Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0017543

Physical Location & Seq

Genomic Coordinates Forward (+)

59496754 .. 59506290

Gene Structure 9537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG334500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGTACATACATCTACAGCTGCATGCAATATTCATGAGTACCCAACAACCCAACAACCCATCTGGCTTCTCCTTCTCTCTTCTCTTGGTTTCTTCATCTTCCTCAGACACTCCATCTCTTTAGCCCGATGGATCTTCATAACTTTTCTCCGACCCGCTAAAGATCTGAAAAGATCGTACGGCTCTTGGGGTTTGATCACTGGTGCCACTGATGGCATAGGCAAGGCCTTTGCCTACCAACTAGCCAAGAAAGGCCTAAACCTTGTTTTAGTCAGCCGCAGCTCCAACAAGCTCGAATCAGTCTCCGAAGAAATTCGATCCCATTTCCCCGATGTGCAGATCAAAACTGTTGCCTTCGACTTCTCACGCGACCAGGGTTTGGTTAAGTTGGTAGAAGAGGAGATCAAGGGATTGGACGTGGGAGTTTTGATAAATAATGTTGGAGTGACTTACCCGGCAGCTAGATACTTTCATGAGGTGGATGAGAAAATGTGGATGGATATTGTTAGGGTGAATTTGGAAGGTACAACAAAGGTTACCGTGGCTGTTGTACCCGGGATGCTTCAAAGGAAGAGAGGTGCCATTGTTAATATTGGGTCTGGGGCAGCCGTTGTGGTTCCTTCCCATCCTCTCTACACCATCTACGCAGCTACCAAAGCGTACCTTGCAATGTTCTCAAGGTGCACTAGTTTGGAATACAAGCAGCAAGGAATTGACATTCAGTGTCAGATTCCCATCTTTGTGGCGACAAAGATGACAAAGTTAAAGGCATCTTCCTTCTTGATTGCATCTCCAGAGACGTATAGCAAAGCAAGCATACGATGCATTGGTTATGAGCATCTGTGTACGCCCTACTGGGGGCACTCAGTGCAGTGGTTCATAGCACGAGGTTTGCCTGATGCATTATTGAATGCGAGCATTTTCCGGTACTTCCTTGGGATGCGAAAGAGAGGCCAATTGAAGGAGTCTCGGATTAAAAAGATGCAGCAACAAGAAAATGCATTGGGAAATCGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016614 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045703 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212

Pfam Domains

Protein Families

adh_short

Protein Analysis

339

Amino Acids

38.03

Weight (kDa)

