACGTCTAGAGCTGCATGCAATATTCATGAGTACCTAACCAACCAGCAGCCCGTCTGGCTTCTCCTTCTCTCTTCTCTTGGCTTCTTCATCTTCCTCAAACACTCTATCTCTCTAGCCAGATGGCTCTTCATAACTTTTCTCCGGCCGGCTAAAGATCTGGAAAGATCGTACGGCTCTTGGGGCTTGATCACTGGTGCCACTGATGGCATAGGCAAGGCCTTTGCCTACCAACTAGCCAAGAAAGGCCTTAACCTTGTTCTAGTTAGCCGCAGCTCTAACAAGCTCGAATCAGTCTCCAAAGAAATACAATCCCATTTCCCCGATGTGAAGATCAAAACTGTTGCCTTCGACTTCTCAAGCGATGAGGGTTTGGTTAAGTTGGTAGAAGAGAAGATCAAGGGGTTGGACGTGGGAATTCTGATAAATAATGTCGGAGTGACTTACCCGGCAGCAAGTTACTTCCATGAGGTGGATGAGAAAGTGTGGATGAATATTATTAGGGTGAATTTGGAGGGGACTACTAGGGTTACCATGGCTGTTGTACCAGGGATGCTTCAAAGGAAGAGAGGTGCCATTGTTAATCTTGGATCTGGGGCAGCCGTTGTGGTTCCTTCCCATCCTCTTTACACAATCTATGCAGCTACCAAAGCTTACGTGGACAAACTGTCTACATCTCTGTACATGGAGTACAAGGAGTACGGCATCGACGTGCAGATTCAGGTTCCGTTATATGTAGCAACGAAGATGGTGTCGAAAGTTGCTGCGATTGAGAGGTCGTCATTGTTCATACCTTCTGCAGATGCTTATGCAGAGGCAGCAGTAAAGCGCATTGGATATGAAGCACGGTGCACGCCGTTTTGGGCTCACTCGCTTCAGTGGTGGTTCGCGCGGTTGGTCCCCGACTCTCTTCTTGATGCCTGGCGCTTGTCTATCGGTTTAAACAGAAGGGGAAAACTAGCAGCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016614 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045703 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212

Pfam Domains

Protein Families

adh_short

Protein Analysis

326

Amino Acids

36.22

Weight (kDa)

