Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0017543

Physical Location & Seq

Genomic Coordinates Reverse (-)

7522910 .. 7525249

Gene Structure 2340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1107400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGTGCCTCCATTTCATGACCTAACGACCCAACCCCTCTGGCTTCTCCTTCCTTCCACTCTTGGCTTCTTCATCCTCCTCAAGCATATCACCTCTCTGGCCAAATGGGTCTTCATCCTCCTCCTCAGAGCCCCCAAAAACCTGAAAAATTACGGCTCGTGGGCATTGGTCACCGGTGCAACCGACGGCATAGGAAAAGCATTTGCCTTCCAACTTGCCCAAAAAGGCCTAAATATAGTCCTAGTCAGCCGGAACTCCACCAAGCTCAAATCAGTCTCCGATAAAATCCATGCAAACTCTCCCTCTACCCTAATAAAAACCATTGCATTCGACTTCTCAGGCAGCGGCTTGGACGGGTTGGACGAGCAGCTGGAGAAGGAGATCAGGGGTTTGGACATCGGCGTTTTGATCAACAACGTCGGGGTTACATACCCGAGTGCAGGATTCTTTCACGAGGTTGATGAGGAAGTGTGGATGAACGTTGTGAAGGTGAATGTAGAGGGTACAGCTAGAGTGAGCATGGCAGTTGTGCGAGGCATGGTTGAAAGGAAGAGAGGTGCAATAGTTAATATTGGTTCTGGGGCTGGCATTGTTGTGCCTTCTCATCCTCTCTTCACGATCTACGCCGCTACAAAATCTTATGTGGATCAACTGTCTAGATCCCTCCACGCGGAATACAAGATGTACGGAATTGATGTGCAAAGTCAGGTACCATTATACGTAGCAACAAAACTGGCGTCGAGGGTTGCTTCGATCGAAAGGCCCTCCCTCTTCATACCAACCCCAGATGCTTATGCAAAGGCAGCCATTCAGCGGATTGGCTATGAAGCTCGCTGCGCTCCGTTCTGGGCTCACTCAGTCCAGTGGTTCTTCTCGCGCTTGGCCCCCGACTCTCTTCTCGATGCTTGGCGCCTCTCTATTGGTTTAAAAAGAAGGGGGAAGAAACTCCATGAAGAACTAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016614 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045703 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212

Pfam Domains

Protein Families

adh_short

Protein Analysis

322

Amino Acids

35.45

Weight (kDa)