9.65

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	65 - 255	5.3e-42	short chain dehydrogenase
KR	PF08659	65 - 226	2.5e-08	KR domain
adh_short_C2	PF13561	68 - 254	1.7e-24	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24470
fragaria_vesca	FvH4_4g24990
malus_domestica	MD16G1107400.v1.1
prunus_persica	Prupe.1G239000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0432051
rosa_laevigata	RLG00000006866
rosa_multiflora	Rmu_sc0004965.1_g000024
rosa_roxburghii	Rroxscaffold_5G00373600
rosa_samantha	Rh4BG319000 Rh4CG334500 Rh4DG314200
rosa_wichuraiana	Rw4G027110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	203, 578
AccB7I	CCANNNNNTGG	1 cut(s)	379
AccII	CGCG	1 cut(s)	369
AciI	CCGC	2 cut(s)	156, 277
AclWI	GGATC	2 cut(s)	140, 312
AcsI	RAATTY	2 cut(s)	312, 514
AdeI	CACNNNGTG	1 cut(s)	868
AfaI	GTAC	8 cut(s)	6, 41, 179, 526, 552, 662, 847, 929
AfiI	CCNNNNNNNGG	4 cut(s)	379, 857, 858, 961
AgsI	TTSAA	3 cut(s)	566, 910, 961
AhlI	ACTAGT	1 cut(s)	686
AjiI	CACGTC	1 cut(s)	418
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	5 cut(s)	20, 282, 292, 461, 650
AluI	AGCT	5 cut(s)	20, 282, 292, 461, 650
Alw21I	GWGCWC	1 cut(s)	686
Alw26I	GTCTC	3 cut(s)	307, 791, 972
Alw44I	GTGCAC	1 cut(s)	682
AlwI	GGATC	2 cut(s)	140, 312
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	3 cut(s)	225, 253, 952
ApaLI	GTGCAC	1 cut(s)	682
ApeKI	GCWGC	7 cut(s)	20, 279, 458, 605, 647, 703, 985
ApoI	RAATTY	2 cut(s)	312, 514
Asp700I	GAANNNNTTC	1 cut(s)	312
AsuC2I	CCSGG	3 cut(s)	455, 555, 556
AsuHPI	GGTGA	1 cut(s)	523
AvaI	CYCGRG	1 cut(s)	554
BaeGI	GKGCMC	2 cut(s)	686, 864
BanI	GGYRCC	2 cut(s)	203, 578
BauI	CACGAG	1 cut(s)	885
Bbv12I	GWGCWC	1 cut(s)	686
BbvI	GCAGC	7 cut(s)	7, 291, 470, 617, 659, 715, 997
BccI	CCATC	8 cut(s)	68, 122, 123, 206, 490, 633, 647, 743
BceAI	ACGGC	2 cut(s)	196, 593
BciT130I	CCWGG	1 cut(s)	374
BclI	TGATCA	1 cut(s)	195
BcnI	CCSGG	3 cut(s)	455, 555, 556
BcoDI	GTCTC	3 cut(s)	307, 791, 972
BcuI	ACTAGT	1 cut(s)	686
BfaI	CTAG	3 cut(s)	242, 462, 687
BfmI	CTRYAG	1 cut(s)	15
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	8 cut(s)	21, 277, 280, 459, 606, 648, 704, 986
BlsI	GCNGC	8 cut(s)	22, 278, 281, 460, 607, 649, 705, 987
Bme1390I	CCNGG	4 cut(s)	374, 455, 555, 556
BmeT110I	CYCGRG	1 cut(s)	554
BmgBI	CACGTC	1 cut(s)	418
BmiI	GGNNCC	3 cut(s)	205, 580, 618
BmrFI	CCNGG	4 cut(s)	374, 455, 555, 556
BmrI	ACTGGG	1 cut(s)	865
BmsI	GCATC	8 cut(s)	549, 779, 797, 812, 847, 889, 930, 972
BmuI	ACTGGG	1 cut(s)	865
BpmI	CTGGAG	1 cut(s)	777
BpuEI	CTTGAG	1 cut(s)	661
BpuMI	CCSGG	3 cut(s)	455, 555, 556
BsaBI	GATNNNNATC	1 cut(s)	734
BsaJI	CCNNGG	4 cut(s)	373, 540, 554, 934
BsaWI	WCCGGW	1 cut(s)	924
Bsc4I	CCNNNNNNNGG	4 cut(s)	379, 857, 858, 961
Bse1I	ACTGG	2 cut(s)	205, 860
Bse3DI	GCAATG	1 cut(s)	675
Bse8I	GATNNNNATC	1 cut(s)	734
