Rubisco LSMT substrate-binding
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G24610 |
| fragaria_vesca | FvH4_4g33660 |
| malus_domestica | MD13G1020900.v1.1 MD16G1019300.v1.1 |
| prunus_persica | Prupe.1G332800_v2.0.a1 |
| pyrus_communis | pycom13g01770 pycom16g01730 |
| rosa_chinensis | RchiOBHm_Chr4g0443121 |
| rosa_laevigata | RLG00000005952 |
| rosa_multiflora | Rmu_sc0007968.1_g000013 |
| rosa_roxburghii | Rroxscaffold_5G00383740 |
| rosa_rugosa | Rorug04G0344600 |
| rosa_samantha | Rh4BG410500 Rh4CG426000 Rh4DG405500 |
| rosa_wichuraiana | Rw4G034390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 88, 215 |
| AccII | CGCG | 2 cut(s) | 68, 149 |
| AciI | CCGC | 8 cut(s) | 66, 132, 149, 300, 947, 959, 1100, 1176 |
| AclWI | GGATC | 4 cut(s) | 125, 682, 755, 818 |
| AcoI | YGGCCR | 4 cut(s) | 3, 63, 392, 580 |
| AcsI | RAATTY | 2 cut(s) | 980, 1027 |
| AcuI | CTGAAG | 3 cut(s) | 342, 828, 1073 |
| AcyI | GRCGYC | 1 cut(s) | 89 |
| AfaI | GTAC | 3 cut(s) | 541, 1222, 1334 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 578, 609, 1085 |
| AflIII | ACRYGT | 1 cut(s) | 56 |
| AgsI | TTSAA | 5 cut(s) | 548, 630, 668, 733, 755 |
| AjnI | CCWGG | 2 cut(s) | 211, 486 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 970, 1002 |
| Alw26I | GTCTC | 4 cut(s) | 75, 161, 797, 1406 |
| AlwI | GGATC | 4 cut(s) | 125, 682, 755, 818 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 806 |
| AoxI | GGCC | 6 cut(s) | 3, 63, 306, 392, 580, 1069 |
| ApeKI | GCWGC | 3 cut(s) | 35, 1012, 1424 |
| ApoI | RAATTY | 2 cut(s) | 980, 1027 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 866, 898 |
| AspA2I | CCTAGG | 1 cut(s) | 604 |
| AspLEI | GCGC | 1 cut(s) | 91 |
| AspS9I | GGNCC | 2 cut(s) | 307, 1070 |
| AsuC2I | CCSGG | 3 cut(s) | 413, 444, 1036 |
| AsuHPI | GGTGA | 4 cut(s) | 134, 981, 1136, 1372 |
| AsuII | TTCGAA | 2 cut(s) | 11, 258 |
| AsuNHI | GCTAGC | 1 cut(s) | 950 |
| AvrII | CCTAGG | 1 cut(s) | 604 |
| BalI | TGGCCA | 3 cut(s) | 5, 394, 582 |
| BanI | GGYRCC | 2 cut(s) | 88, 215 |
| BbvI | GCAGC | 3 cut(s) | 47, 999, 1411 |
| BceAI | ACGGC | 4 cut(s) | 61, 489, 1163, 1196 |
| BciT130I | CCWGG | 2 cut(s) | 213, 488 |
| BciVI | GTATCC | 1 cut(s) | 1104 |
| BclI | TGATCA | 2 cut(s) | 565, 1356 |
| BcnI | CCSGG | 3 cut(s) | 413, 444, 1036 |
| BcoDI | GTCTC | 4 cut(s) | 75, 161, 797, 1406 |
| BfaI | CTAG | 5 cut(s) | 32, 561, 605, 633, 951 |
| BfoI | RGCGCY | 1 cut(s) | 92 |
| BfuI | GTATCC | 1 cut(s) | 1104 |
| BisI | GCNGC | 8 cut(s) | 36, 66, 133, 948, 960, 1013, 1101, 1425 |