9.59

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	54 - 249	2.2e-40	short chain dehydrogenase
KR	PF08659	54 - 224	1.4e-07	KR domain
adh_short_C2	PF13561	59 - 251	2.4e-22	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24470
fragaria_vesca	FvH4_4g24990
malus_domestica	MD16G1107400.v1.1
prunus_persica	Prupe.1G239000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0432051
rosa_laevigata	RLG00000006866
rosa_multiflora	Rmu_sc0004965.1_g000024
rosa_roxburghii	Rroxscaffold_5G00373600
rosa_samantha	Rh4BG319000 Rh4CG334500 Rh4DG314200
rosa_wichuraiana	Rw4G027110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	709
AccB1I	GGYRCC	3 cut(s)	4, 709, 909
AccII	CGCG	2 cut(s)	671, 877
AciI	CCGC	4 cut(s)	345, 627, 671, 814
AclI	AACGTT	1 cut(s)	480
AclWI	GGATC	2 cut(s)	654, 654
AcoI	YGGCCR	1 cut(s)	99
AcyI	GRCGYC	2 cut(s)	737, 910
AfaI	GTAC	3 cut(s)	505, 686, 711
AfiI	CCNNNNNNNGG	3 cut(s)	440, 670, 813
AgeI	ACCGGT	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	545
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	4 cut(s)	265, 370, 509, 830
AluI	AGCT	4 cut(s)	265, 370, 509, 830
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	2 cut(s)	654, 654
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	4 cut(s)	99, 226, 761, 882
ApeKI	GCWGC	4 cut(s)	342, 367, 803, 834
ArsI	GACNNNNNNTTYG	2 cut(s)	722, 754
AsiGI	ACCGGT	1 cut(s)	173
Asp718I	GGTACC	1 cut(s)	709
AspLEI	GCGC	3 cut(s)	839, 879, 912
AspS9I	GGNCC	2 cut(s)	762, 883
AsuHPI	GGTGA	3 cut(s)	82, 163, 502
AvaI	CYCGRG	1 cut(s)	433
BalI	TGGCCA	1 cut(s)	101
BanI	GGYRCC	3 cut(s)	4, 709, 909
BanII	GRGCYC	2 cut(s)	133, 853
BauI	CACGAG	2 cut(s)	157, 452
BbsI	GAAGAC	1 cut(s)	103
BbvI	GCAGC	4 cut(s)	354, 379, 815, 821
BceAI	ACGGC	2 cut(s)	169, 202
BclI	TGATCA	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	3 cut(s)	242, 510, 657
BfoI	RGCGCY	1 cut(s)	913
BisI	GCNGC	6 cut(s)	343, 346, 368, 627, 804, 835
BlsI	GCNGC	6 cut(s)	344, 347, 369, 628, 805, 836
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	2 cut(s)	762, 883
BmiI	GGNNCC	4 cut(s)	6, 711, 885, 911
BmsI	GCATC	2 cut(s)	778, 892
BpiI	GAAGAC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	721
BsaHI	GRCGYC	2 cut(s)	737, 910
BsaWI	WCCGGW	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	3 cut(s)	440, 670, 813
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	738, 862
Bse3DI	GCAATG	1 cut(s)	321
BseGI	GGATG	4 cut(s)	72, 114, 480, 604
BseLI	CCNNNNNNNGG	3 cut(s)	440, 670, 813
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	3 cut(s)	139, 351, 870
BseNI	ACTGG	2 cut(s)	738, 862
BseRI	GAGGAG	3 cut(s)	68, 110, 113
BseXI	GCAGC	4 cut(s)	354, 379, 815, 821
BsgI	GTGCAG	1 cut(s)	459
Bsh1236I	CGCG	2 cut(s)	671, 877
Bsh1285I	CGRYCG	1 cut(s)	756
BshFI	GGCC	4 cut(s)	101, 228, 763, 884
BshNI	GGYRCC	3 cut(s)	4, 709, 909
BshTI	ACCGGT	1 cut(s)	173
BsiEI	CGRYCG	1 cut(s)	756
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	174, 250
BslI	CCNNNNNNNGG	3 cut(s)	440, 670, 813
BsmAI	GTCTC	1 cut(s)	280
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	4 cut(s)	101, 228, 763, 884
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	2 cut(s)	133, 853
Bsp143I	GATC	6 cut(s)	381, 408, 618, 646, 659, 753
BspACI	CCGC	4 cut(s)	345, 627, 671, 814
BspANI	GGCC	4 cut(s)	101, 228, 763, 884
BspCNI	CTCAG	3 cut(s)	138, 350, 869
