Prupe.1G239000_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017543
Physical Location & Seq
Forward (+)
25346804 .. 25349612
2809 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G239000.1

Sequence Viewer

Length: 966 bp
ATGGTACCTTCTTCTTCATGCATTCATCACCTAACAAACCAACCCATCTGGCTTCTCCTTCTCTCATCTCTAGGTTTCTTCATCTTTCTCAAACAAGCCACCTCTCTGGCCAACTGGGTTTTCATCGTCCTCCTCAGACCCCCTAAAAACCTCAAAAGATACGGCTCATGGGCTATGGTCACCGGCGCCACCGATGGCATAGGAAAAGCCTTCGCCTACCAACTTGCCCAACAAGGCCTCAACTTAATCCTAGTCAGCCGCAACTCGGCCAAGCTCAAATCAGTCTCGAAAGAAATCCAAGCAAATTATCCCACCACCCAAATAAAAACCATCGCCTTCGACTTCTCCGTCGGTAGCTTGGGTGGTATGAATGAGCTGCTAGAGGAGGAGATCAGAGGGCTGGACGTCGGCGTTTTGATAAACAACGTTGGGGTGACGTACCCAAGTGCTAGATTTTTGCATGAGGTGGATGAGCAAGTGTGGACGAATGTGGTAAAGGTGAATGTGGAGGGCACAACCAGAGTGACCATGGCGGTTTTACGAGGAATGGTTGAGAGGAAGAGAGGTGCCGTTGTCAATATTGGGTCCGGCGCAGGCATTGTCGTGCCCTCACATCCTCTCTTCACCGTCTACGCCGCTACCAAAGCTTATGTGGACCAATTGTCAAGATCCCTCCACGTGGAATATAAGCGTTATGGCATTGATGTGCAGAGTCAGGTGCCTTTATACGTAGCAACAAAGCTGGCGTCAAAGGTGGCATCCATCGAGAGGTCATCTCTATTCATACCCACGCCACATGCGTATGCCAAAGCAGCGATTCGGCGCATTGGGTATGAGGCCCGCTGCACACCGTTTTGGGCTCACTCTCTTCAGTGGTGCTTGGGGAGCTTGGTCCCTGAGTCTCTTCTTGACGCTTGGCGCCTCTCTATTGGCTTGAAAAGAAGGGCCAAGCTACACCATGCATAA

Protein Analysis

322

Amino Acids

35.47

Weight (kDa)