| BlnI | CCTAGG | 1 cut(s) | 604 |
| BlsI | GCNGC | 8 cut(s) | 37, 67, 134, 949, 961, 1014, 1102, 1426 |
| Bme1390I | CCNGG | 5 cut(s) | 213, 413, 444, 488, 1036 |
| BmgT120I | GGNCC | 2 cut(s) | 307, 1070 |
| BmiI | GGNNCC | 2 cut(s) | 90, 217 |
| BmrFI | CCNGG | 5 cut(s) | 213, 413, 444, 488, 1036 |
| BmrI | ACTGGG | 1 cut(s) | 1015 |
| BmsI | GCATC | 4 cut(s) | 491, 605, 687, 934 |
| BmtI | GCTAGC | 1 cut(s) | 954 |
| BmuI | ACTGGG | 1 cut(s) | 1015 |
| BoxI | GACNNNNGTC | 1 cut(s) | 809 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 191, 223 |
| BpmI | CTGGAG | 1 cut(s) | 195 |
| Bpu14I | TTCGAA | 2 cut(s) | 11, 258 |
| BpuEI | CTTGAG | 1 cut(s) | 536 |
| BpuMI | CCSGG | 3 cut(s) | 413, 444, 1036 |
| BsaHI | GRCGYC | 1 cut(s) | 89 |
| BsaJI | CCNNGG | 3 cut(s) | 604, 998, 1035 |
| BsaWI | WCCGGW | 1 cut(s) | 111 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 578, 609, 1085 |
| Bse1I | ACTGG | 3 cut(s) | 1021, 1079, 1134 |
| Bse3DI | GCAATG | 1 cut(s) | 342 |
| BseBI | CCWGG | 2 cut(s) | 213, 488 |
| BseDI | CCNNGG | 3 cut(s) | 604, 998, 1035 |
| BseGI | GGATG | 4 cut(s) | 94, 108, 568, 949 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 578, 609, 1085 |
| BseMI | GCAATG | 1 cut(s) | 342 |
| BseMII | CTCAG | 2 cut(s) | 176, 1167 |
| BseNI | ACTGG | 3 cut(s) | 1021, 1079, 1134 |
| BseRI | GAGGAG | 3 cut(s) | 228, 284, 465 |
| BseXI | GCAGC | 3 cut(s) | 47, 999, 1411 |
| Bsh1236I | CGCG | 2 cut(s) | 68, 149 |
| BshFI | GGCC | 6 cut(s) | 5, 65, 308, 394, 582, 1071 |
| BshNI | GGYRCC | 2 cut(s) | 88, 215 |
| BsiSI | CCGG | 4 cut(s) | 112, 413, 444, 1035 |
| BslFI | GGGAC | 2 cut(s) | 33, 1101 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 578, 609, 1085 |
| BsmAI | GTCTC | 4 cut(s) | 75, 161, 797, 1406 |
| BsmBI | CGTCTC | 1 cut(s) | 75 |
| BsmFI | GGGAC | 2 cut(s) | 33, 1101 |
| BsnI | GGCC | 6 cut(s) | 5, 65, 308, 394, 582, 1071 |
| Bsp119I | TTCGAA | 2 cut(s) | 11, 258 |
| Bsp143I | GATC | 7 cut(s) | 117, 565, 674, 747, 823, 888, 1356 |
| Bsp19I | CCATGG | 1 cut(s) | 998 |
| BspACI | CCGC | 8 cut(s) | 66, 132, 149, 300, 947, 959, 1100, 1176 |
| BspANI | GGCC | 6 cut(s) | 5, 65, 308, 394, 582, 1071 |
| BspCNI | CTCAG | 2 cut(s) | 175, 1166 |
| BspFNI | CGCG | 2 cut(s) | 68, 149 |
| BspHI | TCATGA | 1 cut(s) | 1368 |
| BspLI | GGNNCC | 2 cut(s) | 90, 217 |
| BspOI | GCTAGC | 1 cut(s) | 954 |
| BspPI | GGATC | 4 cut(s) | 125, 682, 755, 818 |
| BspT104I | TTCGAA | 2 cut(s) | 11, 258 |
| BspT107I | GGYRCC | 2 cut(s) | 88, 215 |