9.44

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	65 - 257	3.6e-42	short chain dehydrogenase
KR	PF08659	65 - 227	3.1e-09	KR domain
adh_short_C2	PF13561	68 - 259	1.7e-25	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24470
fragaria_vesca	FvH4_4g24990
malus_domestica	MD16G1107400.v1.1
prunus_persica	Prupe.1G239000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0432051
rosa_laevigata	RLG00000006866
rosa_multiflora	Rmu_sc0004965.1_g000024
rosa_roxburghii	Rroxscaffold_5G00373600
rosa_samantha	Rh4BG319000 Rh4CG334500 Rh4DG314200
rosa_wichuraiana	Rw4G027110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	203, 578
AccB7I	CCANNNNNTGG	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	677
AccII	CGCG	2 cut(s)	896, 898
AciI	CCGC	2 cut(s)	277, 898
AclWI	GGATC	1 cut(s)	604
AcoI	YGGCCR	1 cut(s)	152
AcsI	RAATTY	2 cut(s)	423, 514
AcuI	CTGAAG	1 cut(s)	866
AfaI	GTAC	7 cut(s)	6, 41, 179, 552, 689, 698, 707
AfiI	CCNNNNNNNGG	1 cut(s)	478
AgsI	TTSAA	1 cut(s)	566
AhdI	GACNNNNNGTC	1 cut(s)	673
AjiI	CACGTC	2 cut(s)	418, 718
AjnI	CCWGG	2 cut(s)	553, 926
AluBI	AGCT	6 cut(s)	20, 282, 292, 650, 659, 971
AluI	AGCT	6 cut(s)	20, 282, 292, 650, 659, 971
Alw21I	GWGCWC	1 cut(s)	860
Alw26I	GTCTC	1 cut(s)	307
Alw44I	GTGCAC	1 cut(s)	856
AlwI	GGATC	1 cut(s)	604
AoxI	GGCC	3 cut(s)	152, 225, 253
ApaLI	GTGCAC	1 cut(s)	856
ApeKI	GCWGC	9 cut(s)	20, 55, 279, 458, 605, 647, 770, 824, 968
ApoI	RAATTY	2 cut(s)	423, 514
ArsI	GACNNNNNNTTYG	2 cut(s)	743, 775
AspLEI	GCGC	3 cut(s)	837, 898, 933
AspS9I	GGNCC	1 cut(s)	904
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	523
AvaII	GGWCC	1 cut(s)	904
BaeGI	GKGCMC	1 cut(s)	860
BaeI	ACNNNNGTAYC	1 cut(s)	29
BanI	GGYRCC	2 cut(s)	203, 578
BanII	GRGCYC	1 cut(s)	874
Bbv12I	GWGCWC	1 cut(s)	860
BbvI	GCAGC	8 cut(s)	7, 67, 291, 470, 617, 659, 757, 836
BccI	CCATC	4 cut(s)	123, 206, 633, 748
BceAI	ACGGC	4 cut(s)	196, 593, 724, 847
BciT130I	CCWGG	2 cut(s)	555, 928
BclI	TGATCA	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	7 cut(s)	15, 122, 242, 269, 531, 965, 976
BfmI	CTRYAG	1 cut(s)	804
BfoI	RGCGCY	1 cut(s)	934
BglI	GCCNNNNNGGC	1 cut(s)	64
BglII	AGATCT	1 cut(s)	163
Bme1390I	CCNGG	3 cut(s)	455, 555, 928
Bme18I	GGWCC	1 cut(s)	904
BmeRI	GACNNNNNGTC	1 cut(s)	673
BmgBI	CACGTC	2 cut(s)	418, 718
BmgT120I	GGNCC	1 cut(s)	904
BmiI	GGNNCC	5 cut(s)	205, 580, 618, 732, 906
BmrFI	CCNGG	3 cut(s)	455, 555, 928
BmsI	GCATC	4 cut(s)	549, 720, 799, 913
BpuEI	CTTGAG	1 cut(s)	349
BpuMI	CCSGG	1 cut(s)	455
BsaAI	YACGTR	1 cut(s)	664
BsaJI	CCNNGG	2 cut(s)	540, 554
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	205
BseBI	CCWGG	2 cut(s)	555, 928
BseDI	CCNNGG	2 cut(s)	540, 554
BseGI	GGATG	4 cut(s)	487, 501, 564, 625
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseNI	ACTGG	1 cut(s)	205
BseSI	GKGCMC	1 cut(s)	860