9.83

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017543)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24470
fragaria_vesca FvH4_4g24990
malus_domestica MD16G1107400.v1.1
prunus_persica Prupe.1G239000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0432051
rosa_laevigata RLG00000006866
rosa_multiflora Rmu_sc0004965.1_g000024
rosa_roxburghii Rroxscaffold_5G00373600
rosa_samantha Rh4BG319000 Rh4CG334500 Rh4DG314200
rosa_wichuraiana Rw4G027110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 347
AatII GACGTC 1 cut(s) 408
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 5 cut(s) 4, 185, 566, 718, 918
AccI GTMKAC 1 cut(s) 630
AciI CCGC 4 cut(s) 259, 533, 636, 841
AclI AACGTT 1 cut(s) 426
AclWI GGATC 1 cut(s) 663
AcoI YGGCCR 2 cut(s) 108, 267
AcuI CTGAAG 1 cut(s) 854
AcvI CACGTG 1 cut(s) 679
AcyI GRCGYC 4 cut(s) 186, 405, 746, 919
AfaI GTAC 2 cut(s) 6, 440
AfiI CCNNNNNNNGG 3 cut(s) 265, 679, 768
AgsI TTSAA 1 cut(s) 937
AhdI GACNNNNNGTC 1 cut(s) 661
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 7 cut(s) 274, 357, 376, 647, 742, 888, 952
AluI AGCT 7 cut(s) 274, 357, 376, 647, 742, 888, 952
Alw26I GTCTC 2 cut(s) 289, 906
AlwI GGATC 1 cut(s) 663
AoxI GGCC 5 cut(s) 108, 235, 267, 837, 945
ApeKI GCWGC 3 cut(s) 376, 812, 843
ArsI GACNNNNNNTTYG 2 cut(s) 731, 763
Asp718I GGTACC 1 cut(s) 4
AspLEI GCGC 4 cut(s) 188, 593, 825, 921
AspS9I GGNCC 5 cut(s) 585, 655, 838, 892, 945
AsuHPI GGTGA 5 cut(s) 20, 172, 445, 511, 616
AvaII GGWCC 3 cut(s) 585, 655, 892
BaeGI GKGCMC 2 cut(s) 515, 609
BalI TGGCCA 1 cut(s) 110
BanI GGYRCC 5 cut(s) 4, 185, 566, 718, 918
BanII GRGCYC 1 cut(s) 862
BbrPI CACGTG 1 cut(s) 679
BbvI GCAGC 3 cut(s) 363, 824, 830
BccI CCATC 4 cut(s) 53, 188, 338, 770
BceAI ACGGC 2 cut(s) 178, 554
BcoDI GTCTC 2 cut(s) 289, 906
BfaI CTAG 4 cut(s) 71, 251, 380, 450
BfoI RGCGCY 2 cut(s) 189, 922
BisI GCNGC 5 cut(s) 259, 377, 636, 813, 844
BlsI GCNGC 5 cut(s) 260, 378, 637, 814, 845
Bme18I GGWCC 3 cut(s) 585, 655, 892
BmeRI GACNNNNNGTC 1 cut(s) 661
BmgT120I GGNCC 5 cut(s) 585, 655, 838, 892, 945
BmiI GGNNCC 7 cut(s) 6, 187, 568, 586, 720, 894, 920
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 1 cut(s) 767
BmuI ACTGGG 1 cut(s) 124
BplI GAGNNNNNCTC 2 cut(s) 760, 792
BsaAI YACGTR 2 cut(s) 679, 730
BsaHI GRCGYC 4 cut(s) 186, 405, 746, 919
BsaJI CCNNGG 1 cut(s) 528
Bsc4I CCNNNNNNNGG 3 cut(s) 265, 679, 768
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 528
BseGI GGATG 3 cut(s) 475, 613, 758
BseLI CCNNNNNNNGG 3 cut(s) 265, 679, 768
BseMII CTCAG 2 cut(s) 148, 888
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 3 cut(s) 122, 398, 401