| BsrDI | GCAATG | 1 cut(s) | 342 |
| BsrI | ACTGG | 3 cut(s) | 1021, 1079, 1134 |
| BssECI | CCNNGG | 3 cut(s) | 604, 998, 1035 |
| BssMI | GATC | 7 cut(s) | 117, 565, 674, 747, 823, 888, 1356 |
| BssNI | GRCGYC | 1 cut(s) | 89 |
| BssT1I | CCWWGG | 2 cut(s) | 604, 998 |
| Bst2UI | CCWGG | 2 cut(s) | 213, 488 |
| Bst4CI | ACNGT | 4 cut(s) | 84, 330, 427, 1225 |
| Bst6I | CTCTTC | 2 cut(s) | 483, 991 |
| BstACI | GRCGYC | 1 cut(s) | 89 |
| BstBI | TTCGAA | 2 cut(s) | 11, 258 |
| BstC8I | GCNNGC | 1 cut(s) | 952 |
| BstDEI | CTNAG | 4 cut(s) | 162, 851, 1153, 1407 |
| BstDSI | CCRYGG | 1 cut(s) | 998 |
| BstEII | GGTNACC | 1 cut(s) | 1057 |
| BstF5I | GGATG | 4 cut(s) | 94, 108, 568, 949 |
| BstFNI | CGCG | 2 cut(s) | 68, 149 |
| BstH2I | RGCGCY | 1 cut(s) | 92 |
| BstHHI | GCGC | 1 cut(s) | 91 |
| BstKTI | GATC | 7 cut(s) | 120, 568, 677, 750, 826, 891, 1359 |
| BstMAI | GTCTC | 4 cut(s) | 75, 161, 797, 1406 |
| BstMBI | GATC | 7 cut(s) | 117, 565, 674, 747, 823, 888, 1356 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 32, 726, 956, 1009 |
| BstNI | CCWGG | 2 cut(s) | 213, 488 |
| BstNSI | RCATGY | 1 cut(s) | 60 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 809 |
| BstPI | GGTNACC | 1 cut(s) | 1057 |
| BstSCI | CCNGG | 5 cut(s) | 211, 411, 442, 486, 1034 |
| BstUI | CGCG | 2 cut(s) | 68, 149 |
| BstV1I | GCAGC | 3 cut(s) | 47, 999, 1411 |
| BstX2I | RGATCY | 1 cut(s) | 674 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 999 |
| BstYI | RGATCY | 1 cut(s) | 674 |
| BsuI | GTATCC | 1 cut(s) | 1104 |
| BsuRI | GGCC | 6 cut(s) | 5, 65, 308, 394, 582, 1071 |
| BtgI | CCRYGG | 1 cut(s) | 998 |
| BtsCI | GGATG | 4 cut(s) | 94, 108, 568, 949 |
| BtsIMutI | CAGTG | 2 cut(s) | 583, 1359 |
| Cac8I | GCNNGC | 1 cut(s) | 952 |
| CaiI | CAGNNNCTG | 1 cut(s) | 806 |
| CciI | TCATGA | 1 cut(s) | 1368 |
| CfoI | GCGC | 1 cut(s) | 91 |
| Cfr13I | GGNCC | 2 cut(s) | 307, 1070 |
| CseI | GACGC | 1 cut(s) | 57 |
| CsiI | ACCWGGT | 1 cut(s) | 486 |
| Csp6I | GTAC | 3 cut(s) | 540, 1221, 1333 |
| CviAII | CATG | 7 cut(s) | 57, 650, 694, 955, 999, 1148, 1369 |
| CviQI | GTAC | 3 cut(s) | 540, 1221, 1333 |
| DdeI | CTNAG | 4 cut(s) | 162, 851, 1153, 1407 |
| DinI | GGCGCC | 1 cut(s) | 90 |
| DpnI | GATC | 7 cut(s) | 119, 567, 676, 749, 825, 890, 1358 |
| DpnII | GATC | 7 cut(s) | 117, 565, 674, 747, 823, 888, 1356 |
| EaeI | YGGCCR | 4 cut(s) | 3, 63, 392, 580 |
| Eam1104I | CTCTTC | 2 cut(s) | 483, 991 |
| EarI | CTCTTC | 2 cut(s) | 483, 991 |
| EciI | GGCGGA | 1 cut(s) | 1165 |
