Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0017543

Physical Location & Seq

Genomic Coordinates Forward (+)

54795883 .. 54799623

Gene Structure 3741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00373600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGTACATACATCTACCGCTGCATGCAATATTCATGAGTACCCAACAACCCAACAACCCATCTGGCTTCTCCTTCTCTCTTCTCTTGGTTGCTTCATCTTCCTCAAACACTCCATCTCTTTAGCCCGATGGATCTTCATAACTTTTCTCCGACCCGCTAAAGATCTGAAAAGATCGTACGGCTCTTGGGGTTTGATCACTGGTGCCACTGATGGCATAGGCAAGGCCTTTGCCTACCAACTAGCCAAGAAAGGCCTAAACCTTGTTCTAGTCAGCCGCAGCTCCAACAAGCTCGAATCAGTCTCCGAAGAAATTCGATCCCATTTCCCTGATGTGCAGATCAAAACTGTTGCCTTCGACTTCTCACGCGACCAGGGTTTGGTTAAGTTGGTAGAAGAGGAGATCAAGGGATTGGACGTGGGAGTTTTGATAAATAATGTTGGAGTGACTTACCCGGCAGCTAGATACTTTCATGAGGTGCATGAGAAAATGTGGATGGATATTGTTAGGGTGAATTTGGAAGGTACAACTAAGGTTAGCATGGCTGTTGTACCAGGGATGCTTCAAAGGAAGAGAGGTGCCATTGTTAATATTGGGTCTGGGGCAGCCGTTGTGGTTCCTTCCCATCCTCTCTACGCCATCTACGCAGCTACCAAAGCTTACGTGGACCAACTCTCTAGATCCCTGTACATGGAATACAAGCAGTACGGAATCGACGTGCAGATTCAGATTCCGTTATATGTCGCAACAAAAATGGTGTCGAAAGTTGCTTCTATCGAGAAGTCGTCATTGTTCATACCACCTGCGGATGCTTATGCAGAAGCAGCAGTCAAGCGCATTGGATATGAAGCACGGTGCACGCCGTTTTGGGCTCACTCGCTTCAGTGGTGGTTCGCGCGGTTGGTCCCTGACTCTCTTCTTGATGCCTGGCGCTTCTATATCGGCTTAAACAGAAGGGGAAGCCAGCTATCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016491 GO:0016614 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045703 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212

Pfam Domains

Protein Families

adh_short

Protein Analysis

325

Amino Acids

36.41

Weight (kDa)