BspFNI	CGCG	2 cut(s)	671, 877
BspHI	TCATGA	1 cut(s)	16
BspLI	GGNNCC	4 cut(s)	6, 711, 885, 911
BspPI	GGATC	2 cut(s)	654, 654
BspT107I	GGYRCC	3 cut(s)	4, 709, 909
BsrDI	GCAATG	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	738, 862
BssAI	RCCGGY	1 cut(s)	173
BssMI	GATC	6 cut(s)	381, 408, 618, 646, 659, 753
BssNI	GRCGYC	2 cut(s)	737, 910
BssSI	CACGAG	2 cut(s)	157, 452
Bst2BI	CACGAG	2 cut(s)	157, 452
Bst4CI	ACNGT	1 cut(s)	654
Bst6I	CTCTTC	4 cut(s)	545, 617, 776, 900
BstACI	GRCGYC	2 cut(s)	737, 910
BstBAI	YACGTR	1 cut(s)	721
BstC8I	GCNNGC	2 cut(s)	586, 832
BstDEI	CTNAG	3 cut(s)	125, 337, 856
BstEII	GGTNACC	1 cut(s)	169
BstF5I	GGATG	4 cut(s)	72, 114, 480, 604
BstFNI	CGCG	2 cut(s)	671, 877
BstH2I	RGCGCY	1 cut(s)	913
BstHHI	GCGC	3 cut(s)	839, 879, 912
BstKTI	GATC	6 cut(s)	384, 411, 621, 649, 662, 756
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	6 cut(s)	381, 408, 618, 646, 659, 753
BstMCI	CGRYCG	1 cut(s)	756
BstMWI	GCNNNNNNNGC	2 cut(s)	803, 836
BstPI	GGTNACC	1 cut(s)	169
BstSNI	TACGTA	1 cut(s)	721
BstUI	CGCG	2 cut(s)	671, 877
BstV1I	GCAGC	4 cut(s)	354, 379, 815, 821
BstV2I	GAAGAC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	659
BstYI	RGATCY	1 cut(s)	659
BsuRI	GGCC	4 cut(s)	101, 228, 763, 884
BtsCI	GGATG	4 cut(s)	72, 114, 480, 604
BtsIMutI	CAGTG	1 cut(s)	869
Cac8I	GCNNGC	2 cut(s)	586, 832
CciI	TCATGA	1 cut(s)	16
CfoI	GCGC	3 cut(s)	839, 879, 912
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	762, 883
CseI	GACGC	1 cut(s)	726
Csp6I	GTAC	3 cut(s)	504, 685, 710
CspAI	ACCGGT	1 cut(s)	173
CviAII	CATG	5 cut(s)	17, 290, 520, 538, 950
CviQI	GTAC	3 cut(s)	504, 685, 710
DdeI	CTNAG	3 cut(s)	125, 337, 856
DinI	GGCGCC	1 cut(s)	911
DpnI	GATC	6 cut(s)	383, 410, 620, 648, 661, 755
DpnII	GATC	6 cut(s)	381, 408, 618, 646, 659, 753
DraI	TTTAAA	1 cut(s)	927
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	4 cut(s)	545, 617, 776, 900
EarI	CTCTTC	4 cut(s)	545, 617, 776, 900
Eco105I	TACGTA	1 cut(s)	721
Eco147I	AGGCCT	1 cut(s)	228
Eco24I	GRGCYC	2 cut(s)	133, 853
Eco88I	CYCGRG	1 cut(s)	433
Eco91I	GGTNACC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	762
EcoO65I	GGTNACC	1 cut(s)	169
EcoT38I	GRGCYC	2 cut(s)	133, 853
EgeI	GGCGCC	1 cut(s)	911
EheI	GGCGCC	1 cut(s)	911
FaeI	CATG	5 cut(s)	20, 293, 523, 541, 953
FatI	CATG	5 cut(s)	16, 289, 519, 537, 949
FbaI	TGATCA	1 cut(s)	408
Fnu4HI	GCNGC	6 cut(s)	343, 346, 368, 627, 804, 835
FokI	GGATG	4 cut(s)	59, 101, 487, 591
FriOI	GRGCYC	2 cut(s)	133, 853
Fsp4HI	GCNGC	6 cut(s)	343, 346, 368, 627, 804, 835
FspBI	CTAG	3 cut(s)	242, 510, 657
GlaI	GCGC	3 cut(s)	838, 878, 911
GluI	GCNGC	6 cut(s)	343, 346, 368, 627, 804, 835
GsuI	CTGGAG	1 cut(s)	392
HaeII	RGCGCY	1 cut(s)	913
HaeIII	GGCC	4 cut(s)	101, 228, 763, 884
HapII	CCGG	2 cut(s)	174, 250
HgaI	GACGC	1 cut(s)	726
HhaI	GCGC	3 cut(s)	839, 879, 912
Hin1I	GRCGYC	2 cut(s)	737, 910
Hin1II	CATG	5 cut(s)	20, 293, 523, 541, 953
Hin6I	GCGC	3 cut(s)	837, 877, 910
HinP1I	GCGC	3 cut(s)	837, 877, 910
HinfI	GANTC	2 cut(s)	444, 890
HpaII	CCGG	2 cut(s)	174, 250
HphI	GGTGA	3 cut(s)	82, 163, 502
Hpy188I	TCNGA	2 cut(s)	128, 280
Hpy188III	TCNNGA	5 cut(s)	17, 452, 616, 657, 899
Hpy99I	CGWCG	3 cut(s)	188, 422, 742
HpyAV	CCTTC	7 cut(s)	59, 63, 217, 370, 481, 609, 927
HpyCH4III	ACNGT	1 cut(s)	654
HpyCH4IV	ACGT	3 cut(s)	417, 480, 720
HpyCH4V	TGCA	7 cut(s)	179, 293, 326, 440, 560, 700, 797