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	4 cut(s)	373, 540, 554, 934
BseGI	GGATG	5 cut(s)	487, 501, 564, 625, 945
BseJI	GATNNNNATC	1 cut(s)	734
BseLI	CCNNNNNNNGG	4 cut(s)	379, 857, 858, 961
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	2 cut(s)	118, 879
BseNI	ACTGG	2 cut(s)	205, 860
BseRI	GAGGAG	1 cut(s)	413
BseSI	GKGCMC	2 cut(s)	686, 864
BseXI	GCAGC	7 cut(s)	7, 291, 470, 617, 659, 715, 997
BsgI	GTGCAG	2 cut(s)	356, 890
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	3 cut(s)	227, 255, 954
BshNI	GGYRCC	2 cut(s)	203, 578
BsiHKAI	GWGCWC	1 cut(s)	686
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	3 cut(s)	455, 555, 925
BsiWI	CGTACG	1 cut(s)	177
BslI	CCNNNNNNNGG	4 cut(s)	379, 857, 858, 961
BsmAI	GTCTC	3 cut(s)	307, 791, 972
BsmBI	CGTCTC	1 cut(s)	791
BsmI	GAATGC	1 cut(s)	916
BsnI	GGCC	3 cut(s)	227, 255, 954
BsoBI	CYCGRG	1 cut(s)	554
Bsp1286I	GDGCHC	2 cut(s)	686, 864
Bsp143I	GATC	7 cut(s)	132, 163, 173, 195, 317, 339, 402
BspACI	CCGC	2 cut(s)	156, 277
BspANI	GGCC	3 cut(s)	227, 255, 954
BspCNI	CTCAG	2 cut(s)	117, 878
BspFNI	CGCG	1 cut(s)	369
BspHI	TCATGA	2 cut(s)	34, 472
BspLI	GGNNCC	3 cut(s)	205, 580, 618
BspPI	GGATC	2 cut(s)	140, 312
BspT107I	GGYRCC	2 cut(s)	203, 578
BsrDI	GCAATG	1 cut(s)	675
BsrI	ACTGG	2 cut(s)	205, 860
BssECI	CCNNGG	4 cut(s)	373, 540, 554, 934
BssMI	GATC	7 cut(s)	132, 163, 173, 195, 317, 339, 402
BssSI	CACGAG	1 cut(s)	885
BssT1I	CCWWGG	1 cut(s)	934
Bst2BI	CACGAG	1 cut(s)	885
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	2 cut(s)	349, 541
Bst6I	CTCTTC	3 cut(s)	85, 390, 566
BstAPI	GCANNNNNTGC	2 cut(s)	822, 868
BstC8I	GCNNGC	3 cut(s)	25, 814, 916
BstDEI	CTNAG	2 cut(s)	104, 865
BstDSI	CCRYGG	1 cut(s)	540
BstEII	GGTNACC	1 cut(s)	535
BstF5I	GGATG	5 cut(s)	487, 501, 564, 625, 945
BstFNI	CGCG	1 cut(s)	369
BstKTI	GATC	7 cut(s)	135, 166, 176, 198, 320, 342, 405
BstMAI	GTCTC	3 cut(s)	307, 791, 972
BstMBI	GATC	7 cut(s)	132, 163, 173, 195, 317, 339, 402
BstMWI	GCNNNNNNNGC	5 cut(s)	656, 665, 813, 822, 868
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	1 cut(s)	27
BstPI	GGTNACC	1 cut(s)	535
BstSCI	CCNGG	4 cut(s)	372, 453, 553, 554
BstSFI	CTRYAG	1 cut(s)	15
BstSLI	GKGCMC	2 cut(s)	686, 864
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	7 cut(s)	7, 291, 470, 617, 659, 715, 997
BstX2I	RGATCY	2 cut(s)	132, 163
BstXI	CCANNNNNNTGG	1 cut(s)	742
BstYI	RGATCY	2 cut(s)	132, 163
BsuRI	GGCC	3 cut(s)	227, 255, 954
BtgI	CCRYGG	1 cut(s)	540
BtrI	CACGTC	1 cut(s)	418
BtsCI	GGATG	5 cut(s)	487, 501, 564, 625, 945
BtsI	GCAGTG	1 cut(s)	878
BtsIMutI	CAGTG	5 cut(s)	198, 207, 728, 873, 878
Cac8I	GCNNGC	3 cut(s)	25, 814, 916
CciI	TCATGA	2 cut(s)	34, 472
Cfr9I	CCCGGG	1 cut(s)	554
Csp6I	GTAC	8 cut(s)	5, 40, 178, 525, 551, 661, 846, 928
CviAII	CATG	3 cut(s)	24, 35, 473