9.4

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	65 - 257	2.6e-42	short chain dehydrogenase
KR	PF08659	65 - 228	2.5e-09	KR domain
adh_short_C2	PF13561	68 - 260	8e-26	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24470
fragaria_vesca	FvH4_4g24990
malus_domestica	MD16G1107400.v1.1
prunus_persica	Prupe.1G239000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0432051
rosa_laevigata	RLG00000006866
rosa_multiflora	Rmu_sc0004965.1_g000024
rosa_roxburghii	Rroxscaffold_5G00373600
rosa_samantha	Rh4BG319000 Rh4CG334500 Rh4DG314200
rosa_wichuraiana	Rw4G027110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	811
Acc36I	ACCTGC	1 cut(s)	811
AccB1I	GGYRCC	2 cut(s)	203, 578
AccB7I	CCANNNNNTGG	1 cut(s)	379
AccII	CGCG	3 cut(s)	369, 896, 898
AciI	CCGC	5 cut(s)	18, 156, 277, 806, 898
AclWI	GGATC	3 cut(s)	140, 312, 675
AcsI	RAATTY	2 cut(s)	312, 514
AcuI	CTGAAG	1 cut(s)	866
AfaI	GTAC	7 cut(s)	6, 41, 179, 526, 552, 689, 707
AfiI	CCNNNNNNNGG	2 cut(s)	379, 691
AgsI	TTSAA	1 cut(s)	566
AjiI	CACGTC	2 cut(s)	418, 718
AjnI	CCWGG	3 cut(s)	372, 553, 926
AluBI	AGCT	7 cut(s)	282, 292, 461, 650, 659, 967, 975
AluI	AGCT	7 cut(s)	282, 292, 461, 650, 659, 967, 975
Alw21I	GWGCWC	1 cut(s)	860
Alw26I	GTCTC	1 cut(s)	307
Alw44I	GTGCAC	1 cut(s)	856
AlwI	GGATC	3 cut(s)	140, 312, 675
AoxI	GGCC	2 cut(s)	225, 253
ApaLI	GTGCAC	1 cut(s)	856
ApeKI	GCWGC	6 cut(s)	20, 279, 458, 605, 647, 824
ApoI	RAATTY	2 cut(s)	312, 514
ArsI	GACNNNNNNTTYG	2 cut(s)	743, 775
Asp700I	GAANNNNTTC	1 cut(s)	312
AspLEI	GCGC	3 cut(s)	837, 898, 933
AspS9I	GGNCC	2 cut(s)	667, 904
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	523
AvaII	GGWCC	2 cut(s)	667, 904
BaeGI	GKGCMC	1 cut(s)	860
BanI	GGYRCC	2 cut(s)	203, 578
BanII	GRGCYC	1 cut(s)	874
Bbv12I	GWGCWC	1 cut(s)	860
BbvI	GCAGC	6 cut(s)	7, 291, 470, 617, 659, 836
BccI	CCATC	7 cut(s)	68, 122, 123, 206, 490, 633, 647
BceAI	ACGGC	3 cut(s)	196, 593, 847
BciT130I	CCWGG	3 cut(s)	374, 555, 928
BclI	TGATCA	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	6 cut(s)	242, 269, 462, 678, 972, 976
BfoI	RGCGCY	1 cut(s)	934
BfuAI	ACCTGC	1 cut(s)	811
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	7 cut(s)	21, 277, 280, 459, 606, 648, 825
BlsI	GCNGC	7 cut(s)	22, 278, 281, 460, 607, 649, 826
Bme1390I	CCNGG	4 cut(s)	374, 455, 555, 928
Bme18I	GGWCC	2 cut(s)	667, 904
BmgBI	CACGTC	2 cut(s)	418, 718
BmgT120I	GGNCC	2 cut(s)	667, 904
BmiI	GGNNCC	4 cut(s)	205, 580, 618, 906
BmrFI	CCNGG	4 cut(s)	374, 455, 555, 928
BmsI	GCATC	3 cut(s)	549, 799, 913
BpuMI	CCSGG	1 cut(s)	455
BsaAI	YACGTR	1 cut(s)	664
BsaJI	CCNNGG	2 cut(s)	373, 554
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 691