BseX3I	CGGCCG	1 cut(s)	152
BseXI	GCAGC	8 cut(s)	7, 67, 291, 470, 617, 659, 757, 836
BsgI	GTGCAG	1 cut(s)	740
Bsh1236I	CGCG	2 cut(s)	896, 898
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	3 cut(s)	154, 227, 255
BshNI	GGYRCC	2 cut(s)	203, 578
BsiEI	CGRYCG	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	860
BsiSI	CCGG	3 cut(s)	151, 155, 455
BsiWI	CGTACG	1 cut(s)	177
BslFI	GGGAC	2 cut(s)	538, 890
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	2 cut(s)	538, 890
BsnI	GGCC	3 cut(s)	154, 227, 255
Bsp1286I	GDGCHC	2 cut(s)	860, 874
Bsp1407I	TGTACA	1 cut(s)	687
Bsp143I	GATC	6 cut(s)	163, 173, 195, 339, 402, 596
Bsp19I	CCATGG	1 cut(s)	540
BspACI	CCGC	2 cut(s)	277, 898
BspANI	GGCC	3 cut(s)	154, 227, 255
BspFNI	CGCG	2 cut(s)	896, 898
BspHI	TCATGA	1 cut(s)	34
BspLI	GGNNCC	5 cut(s)	205, 580, 618, 732, 906
BspMAI	CTGCAG	1 cut(s)	808
BspPI	GGATC	1 cut(s)	604
BspQI	GCTCTTC	1 cut(s)	140
BspT107I	GGYRCC	2 cut(s)	203, 578
BsrFI	RCCGGY	1 cut(s)	154
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	1 cut(s)	205
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	540, 554
BssMI	GATC	6 cut(s)	163, 173, 195, 339, 402, 596
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	2 cut(s)	555, 928
Bst4CI	ACNGT	3 cut(s)	349, 675, 855
Bst6I	CTCTTC	5 cut(s)	85, 140, 390, 566, 921
BstAUI	TGTACA	1 cut(s)	687
BstBAI	YACGTR	1 cut(s)	664
BstC8I	GCNNGC	3 cut(s)	25, 156, 860
BstDSI	CCRYGG	1 cut(s)	540
BstEII	GGTNACC	1 cut(s)	535
BstF5I	GGATG	4 cut(s)	487, 501, 564, 625
BstFNI	CGCG	2 cut(s)	896, 898
BstH2I	RGCGCY	1 cut(s)	934
BstHHI	GCGC	3 cut(s)	837, 898, 933
BstKTI	GATC	6 cut(s)	166, 176, 198, 342, 405, 599
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	6 cut(s)	163, 173, 195, 339, 402, 596
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 189, 656, 824
BstNI	CCWGG	2 cut(s)	555, 928
BstNSI	RCATGY	1 cut(s)	27
BstPI	GGTNACC	1 cut(s)	535
BstSCI	CCNGG	3 cut(s)	453, 553, 926
BstSFI	CTRYAG	1 cut(s)	804
BstSLI	GKGCMC	1 cut(s)	860
BstUI	CGCG	2 cut(s)	896, 898
BstV1I	GCAGC	8 cut(s)	7, 67, 291, 470, 617, 659, 757, 836
BstX2I	RGATCY	2 cut(s)	163, 596
BstYI	RGATCY	2 cut(s)	163, 596
BstZI	CGGCCG	1 cut(s)	152
BsuRI	GGCC	3 cut(s)	154, 227, 255
BtgI	CCRYGG	1 cut(s)	540
BtgZI	GCGATG	1 cut(s)	384
BtrI	CACGTC	2 cut(s)	418, 718
BtsCI	GGATG	4 cut(s)	487, 501, 564, 625
BtsIMutI	CAGTG	3 cut(s)	198, 207, 890
Cac8I	GCNNGC	3 cut(s)	25, 156, 860
CciI	TCATGA	1 cut(s)	34
CfoI	GCGC	3 cut(s)	837, 898, 933
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	904
Csp6I	GTAC	7 cut(s)	5, 40, 178, 551, 688, 697, 706
CviAII	CATG	5 cut(s)	24, 35, 473, 541, 691
CviQI	GTAC	7 cut(s)	5, 40, 178, 551, 688, 697, 706
DpnI	GATC	6 cut(s)	165, 175, 197, 341, 404, 598
DpnII	GATC	6 cut(s)	163, 173, 195, 339, 402, 596
DraI	TTTAAA	1 cut(s)	948