| Eco130I | CCWWGG | 2 cut(s) | 604, 998 |
| Eco32I | GATATC | 1 cut(s) | 454 |
| Eco57I | CTGAAG | 3 cut(s) | 342, 828, 1073 |
| Eco91I | GGTNACC | 1 cut(s) | 1057 |
| EcoO65I | GGTNACC | 1 cut(s) | 1057 |
| EcoRII | CCWGG | 2 cut(s) | 211, 486 |
| EcoRV | GATATC | 1 cut(s) | 454 |
| EcoT14I | CCWWGG | 2 cut(s) | 604, 998 |
| EcoT22I | ATGCAT | 1 cut(s) | 598 |
| EgeI | GGCGCC | 1 cut(s) | 90 |
| EheI | GGCGCC | 1 cut(s) | 90 |
| ErhI | CCWWGG | 2 cut(s) | 604, 998 |
| Esp3I | CGTCTC | 1 cut(s) | 75 |
| FaeI | CATG | 7 cut(s) | 60, 653, 697, 958, 1002, 1151, 1372 |
| FaqI | GGGAC | 2 cut(s) | 33, 1101 |
| FatI | CATG | 7 cut(s) | 56, 649, 693, 954, 998, 1147, 1368 |
| FbaI | TGATCA | 2 cut(s) | 565, 1356 |
| Fnu4HI | GCNGC | 8 cut(s) | 36, 66, 133, 948, 960, 1013, 1101, 1425 |
| FokI | GGATG | 4 cut(s) | 81, 95, 555, 956 |
| Fsp4HI | GCNGC | 8 cut(s) | 36, 66, 133, 948, 960, 1013, 1101, 1425 |
| FspBI | CTAG | 5 cut(s) | 32, 561, 605, 633, 951 |
| GlaI | GCGC | 1 cut(s) | 90 |
| GluI | GCNGC | 8 cut(s) | 36, 66, 133, 948, 960, 1013, 1101, 1425 |
| GsuI | CTGGAG | 1 cut(s) | 195 |
| HaeII | RGCGCY | 1 cut(s) | 92 |
| HaeIII | GGCC | 6 cut(s) | 5, 65, 308, 394, 582, 1071 |
| HapII | CCGG | 4 cut(s) | 112, 413, 444, 1035 |
| HgaI | GACGC | 1 cut(s) | 57 |
| HhaI | GCGC | 1 cut(s) | 91 |
| Hin1I | GRCGYC | 1 cut(s) | 89 |
| Hin1II | CATG | 7 cut(s) | 60, 653, 697, 958, 1002, 1151, 1372 |
| Hin6I | GCGC | 1 cut(s) | 89 |
| HinP1I | GCGC | 1 cut(s) | 89 |
| HincII | GTYRAC | 1 cut(s) | 493 |
| HindII | GTYRAC | 1 cut(s) | 493 |
| HindIII | AAGCTT | 1 cut(s) | 662 |
| HinfI | GANTC | 9 cut(s) | 169, 186, 260, 269, 380, 773, 893, 1151, 1338 |
| HpaII | CCGG | 4 cut(s) | 112, 413, 444, 1035 |
| HphI | GGTGA | 4 cut(s) | 134, 981, 1136, 1372 |
| Hpy166II | GTNNAC | 5 cut(s) | 142, 493, 612, 647, 1127 |
| Hpy188I | TCNGA | 7 cut(s) | 185, 265, 682, 747, 1053, 1156, 1263 |
| Hpy188III | TCNNGA | 7 cut(s) | 164, 320, 515, 545, 755, 1342, 1369 |
| Hpy8I | GTNNAC | 5 cut(s) | 142, 493, 612, 647, 1127 |
| Hpy99I | CGWCG | 1 cut(s) | 315 |
| HpyAV | CCTTC | 4 cut(s) | 61, 122, 1048, 1380 |
| HpyCH4III | ACNGT | 4 cut(s) | 84, 330, 427, 1225 |
| HpyCH4IV | ACGT | 2 cut(s) | 243, 538 |
| HpyCH4V | TGCA | 8 cut(s) | 377, 466, 596, 720, 800, 1199, 1247, 1427 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 32, 726, 956, 1009 |
| HpyF3I | CTNAG | 4 cut(s) | 162, 851, 1153, 1407 |
| HpySE526I | ACGT | 2 cut(s) | 243, 538 |
| Hsp92I | GRCGYC | 1 cut(s) | 89 |