HpyF10VI	GCNNNNNNNGC	2 cut(s)	803, 836
HpyF3I	CTNAG	3 cut(s)	125, 337, 856
HpySE526I	ACGT	3 cut(s)	417, 480, 720
Hsp92I	GRCGYC	2 cut(s)	737, 910
Hsp92II	CATG	5 cut(s)	20, 293, 523, 541, 953
HspAI	GCGC	3 cut(s)	837, 877, 910
KasI	GGCGCC	1 cut(s)	909
KpnI	GGTACC	1 cut(s)	713
Ksp22I	TGATCA	1 cut(s)	408
Kzo9I	GATC	6 cut(s)	381, 408, 618, 646, 659, 753
LmnI	GCTCC	1 cut(s)	844
Lsp1109I	GCAGC	4 cut(s)	354, 379, 815, 821
LweI	GCATC	2 cut(s)	778, 892
MaeI	CTAG	3 cut(s)	242, 510, 657
MaeII	ACGT	3 cut(s)	417, 480, 720
MaeIII	GTNAC	2 cut(s)	169, 424
MalI	GATC	6 cut(s)	383, 410, 620, 648, 661, 755
MboI	GATC	6 cut(s)	381, 408, 618, 646, 659, 753
MboII	GAAGA	9 cut(s)	61, 103, 562, 604, 763, 862, 887, 952, 965
MflI	RGATCY	1 cut(s)	659
MhlI	GDGCHC	2 cut(s)	133, 853
MlsI	TGGCCA	1 cut(s)	101
MluCI	AATT	2 cut(s)	148, 690
MluNI	TGGCCA	1 cut(s)	101
Mly113I	GGCGCC	1 cut(s)	910
MlyI	GAGTC	1 cut(s)	884
MmeI	TCCRAC	2 cut(s)	235, 339
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	2 cut(s)	567, 926
MslI	CAYNNNNRTG	1 cut(s)	593
Msp20I	TGGCCA	1 cut(s)	101
MspA1I	CMGCKG	3 cut(s)	345, 370, 814
MspI	CCGG	2 cut(s)	174, 250
Mva1269I	GAATGC	1 cut(s)	326
MvnI	CGCG	2 cut(s)	671, 877
MwoI	GCNNNNNNNGC	2 cut(s)	803, 836
NarI	GGCGCC	1 cut(s)	910
NdeII	GATC	6 cut(s)	381, 408, 618, 646, 659, 753
NlaIII	CATG	5 cut(s)	20, 293, 523, 541, 953
NlaIV	GGNNCC	4 cut(s)	6, 711, 885, 911
NmuCI	GTSAC	1 cut(s)	169
PagI	TCATGA	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PctI	GAATGC	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	444
PinAI	ACCGGT	1 cut(s)	173
PkrI	GCNGC	6 cut(s)	344, 347, 369, 628, 805, 836
Ple19I	CGATCG	1 cut(s)	756
PleI	GAGTC	1 cut(s)	884
PluTI	GGCGCC	1 cut(s)	913
PpsI	GAGTC	1 cut(s)	884
Ppu21I	YACGTR	1 cut(s)	721
Psp1406I	AACGTT	1 cut(s)	480
PspEI	GGTNACC	1 cut(s)	169
PspN4I	GGNNCC	4 cut(s)	6, 711, 885, 911
PspPI	GGNCC	2 cut(s)	762, 883
PsuI	RGATCY	1 cut(s)	659
PvuI	CGATCG	1 cut(s)	756
PvuII	CAGCTG	1 cut(s)	370
RsaI	GTAC	3 cut(s)	505, 686, 711
RsaNI	GTAC	3 cut(s)	504, 685, 710
RseI	CAYNNNNRTG	1 cut(s)	593
SaqAI	TTAA	2 cut(s)	567, 926
SatI	GCNGC	6 cut(s)	343, 346, 368, 627, 804, 835
Sau3AI	GATC	6 cut(s)	381, 408, 618, 646, 659, 753
Sau96I	GGNCC	2 cut(s)	762, 883
SchI	GAGTC	1 cut(s)	884
SduI	GDGCHC	2 cut(s)	133, 853
SfaNI	GCATC	2 cut(s)	778, 892
SfoI	GGCGCC	1 cut(s)	911
SgrAI	CRCCGGYG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	593
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SnaBI	TACGTA	1 cut(s)	721
Sse9I	AATT	2 cut(s)	148, 690
SseBI	AGGCCT	1 cut(s)	228
SsiI	CCGC	4 cut(s)	345, 627, 671, 814
SspDI	GGCGCC	1 cut(s)	909
SspI	AATATT	1 cut(s)	571
SspMI	CTAG	3 cut(s)	242, 510, 657
StuI	AGGCCT	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	654
TaiI	ACGT	3 cut(s)	420, 483, 723
TaqI	TCGA	5 cut(s)	330, 740, 752, 756, 900
TasI	AATT	2 cut(s)	148, 690
TauI	GCSGC	2 cut(s)	348, 629
TfiI	GAWTC	1 cut(s)	444
Tru1I	TTAA	2 cut(s)	567, 926
Tru9I	TTAA	2 cut(s)	567, 926
TscAI	CASTG	1 cut(s)	869
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	4 cut(s)	342, 367, 803, 834
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	7 cut(s)	5, 61, 103, 491, 763, 840, 966
TspGWI	ACGGA	2 cut(s)	702, 831
TspRI	CASTG	1 cut(s)	869
XbaI	TCTAGA	1 cut(s)	656
XspI	CTAG	3 cut(s)	242, 510, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.