DriI	GACNNNNNGTC	1 cut(s)	673
EaeI	YGGCCR	1 cut(s)	152
EagI	CGGCCG	1 cut(s)	152
Eam1104I	CTCTTC	5 cut(s)	85, 140, 390, 566, 921
Eam1105I	GACNNNNNGTC	1 cut(s)	673
EarI	CTCTTC	5 cut(s)	85, 140, 390, 566, 921
EclXI	CGGCCG	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	540
Eco147I	AGGCCT	2 cut(s)	227, 255
Eco24I	GRGCYC	1 cut(s)	874
Eco47I	GGWCC	1 cut(s)	904
Eco52I	CGGCCG	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	866
Eco91I	GGTNACC	1 cut(s)	535
EcoO65I	GGTNACC	1 cut(s)	535
EcoRI	GAATTC	1 cut(s)	423
EcoRII	CCWGG	2 cut(s)	553, 926
EcoT14I	CCWWGG	1 cut(s)	540
EcoT38I	GRGCYC	1 cut(s)	874
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	5 cut(s)	27, 38, 476, 544, 694
FaqI	GGGAC	2 cut(s)	538, 890
FatI	CATG	5 cut(s)	23, 34, 472, 540, 690
FbaI	TGATCA	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	677
FokI	GGATG	4 cut(s)	494, 508, 571, 612
FriOI	GRGCYC	1 cut(s)	874
FspBI	CTAG	7 cut(s)	15, 122, 242, 269, 531, 965, 976
GlaI	GCGC	3 cut(s)	836, 897, 932
HaeII	RGCGCY	1 cut(s)	934
HaeIII	GGCC	3 cut(s)	154, 227, 255
HapII	CCGG	3 cut(s)	151, 155, 455
HhaI	GCGC	3 cut(s)	837, 898, 933
Hin1II	CATG	5 cut(s)	27, 38, 476, 544, 694
Hin6I	GCGC	3 cut(s)	835, 896, 931
HinP1I	GCGC	3 cut(s)	835, 896, 931
HindIII	AAGCTT	1 cut(s)	657
HinfI	GANTC	3 cut(s)	296, 724, 911
HpaII	CCGG	3 cut(s)	151, 155, 455
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	3 cut(s)	667, 678, 858
Hpy188I	TCNGA	2 cut(s)	429, 443
Hpy188III	TCNNGA	4 cut(s)	15, 35, 167, 920
Hpy8I	GTNNAC	3 cut(s)	667, 678, 858
Hpy99I	CGWCG	1 cut(s)	719
HpyAV	CCTTC	5 cut(s)	83, 364, 630, 810, 948
HpyCH4III	ACNGT	3 cut(s)	349, 675, 855
HpyCH4IV	ACGT	4 cut(s)	11, 417, 663, 717
HpyCH4V	TGCA	7 cut(s)	23, 27, 647, 721, 806, 818, 858
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 189, 656, 824
HpySE526I	ACGT	4 cut(s)	11, 417, 663, 717
Hsp92II	CATG	5 cut(s)	27, 38, 476, 544, 694
HspAI	GCGC	3 cut(s)	835, 896, 931
KroI	GCCGGC	1 cut(s)	154
KroNI	GCCGGC	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	6 cut(s)	163, 173, 195, 339, 402, 596
LguI	GCTCTTC	1 cut(s)	140
Lsp1109I	GCAGC	8 cut(s)	7, 67, 291, 470, 617, 659, 757, 836
LweI	GCATC	4 cut(s)	549, 720, 799, 913
MaeI	CTAG	7 cut(s)	15, 122, 242, 269, 531, 965, 976
MaeII	ACGT	4 cut(s)	11, 417, 663, 717
MaeIII	GTNAC	3 cut(s)	445, 464, 535
MalI	GATC	6 cut(s)	165, 175, 197, 341, 404, 598
MboI	GATC	6 cut(s)	163, 173, 195, 339, 402, 596
MflI	RGATCY	2 cut(s)	163, 596
MhlI	GDGCHC	2 cut(s)	860, 874
MluCI	AATT	2 cut(s)	423, 514
MlyI	GAGTC	1 cut(s)	905
MmeI	TCCRAC	2 cut(s)	393, 421
MnlI	CCTC	8 cut(s)	113, 367, 469, 514, 569, 639, 774, 814
MroNI	GCCGGC	1 cut(s)	154
MseI	TTAA	4 cut(s)	258, 384, 588, 947
MslI	CAYNNNNRTG	1 cut(s)	716
MspI	CCGG	3 cut(s)	151, 155, 455
MspR9I	CCNGG	3 cut(s)	455, 555, 928
MssI	GTTTAAAC	1 cut(s)	948