CviQI	GTAC	8 cut(s)	5, 40, 178, 525, 551, 661, 846, 928
DdeI	CTNAG	2 cut(s)	104, 865
DpnI	GATC	7 cut(s)	134, 165, 175, 197, 319, 341, 404
DpnII	GATC	7 cut(s)	132, 163, 173, 195, 317, 339, 402
DraIII	CACNNNGTG	1 cut(s)	868
Eam1104I	CTCTTC	3 cut(s)	85, 390, 566
EarI	CTCTTC	3 cut(s)	85, 390, 566
Eco130I	CCWWGG	1 cut(s)	934
Eco147I	AGGCCT	2 cut(s)	227, 255
Eco88I	CYCGRG	1 cut(s)	554
Eco91I	GGTNACC	1 cut(s)	535
EcoO65I	GGTNACC	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	934
EcoT22I	ATGCAT	3 cut(s)	827, 904, 1003
ErhI	CCWWGG	1 cut(s)	934
Esp3I	CGTCTC	1 cut(s)	791
FaeI	CATG	3 cut(s)	27, 38, 476
FalI	AAGNNNNNCTT	2 cut(s)	648, 680
FatI	CATG	3 cut(s)	23, 34, 472
FauI	CCCGC	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	195
Fnu4HI	GCNGC	8 cut(s)	21, 277, 280, 459, 606, 648, 704, 986
FokI	GGATG	5 cut(s)	494, 508, 571, 612, 952
Fsp4HI	GCNGC	8 cut(s)	21, 277, 280, 459, 606, 648, 704, 986
FspBI	CTAG	3 cut(s)	242, 462, 687
GluI	GCNGC	8 cut(s)	21, 277, 280, 459, 606, 648, 704, 986
GsuI	CTGGAG	1 cut(s)	777
HaeIII	GGCC	3 cut(s)	227, 255, 954
HapII	CCGG	3 cut(s)	455, 555, 925
Hin1II	CATG	3 cut(s)	27, 38, 476
HinfI	GANTC	3 cut(s)	296, 730, 965
HpaII	CCGG	3 cut(s)	455, 555, 925
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	2 cut(s)	684, 846
Hpy188I	TCNGA	6 cut(s)	107, 152, 168, 307, 729, 972
Hpy188III	TCNNGA	4 cut(s)	35, 473, 781, 794
Hpy8I	GTNNAC	2 cut(s)	684, 846
HpyAV	CCTTC	6 cut(s)	83, 364, 515, 630, 787, 955
HpyCH4III	ACNGT	2 cut(s)	349, 541
HpyCH4IV	ACGT	2 cut(s)	417, 800
HpyF10VI	GCNNNNNNNGC	5 cut(s)	656, 665, 813, 822, 868
HpyF3I	CTNAG	2 cut(s)	104, 865
HpySE526I	ACGT	2 cut(s)	417, 800
Hsp92II	CATG	3 cut(s)	27, 38, 476
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	7 cut(s)	132, 163, 173, 195, 317, 339, 402
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	7 cut(s)	7, 291, 470, 617, 659, 715, 997
LweI	GCATC	8 cut(s)	549, 779, 797, 812, 847, 889, 930, 972
MaeI	CTAG	3 cut(s)	242, 462, 687
MaeII	ACGT	2 cut(s)	417, 800
MaeIII	GTNAC	2 cut(s)	445, 535
MalI	GATC	7 cut(s)	134, 165, 175, 197, 319, 341, 404
MboI	GATC	7 cut(s)	132, 163, 173, 195, 317, 339, 402
MboII	GAAGA	8 cut(s)	72, 85, 91, 127, 320, 407, 583, 765
MfeI	CAATTG	1 cut(s)	956
MflI	RGATCY	2 cut(s)	132, 163
MhlI	GDGCHC	2 cut(s)	686, 864
MluCI	AATT	4 cut(s)	312, 514, 711, 956
MlyI	GAGTC	1 cut(s)	974
MmeI	TCCRAC	3 cut(s)	175, 309, 421
MnlI	CCTC	7 cut(s)	113, 391, 469, 569, 639, 881, 944
Mph1103I	ATGCAT	3 cut(s)	827, 904, 1003
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	5 cut(s)	384, 588, 764, 975, 1018
MslI	CAYNNNNRTG	1 cut(s)	740
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	3 cut(s)	455, 555, 925
MspR9I	CCNGG	4 cut(s)	374, 455, 555, 556
MunI	CAATTG	1 cut(s)	956
Mva1269I	GAATGC	1 cut(s)	916