BseSI GKGCMC 2 cut(s) 515, 609
BseXI GCAGC 3 cut(s) 363, 824, 830
BsgI GTGCAG 2 cut(s) 728, 829
BshFI GGCC 5 cut(s) 110, 237, 269, 839, 947
BshNI GGYRCC 5 cut(s) 4, 185, 566, 718, 918
BsiSI CCGG 2 cut(s) 183, 588
BslFI GGGAC 1 cut(s) 878
BslI CCNNNNNNNGG 3 cut(s) 265, 679, 768
BsmAI GTCTC 2 cut(s) 289, 906
BsmFI GGGAC 1 cut(s) 878
BsmI GAATGC 1 cut(s) 21
BsnI GGCC 5 cut(s) 110, 237, 269, 839, 947
Bsp1286I GDGCHC 3 cut(s) 515, 609, 862
Bsp143I GATC 2 cut(s) 390, 668
Bsp19I CCATGG 1 cut(s) 528
BspACI CCGC 4 cut(s) 259, 533, 636, 841
BspANI GGCC 5 cut(s) 110, 237, 269, 839, 947
BspCNI CTCAG 2 cut(s) 147, 889
BspLI GGNNCC 7 cut(s) 6, 187, 568, 586, 720, 894, 920
BspPI GGATC 1 cut(s) 663
BspT107I GGYRCC 5 cut(s) 4, 185, 566, 718, 918
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 528
BssMI GATC 2 cut(s) 390, 668
BssNI GRCGYC 4 cut(s) 186, 405, 746, 919
BssT1I CCWWGG 1 cut(s) 528
Bst4CI ACNGT 2 cut(s) 628, 852
Bst6I CTCTTC 4 cut(s) 554, 626, 873, 909
BstACI GRCGYC 4 cut(s) 186, 405, 746, 919
BstBAI YACGTR 2 cut(s) 679, 730
BstC8I GCNNGC 3 cut(s) 595, 744, 841
BstDEI CTNAG 2 cut(s) 134, 897
BstDSI CCRYGG 1 cut(s) 528
BstEII GGTNACC 1 cut(s) 178
BstF5I GGATG 3 cut(s) 475, 613, 758
BstH2I RGCGCY 2 cut(s) 189, 922
BstHHI GCGC 4 cut(s) 188, 593, 825, 921
BstKTI GATC 2 cut(s) 393, 671
BstMAI GTCTC 2 cut(s) 289, 906
BstMBI GATC 2 cut(s) 390, 668
BstMWI GCNNNNNNNGC 3 cut(s) 644, 812, 885
BstNSI RCATGY 1 cut(s) 800
BstPI GGTNACC 1 cut(s) 178
BstSLI GKGCMC 2 cut(s) 515, 609
BstSNI TACGTA 1 cut(s) 730
BstV1I GCAGC 3 cut(s) 363, 824, 830
BstX2I RGATCY 1 cut(s) 668
BstXI CCANNNNNNTGG 1 cut(s) 106
BstYI RGATCY 1 cut(s) 668
BsuRI GGCC 5 cut(s) 110, 237, 269, 839, 947
BtgI CCRYGG 1 cut(s) 528
BtgZI GCGATG 1 cut(s) 316
BtsCI GGATG 3 cut(s) 475, 613, 758
BtsIMutI CAGTG 1 cut(s) 878
Cac8I GCNNGC 3 cut(s) 595, 744, 841
CfoI GCGC 4 cut(s) 188, 593, 825, 921
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 5 cut(s) 585, 655, 838, 892, 945
CseI GACGC 2 cut(s) 735, 920
Csp6I GTAC 2 cut(s) 5, 439
CviAII CATG 6 cut(s) 18, 168, 461, 529, 797, 959
CviQI GTAC 2 cut(s) 5, 439
DdeI CTNAG 2 cut(s) 134, 897
DinI GGCGCC 2 cut(s) 187, 920
DpnI GATC 2 cut(s) 392, 670
DpnII GATC 2 cut(s) 390, 668
DrdI GACNNNNNNGTC 1 cut(s) 347
DriI GACNNNNNGTC 1 cut(s) 661
DseDI GACNNNNNNGTC 1 cut(s) 347
EaeI YGGCCR 2 cut(s) 108, 267
Eam1104I CTCTTC 4 cut(s) 554, 626, 873, 909
Eam1105I GACNNNNNGTC 1 cut(s) 661
EarI CTCTTC 4 cut(s) 554, 626, 873, 909
Eco105I TACGTA 1 cut(s) 730
Eco130I CCWWGG 1 cut(s) 528
Eco147I AGGCCT 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 862