MvaI	CCWGG	2 cut(s)	555, 928
MvnI	CGCG	2 cut(s)	896, 898
MwoI	GCNNNNNNNGC	4 cut(s)	64, 189, 656, 824
NaeI	GCCGGC	1 cut(s)	156
NciI	CCSGG	1 cut(s)	455
NcoI	CCATGG	1 cut(s)	540
NdeII	GATC	6 cut(s)	163, 173, 195, 339, 402, 596
NgoMIV	GCCGGC	1 cut(s)	154
NlaIII	CATG	5 cut(s)	27, 38, 476, 544, 694
NlaIV	GGNNCC	5 cut(s)	205, 580, 618, 732, 906
NmuCI	GTSAC	1 cut(s)	445
NspI	RCATGY	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	27
PagI	TCATGA	1 cut(s)	34
PceI	AGGCCT	2 cut(s)	227, 255
PciSI	GCTCTTC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	714
PdiI	GCCGGC	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	296, 724
Pfl23II	CGTACG	1 cut(s)	177
PflMI	CCANNNNNTGG	1 cut(s)	478
PleI	GAGTC	1 cut(s)	905
PmeI	GTTTAAAC	1 cut(s)	948
PpsI	GAGTC	1 cut(s)	905
Ppu21I	YACGTR	1 cut(s)	664
Psp6I	CCWGG	2 cut(s)	553, 926
PspEI	GGTNACC	1 cut(s)	535
PspGI	CCWGG	2 cut(s)	553, 926
PspLI	CGTACG	1 cut(s)	177
PspN4I	GGNNCC	5 cut(s)	205, 580, 618, 732, 906
PspPI	GGNCC	1 cut(s)	904
PstI	CTGCAG	1 cut(s)	808
PsuI	RGATCY	2 cut(s)	163, 596
RsaI	GTAC	7 cut(s)	6, 41, 179, 552, 689, 698, 707
RsaNI	GTAC	7 cut(s)	5, 40, 178, 551, 688, 697, 706
RseI	CAYNNNNRTG	1 cut(s)	716
SapI	GCTCTTC	1 cut(s)	140
SaqAI	TTAA	4 cut(s)	258, 384, 588, 947
Sau3AI	GATC	6 cut(s)	163, 173, 195, 339, 402, 596
Sau96I	GGNCC	1 cut(s)	904
SchI	GAGTC	1 cut(s)	905
ScrFI	CCNGG	3 cut(s)	455, 555, 928
SduI	GDGCHC	2 cut(s)	860, 874
SfaNI	GCATC	4 cut(s)	549, 720, 799, 913
SfcI	CTRYAG	1 cut(s)	804
SinI	GGWCC	1 cut(s)	904
SmiMI	CAYNNNNRTG	1 cut(s)	716
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	2 cut(s)	423, 514
SseBI	AGGCCT	2 cut(s)	227, 255
SsiI	CCGC	2 cut(s)	277, 898
SspI	AATATT	2 cut(s)	31, 502
SspMI	CTAG	7 cut(s)	15, 122, 242, 269, 531, 965, 976
StuI	AGGCCT	2 cut(s)	227, 255
StyD4I	CCNGG	3 cut(s)	453, 553, 926
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	3 cut(s)	349, 675, 855
TaiI	ACGT	4 cut(s)	14, 420, 666, 720
TaqI	TCGA	4 cut(s)	294, 357, 714, 761
TasI	AATT	2 cut(s)	423, 514
TatI	WGTACW	2 cut(s)	687, 696
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	296, 724
Tru1I	TTAA	4 cut(s)	258, 384, 588, 947
Tru9I	TTAA	4 cut(s)	258, 384, 588, 947
TscAI	CASTG	3 cut(s)	205, 214, 890
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	9 cut(s)	20, 55, 279, 458, 605, 647, 770, 824, 968
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	6 cut(s)	23, 85, 127, 512, 784, 861
TspGWI	ACGGA	1 cut(s)	723
TspRI	CASTG	3 cut(s)	205, 214, 890
Van91I	CCANNNNNTGG	1 cut(s)	478
VneI	GTGCAC	1 cut(s)	856
VpaK11BI	GGWCC	1 cut(s)	904
XapI	RAATTY	2 cut(s)	423, 514
XbaI	TCTAGA	1 cut(s)	14
XceI	RCATGY	1 cut(s)	27
XcmI	CCANNNNNNNNNTGG	1 cut(s)	661
XmiI	GTMKAC	1 cut(s)	677
XspI	CTAG	7 cut(s)	15, 122, 242, 269, 531, 965, 976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.