Bse1I	ACTGG	1 cut(s)	205
BseBI	CCWGG	3 cut(s)	374, 555, 928
BseDI	CCNNGG	2 cut(s)	373, 554
BseGI	GGATG	4 cut(s)	501, 564, 625, 814
BseLI	CCNNNNNNNGG	2 cut(s)	379, 691
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	1 cut(s)	413
BseSI	GKGCMC	1 cut(s)	860
BseXI	GCAGC	6 cut(s)	7, 291, 470, 617, 659, 836
BsgI	GTGCAG	2 cut(s)	356, 740
Bsh1236I	CGCG	3 cut(s)	369, 896, 898
BshFI	GGCC	2 cut(s)	227, 255
BshNI	GGYRCC	2 cut(s)	203, 578
BsiHKAI	GWGCWC	1 cut(s)	860
BsiSI	CCGG	1 cut(s)	455
BsiWI	CGTACG	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	890
BslI	CCNNNNNNNGG	2 cut(s)	379, 691
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	890
BsnI	GGCC	2 cut(s)	227, 255
Bsp1286I	GDGCHC	2 cut(s)	860, 874
Bsp1407I	TGTACA	1 cut(s)	687
Bsp143I	GATC	8 cut(s)	132, 163, 173, 195, 317, 339, 402, 680
BspACI	CCGC	5 cut(s)	18, 156, 277, 806, 898
BspANI	GGCC	2 cut(s)	227, 255
BspFNI	CGCG	3 cut(s)	369, 896, 898
BspHI	TCATGA	2 cut(s)	34, 472
BspLI	GGNNCC	4 cut(s)	205, 580, 618, 906
BspMI	ACCTGC	1 cut(s)	811
BspPI	GGATC	3 cut(s)	140, 312, 675
BspT107I	GGYRCC	2 cut(s)	203, 578
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	2 cut(s)	373, 554
BssMI	GATC	8 cut(s)	132, 163, 173, 195, 317, 339, 402, 680
Bst2UI	CCWGG	3 cut(s)	374, 555, 928
Bst4CI	ACNGT	2 cut(s)	349, 855
Bst6I	CTCTTC	4 cut(s)	85, 390, 566, 921
BstAUI	TGTACA	1 cut(s)	687
BstBAI	YACGTR	1 cut(s)	664
BstC8I	GCNNGC	3 cut(s)	25, 860, 965
BstDEI	CTNAG	1 cut(s)	531
BstF5I	GGATG	4 cut(s)	501, 564, 625, 814
BstFNI	CGCG	3 cut(s)	369, 896, 898
BstH2I	RGCGCY	1 cut(s)	934
BstHHI	GCGC	3 cut(s)	837, 898, 933
BstKTI	GATC	8 cut(s)	135, 166, 176, 198, 320, 342, 405, 683
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	8 cut(s)	132, 163, 173, 195, 317, 339, 402, 680
BstMWI	GCNNNNNNNGC	3 cut(s)	644, 656, 824
BstNI	CCWGG	3 cut(s)	374, 555, 928
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	4 cut(s)	372, 453, 553, 926
BstSLI	GKGCMC	1 cut(s)	860
BstUI	CGCG	3 cut(s)	369, 896, 898
BstV1I	GCAGC	6 cut(s)	7, 291, 470, 617, 659, 836
BstX2I	RGATCY	3 cut(s)	132, 163, 680
BstYI	RGATCY	3 cut(s)	132, 163, 680
BsuRI	GGCC	2 cut(s)	227, 255
BtrI	CACGTC	2 cut(s)	418, 718
BtsCI	GGATG	4 cut(s)	501, 564, 625, 814
BtsIMutI	CAGTG	3 cut(s)	198, 207, 890
BveI	ACCTGC	1 cut(s)	811
Cac8I	GCNNGC	3 cut(s)	25, 860, 965
CciI	TCATGA	2 cut(s)	34, 472
CfoI	GCGC	3 cut(s)	837, 898, 933
Cfr13I	GGNCC	2 cut(s)	667, 904
Csp6I	GTAC	7 cut(s)	5, 40, 178, 525, 551, 688, 706
CviAII	CATG	6 cut(s)	24, 35, 473, 482, 541, 691
CviQI	GTAC	7 cut(s)	5, 40, 178, 525, 551, 688, 706
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	8 cut(s)	134, 165, 175, 197, 319, 341, 404, 682