Eco47I GGWCC 3 cut(s) 585, 655, 892
Eco57I CTGAAG 1 cut(s) 854
Eco72I CACGTG 1 cut(s) 679
Eco91I GGTNACC 1 cut(s) 178
EcoO65I GGTNACC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 528
EcoT22I ATGCAT 2 cut(s) 23, 964
EcoT38I GRGCYC 1 cut(s) 862
EgeI GGCGCC 2 cut(s) 187, 920
EheI GGCGCC 2 cut(s) 187, 920
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 6 cut(s) 21, 171, 464, 532, 800, 962
FaqI GGGAC 1 cut(s) 878
FatI CATG 6 cut(s) 17, 167, 460, 528, 796, 958
FauI CCCGC 1 cut(s) 848
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 5 cut(s) 259, 377, 636, 813, 844
FokI GGATG 3 cut(s) 482, 600, 745
FriOI GRGCYC 1 cut(s) 862
Fsp4HI GCNGC 5 cut(s) 259, 377, 636, 813, 844
FspBI CTAG 4 cut(s) 71, 251, 380, 450
GlaI GCGC 4 cut(s) 187, 592, 824, 920
GluI GCNGC 5 cut(s) 259, 377, 636, 813, 844
HaeII RGCGCY 2 cut(s) 189, 922
HaeIII GGCC 5 cut(s) 110, 237, 269, 839, 947
HapII CCGG 2 cut(s) 183, 588
HgaI GACGC 2 cut(s) 735, 920
HhaI GCGC 4 cut(s) 188, 593, 825, 921
Hin1I GRCGYC 4 cut(s) 186, 405, 746, 919
Hin1II CATG 6 cut(s) 21, 171, 464, 532, 800, 962
Hin6I GCGC 4 cut(s) 186, 591, 823, 919
HinP1I GCGC 4 cut(s) 186, 591, 823, 919
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 3 cut(s) 712, 817, 899
HpaII CCGG 2 cut(s) 183, 588
HphI GGTGA 5 cut(s) 20, 172, 445, 511, 616
Hpy166II GTNNAC 3 cut(s) 483, 631, 655
Hpy188I TCNGA 2 cut(s) 137, 395
Hpy188III TCNNGA 4 cut(s) 286, 666, 766, 908
Hpy8I GTNNAC 3 cut(s) 483, 631, 655
Hpy99I CGWCG 2 cut(s) 353, 410
HpyAV CCTTC 5 cut(s) 18, 68, 220, 346, 936
HpyCH4III ACNGT 2 cut(s) 628, 852
HpyCH4IV ACGT 5 cut(s) 405, 426, 437, 678, 729
HpyCH4V TGCA 5 cut(s) 21, 460, 709, 846, 962
HpyF10VI GCNNNNNNNGC 3 cut(s) 644, 812, 885
HpyF3I CTNAG 2 cut(s) 134, 897
HpySE526I ACGT 5 cut(s) 405, 426, 437, 678, 729
Hsp92I GRCGYC 4 cut(s) 186, 405, 746, 919
Hsp92II CATG 6 cut(s) 21, 171, 464, 532, 800, 962
HspAI GCGC 4 cut(s) 186, 591, 823, 919
KasI GGCGCC 2 cut(s) 185, 918
KpnI GGTACC 1 cut(s) 8
Kzo9I GATC 2 cut(s) 390, 668
LmnI GCTCC 1 cut(s) 885
Lsp1109I GCAGC 3 cut(s) 363, 824, 830
LweI GCATC 1 cut(s) 767
MaeI CTAG 4 cut(s) 71, 251, 380, 450
MaeII ACGT 5 cut(s) 405, 426, 437, 678, 729
MaeIII GTNAC 3 cut(s) 178, 433, 523
MalI GATC 2 cut(s) 392, 670
MboI GATC 2 cut(s) 390, 668
MboII GAAGA 7 cut(s) 3, 6, 70, 571, 613, 860, 896
MfeI CAATTG 1 cut(s) 659
MflI RGATCY 1 cut(s) 668
MhlI GDGCHC 3 cut(s) 515, 609, 862
MlsI TGGCCA 1 cut(s) 110
MluCI AATT 2 cut(s) 304, 659
MluNI TGGCCA 1 cut(s) 110
Mly113I GGCGCC 2 cut(s) 186, 919
MlyI GAGTC 2 cut(s) 721, 908
Mox20I TGGCCA 1 cut(s) 110
Mph1103I ATGCAT 2 cut(s) 23, 964
MscI TGGCCA 1 cut(s) 110