MvaI	CCWGG	1 cut(s)	374
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	5 cut(s)	656, 665, 813, 822, 868
NciI	CCSGG	3 cut(s)	455, 555, 556
NdeII	GATC	7 cut(s)	132, 163, 173, 195, 317, 339, 402
NlaIII	CATG	3 cut(s)	27, 38, 476
NlaIV	GGNNCC	3 cut(s)	205, 580, 618
NmuCI	GTSAC	1 cut(s)	445
NsiI	ATGCAT	3 cut(s)	827, 904, 1003
NspI	RCATGY	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	27
PagI	TCATGA	2 cut(s)	34, 472
PceI	AGGCCT	2 cut(s)	227, 255
PctI	GAATGC	1 cut(s)	916
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	296, 730
Pfl23II	CGTACG	1 cut(s)	177
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	8 cut(s)	22, 278, 281, 460, 607, 649, 705, 987
PleI	GAGTC	1 cut(s)	973
PpsI	GAGTC	1 cut(s)	973
Psp6I	CCWGG	1 cut(s)	372
PspEI	GGTNACC	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	372
PspLI	CGTACG	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	205, 580, 618
PsuI	RGATCY	2 cut(s)	132, 163
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	8 cut(s)	6, 41, 179, 526, 552, 662, 847, 929
RsaNI	GTAC	8 cut(s)	5, 40, 178, 525, 551, 661, 846, 928
RseI	CAYNNNNRTG	1 cut(s)	740
SaqAI	TTAA	5 cut(s)	384, 588, 764, 975, 1018
SatI	GCNGC	8 cut(s)	21, 277, 280, 459, 606, 648, 704, 986
Sau3AI	GATC	7 cut(s)	132, 163, 173, 195, 317, 339, 402
SchI	GAGTC	1 cut(s)	974
ScrFI	CCNGG	4 cut(s)	374, 455, 555, 556
SduI	GDGCHC	2 cut(s)	686, 864
SfaNI	GCATC	8 cut(s)	549, 779, 797, 812, 847, 889, 930, 972
SfcI	CTRYAG	1 cut(s)	15
SmaI	CCCGGG	1 cut(s)	556
SmiMI	CAYNNNNRTG	1 cut(s)	740
SmlI	CTYRAG	1 cut(s)	676
SmoI	CTYRAG	1 cut(s)	676
SpeI	ACTAGT	1 cut(s)	686
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	4 cut(s)	312, 514, 711, 956
SseBI	AGGCCT	2 cut(s)	227, 255
SsiI	CCGC	2 cut(s)	156, 277
SspI	AATATT	2 cut(s)	31, 592
SspMI	CTAG	3 cut(s)	242, 462, 687
StuI	AGGCCT	2 cut(s)	227, 255
StyD4I	CCNGG	4 cut(s)	372, 453, 553, 554
StyI	CCWWGG	1 cut(s)	934
TaaI	ACNGT	2 cut(s)	349, 541
TaiI	ACGT	2 cut(s)	420, 803
TaqI	TCGA	3 cut(s)	294, 316, 357
TasI	AATT	4 cut(s)	312, 514, 711, 956
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	296, 730
Tru1I	TTAA	5 cut(s)	384, 588, 764, 975, 1018
Tru9I	TTAA	5 cut(s)	384, 588, 764, 975, 1018
TscAI	CASTG	5 cut(s)	205, 214, 728, 873, 878
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	7 cut(s)	20, 279, 458, 605, 647, 703, 985
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	5 cut(s)	23, 85, 127, 461, 868
TspMI	CCCGGG	1 cut(s)	554
TspRI	CASTG	5 cut(s)	205, 214, 728, 873, 878
Van91I	CCANNNNNTGG	1 cut(s)	379
VneI	GTGCAC	1 cut(s)	682
XapI	RAATTY	2 cut(s)	312, 514
XceI	RCATGY	1 cut(s)	27
XmaI	CCCGGG	1 cut(s)	554
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	3 cut(s)	242, 462, 687
Zsp2I	ATGCAT	3 cut(s)	827, 904, 1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.