DpnII	GATC	8 cut(s)	132, 163, 173, 195, 317, 339, 402, 680
Eam1104I	CTCTTC	4 cut(s)	85, 390, 566, 921
EarI	CTCTTC	4 cut(s)	85, 390, 566, 921
Eco147I	AGGCCT	2 cut(s)	227, 255
Eco24I	GRGCYC	1 cut(s)	874
Eco47I	GGWCC	2 cut(s)	667, 904
Eco57I	CTGAAG	1 cut(s)	866
EcoRII	CCWGG	3 cut(s)	372, 553, 926
EcoT38I	GRGCYC	1 cut(s)	874
FaeI	CATG	6 cut(s)	27, 38, 476, 485, 544, 694
FaqI	GGGAC	1 cut(s)	890
FatI	CATG	6 cut(s)	23, 34, 472, 481, 540, 690
FauI	CCCGC	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	195
Fnu4HI	GCNGC	7 cut(s)	21, 277, 280, 459, 606, 648, 825
FokI	GGATG	4 cut(s)	508, 571, 612, 821
FriOI	GRGCYC	1 cut(s)	874
Fsp4HI	GCNGC	7 cut(s)	21, 277, 280, 459, 606, 648, 825
FspBI	CTAG	6 cut(s)	242, 269, 462, 678, 972, 976
GlaI	GCGC	3 cut(s)	836, 897, 932
GluI	GCNGC	7 cut(s)	21, 277, 280, 459, 606, 648, 825
HaeII	RGCGCY	1 cut(s)	934
HaeIII	GGCC	2 cut(s)	227, 255
HapII	CCGG	1 cut(s)	455
HhaI	GCGC	3 cut(s)	837, 898, 933
Hin1II	CATG	6 cut(s)	27, 38, 476, 485, 544, 694
Hin6I	GCGC	3 cut(s)	835, 896, 931
HinP1I	GCGC	3 cut(s)	835, 896, 931
HindIII	AAGCTT	1 cut(s)	657
HinfI	GANTC	5 cut(s)	296, 711, 724, 730, 911
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	2 cut(s)	667, 858
Hpy188I	TCNGA	4 cut(s)	152, 168, 307, 729
Hpy188III	TCNNGA	5 cut(s)	35, 473, 678, 778, 920
Hpy8I	GTNNAC	2 cut(s)	667, 858
Hpy99I	CGWCG	1 cut(s)	719
HpyAV	CCTTC	5 cut(s)	83, 364, 515, 630, 948
HpyCH4III	ACNGT	2 cut(s)	349, 855
HpyCH4IV	ACGT	3 cut(s)	417, 663, 717
HpyCH4V	TGCA	7 cut(s)	23, 27, 337, 481, 721, 818, 858
HpyF10VI	GCNNNNNNNGC	3 cut(s)	644, 656, 824
HpyF3I	CTNAG	1 cut(s)	531
HpySE526I	ACGT	3 cut(s)	417, 663, 717
Hsp92II	CATG	6 cut(s)	27, 38, 476, 485, 544, 694
HspAI	GCGC	3 cut(s)	835, 896, 931
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	8 cut(s)	132, 163, 173, 195, 317, 339, 402, 680
LmnI	GCTCC	1 cut(s)	287
Lsp1109I	GCAGC	6 cut(s)	7, 291, 470, 617, 659, 836
LweI	GCATC	3 cut(s)	549, 799, 913
MaeI	CTAG	6 cut(s)	242, 269, 462, 678, 972, 976
MaeII	ACGT	3 cut(s)	417, 663, 717
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	8 cut(s)	134, 165, 175, 197, 319, 341, 404, 682
MboI	GATC	8 cut(s)	132, 163, 173, 195, 317, 339, 402, 680
MboII	GAAGA	7 cut(s)	72, 91, 127, 320, 407, 583, 908
MflI	RGATCY	3 cut(s)	132, 163, 680
MhlI	GDGCHC	2 cut(s)	860, 874
MluCI	AATT	2 cut(s)	312, 514
MlyI	GAGTC	1 cut(s)	905
MmeI	TCCRAC	3 cut(s)	175, 309, 421
MnlI	CCTC	5 cut(s)	113, 391, 469, 569, 639
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	3 cut(s)	384, 588, 947
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	4 cut(s)	374, 455, 555, 928
MvaI	CCWGG	3 cut(s)	374, 555, 928