MseI TTAA 1 cut(s) 245
MslI CAYNNNNRTG 3 cut(s) 602, 704, 801
Msp20I TGGCCA 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 843
MspI CCGG 2 cut(s) 183, 588
MunI CAATTG 1 cut(s) 659
Mva1269I GAATGC 1 cut(s) 21
MwoI GCNNNNNNNGC 3 cut(s) 644, 812, 885
NarI GGCGCC 2 cut(s) 186, 919
NcoI CCATGG 1 cut(s) 528
NdeII GATC 2 cut(s) 390, 668
NlaIII CATG 6 cut(s) 21, 171, 464, 532, 800, 962
NlaIV GGNNCC 7 cut(s) 6, 187, 568, 586, 720, 894, 920
NmeAIII GCCGAG 1 cut(s) 245
NmuCI GTSAC 3 cut(s) 178, 433, 523
NsiI ATGCAT 2 cut(s) 23, 964
NspI RCATGY 1 cut(s) 800
PceI AGGCCT 1 cut(s) 237
PcsI WCGNNNNNNNCGW 2 cut(s) 345, 797
PctI GAATGC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 817
PkrI GCNGC 5 cut(s) 260, 378, 637, 814, 845
PleI GAGTC 2 cut(s) 720, 907
PluTI GGCGCC 2 cut(s) 189, 922
PmaCI CACGTG 1 cut(s) 679
PmlI CACGTG 1 cut(s) 679
PpsI GAGTC 2 cut(s) 720, 907
Ppu21I YACGTR 2 cut(s) 679, 730
Psp1406I AACGTT 1 cut(s) 426
PspCI CACGTG 1 cut(s) 679
PspEI GGTNACC 1 cut(s) 178
PspN4I GGNNCC 7 cut(s) 6, 187, 568, 586, 720, 894, 920
PspPI GGNCC 5 cut(s) 585, 655, 838, 892, 945
PsuI RGATCY 1 cut(s) 668
RsaI GTAC 2 cut(s) 6, 440
RsaNI GTAC 2 cut(s) 5, 439
RseI CAYNNNNRTG 3 cut(s) 602, 704, 801
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 5 cut(s) 259, 377, 636, 813, 844
Sau3AI GATC 2 cut(s) 390, 668
Sau96I GGNCC 5 cut(s) 585, 655, 838, 892, 945
SchI GAGTC 2 cut(s) 721, 908
SduI GDGCHC 3 cut(s) 515, 609, 862
SfaNI GCATC 1 cut(s) 767
SfoI GGCGCC 2 cut(s) 187, 920
SgrAI CRCCGGYG 1 cut(s) 182
SinI GGWCC 3 cut(s) 585, 655, 892
SmiMI CAYNNNNRTG 3 cut(s) 602, 704, 801
SnaBI TACGTA 1 cut(s) 730
Sse9I AATT 2 cut(s) 304, 659
SseBI AGGCCT 1 cut(s) 237
SsiI CCGC 4 cut(s) 259, 533, 636, 841
SspDI GGCGCC 2 cut(s) 185, 918
SspI AATATT 1 cut(s) 580
SspMI CTAG 4 cut(s) 71, 251, 380, 450
StuI AGGCCT 1 cut(s) 237
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 2 cut(s) 628, 852
TaiI ACGT 5 cut(s) 408, 429, 440, 681, 732
TaqI TCGA 3 cut(s) 287, 339, 765
TasI AATT 2 cut(s) 304, 659
TauI GCSGC 2 cut(s) 261, 638
TfiI GAWTC 1 cut(s) 817
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 1 cut(s) 878
TseFI GTSAC 3 cut(s) 178, 433, 523
TseI GCWGC 3 cut(s) 376, 812, 843
Tsp45I GTSAC 3 cut(s) 178, 433, 523
TspDTI ATGAA 6 cut(s) 6, 14, 70, 112, 383, 772
TspGWI ACGGA 1 cut(s) 337
TspRI CASTG 1 cut(s) 878
VpaK11BI GGWCC 3 cut(s) 585, 655, 892
XceI RCATGY 1 cut(s) 800
XcmI CCANNNNNNNNNTGG 2 cut(s) 526, 649
XmiI GTMKAC 1 cut(s) 630
XspI CTAG 4 cut(s) 71, 251, 380, 450
ZraI GACGTC 1 cut(s) 406
Zsp2I ATGCAT 2 cut(s) 23, 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.