MvnI	CGCG	3 cut(s)	369, 896, 898
MwoI	GCNNNNNNNGC	3 cut(s)	644, 656, 824
NciI	CCSGG	1 cut(s)	455
NdeII	GATC	8 cut(s)	132, 163, 173, 195, 317, 339, 402, 680
NlaIII	CATG	6 cut(s)	27, 38, 476, 485, 544, 694
NlaIV	GGNNCC	4 cut(s)	205, 580, 618, 906
NmuCI	GTSAC	1 cut(s)	445
NspI	RCATGY	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	27
PagI	TCATGA	2 cut(s)	34, 472
PaqCI	CACCTGC	1 cut(s)	811
PceI	AGGCCT	2 cut(s)	227, 255
PcsI	WCGNNNNNNNCGW	1 cut(s)	714
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	4 cut(s)	296, 711, 724, 730
Pfl23II	CGTACG	1 cut(s)	177
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	7 cut(s)	22, 278, 281, 460, 607, 649, 826
PleI	GAGTC	1 cut(s)	905
PpsI	GAGTC	1 cut(s)	905
Ppu21I	YACGTR	1 cut(s)	664
Psp6I	CCWGG	3 cut(s)	372, 553, 926
PspGI	CCWGG	3 cut(s)	372, 553, 926
PspLI	CGTACG	1 cut(s)	177
PspN4I	GGNNCC	4 cut(s)	205, 580, 618, 906
PspPI	GGNCC	2 cut(s)	667, 904
PsuI	RGATCY	3 cut(s)	132, 163, 680
RsaI	GTAC	7 cut(s)	6, 41, 179, 526, 552, 689, 707
RsaNI	GTAC	7 cut(s)	5, 40, 178, 525, 551, 688, 706
SaqAI	TTAA	3 cut(s)	384, 588, 947
SatI	GCNGC	7 cut(s)	21, 277, 280, 459, 606, 648, 825
Sau3AI	GATC	8 cut(s)	132, 163, 173, 195, 317, 339, 402, 680
Sau96I	GGNCC	2 cut(s)	667, 904
SchI	GAGTC	1 cut(s)	905
ScrFI	CCNGG	4 cut(s)	374, 455, 555, 928
SduI	GDGCHC	2 cut(s)	860, 874
SfaNI	GCATC	3 cut(s)	549, 799, 913
SinI	GGWCC	2 cut(s)	667, 904
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	2 cut(s)	312, 514
SseBI	AGGCCT	2 cut(s)	227, 255
SsiI	CCGC	5 cut(s)	18, 156, 277, 806, 898
SspI	AATATT	2 cut(s)	31, 592
SspMI	CTAG	6 cut(s)	242, 269, 462, 678, 972, 976
StuI	AGGCCT	2 cut(s)	227, 255
StyD4I	CCNGG	4 cut(s)	372, 453, 553, 926
TaaI	ACNGT	2 cut(s)	349, 855
TaiI	ACGT	3 cut(s)	420, 666, 720
TaqI	TCGA	6 cut(s)	294, 316, 357, 714, 761, 777
TasI	AATT	2 cut(s)	312, 514
TatI	WGTACW	1 cut(s)	687
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	4 cut(s)	296, 711, 724, 730
Tru1I	TTAA	3 cut(s)	384, 588, 947
Tru9I	TTAA	3 cut(s)	384, 588, 947
TscAI	CASTG	3 cut(s)	205, 214, 890
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	6 cut(s)	20, 279, 458, 605, 647, 824
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	6 cut(s)	23, 85, 127, 461, 784, 861
TspGWI	ACGGA	2 cut(s)	723, 723
TspRI	CASTG	3 cut(s)	205, 214, 890
Van91I	CCANNNNNTGG	1 cut(s)	379
VneI	GTGCAC	1 cut(s)	856
VpaK11BI	GGWCC	2 cut(s)	667, 904
XapI	RAATTY	2 cut(s)	312, 514
XbaI	TCTAGA	1 cut(s)	677
XceI	RCATGY	1 cut(s)	27
XcmI	CCANNNNNNNNNTGG	1 cut(s)	661
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	6 cut(s)	242, 269, 462, 678, 972, 976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.