| Hsp92II | CATG | 7 cut(s) | 60, 653, 697, 958, 1002, 1151, 1372 |
| HspAI | GCGC | 1 cut(s) | 89 |
| KasI | GGCGCC | 1 cut(s) | 88 |
| Ksp22I | TGATCA | 2 cut(s) | 565, 1356 |
| Kzo9I | GATC | 7 cut(s) | 117, 565, 674, 747, 823, 888, 1356 |
| LmnI | GCTCC | 3 cut(s) | 478, 767, 1000 |
| Lsp1109I | GCAGC | 3 cut(s) | 47, 999, 1411 |
| LweI | GCATC | 4 cut(s) | 491, 605, 687, 934 |
| MabI | ACCWGGT | 1 cut(s) | 486 |
| MaeI | CTAG | 5 cut(s) | 32, 561, 605, 633, 951 |
| MaeII | ACGT | 2 cut(s) | 243, 538 |
| MaeIII | GTNAC | 3 cut(s) | 78, 357, 1057 |
| MalI | GATC | 7 cut(s) | 119, 567, 676, 749, 825, 890, 1358 |
| MboI | GATC | 7 cut(s) | 117, 565, 674, 747, 823, 888, 1356 |
| MfeI | CAATTG | 1 cut(s) | 912 |
| MflI | RGATCY | 1 cut(s) | 674 |
| MlsI | TGGCCA | 3 cut(s) | 5, 394, 582 |
| MluCI | AATT | 8 cut(s) | 7, 173, 341, 912, 980, 1027, 1194, 1319 |
| MluNI | TGGCCA | 3 cut(s) | 5, 394, 582 |
| Mly113I | GGCGCC | 1 cut(s) | 89 |
| MlyI | GAGTC | 4 cut(s) | 163, 180, 767, 1145 |
| MmeI | TCCRAC | 1 cut(s) | 1286 |
| Mox20I | TGGCCA | 3 cut(s) | 5, 394, 582 |
| Mph1103I | ATGCAT | 1 cut(s) | 598 |
| MscI | TGGCCA | 3 cut(s) | 5, 394, 582 |
| MseI | TTAA | 8 cut(s) | 153, 555, 789, 837, 921, 1025, 1106, 1392 |
| Msp20I | TGGCCA | 3 cut(s) | 5, 394, 582 |
| MspA1I | CMGCKG | 2 cut(s) | 623, 1012 |
| MspI | CCGG | 4 cut(s) | 112, 413, 444, 1035 |
| MspR9I | CCNGG | 5 cut(s) | 213, 413, 444, 488, 1036 |
| MunI | CAATTG | 1 cut(s) | 912 |
| MvaI | CCWGG | 2 cut(s) | 213, 488 |
| MvnI | CGCG | 2 cut(s) | 68, 149 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 32, 726, 956, 1009 |
| NarI | GGCGCC | 1 cut(s) | 89 |
| NciI | CCSGG | 3 cut(s) | 413, 444, 1036 |
| NcoI | CCATGG | 1 cut(s) | 998 |
| NdeII | GATC | 7 cut(s) | 117, 565, 674, 747, 823, 888, 1356 |
| NheI | GCTAGC | 1 cut(s) | 950 |
| NlaIII | CATG | 7 cut(s) | 60, 653, 697, 958, 1002, 1151, 1372 |
| NlaIV | GGNNCC | 2 cut(s) | 90, 217 |
| NmuCI | GTSAC | 1 cut(s) | 78 |
| NsiI | ATGCAT | 1 cut(s) | 598 |
| NspI | RCATGY | 1 cut(s) | 60 |
| NspV | TTCGAA | 2 cut(s) | 11, 258 |
| PagI | TCATGA | 1 cut(s) | 1368 |
| PciI | ACATGT | 1 cut(s) | 56 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 17, 1209 |
| PfeI | GAWTC | 5 cut(s) | 260, 269, 380, 893, 1338 |
| PflFI | GACNNNGTC | 1 cut(s) | 616 |
| PfoI | TCCNGGA | 2 cut(s) | 411, 442 |
| PkrI | GCNGC | 8 cut(s) | 37, 67, 134, 949, 961, 1014, 1102, 1426 |
| PleI | GAGTC | 4 cut(s) | 163, 180, 767, 1145 |
| PluTI | GGCGCC | 1 cut(s) | 92 |
| PpsI | GAGTC | 4 cut(s) | 163, 180, 767, 1145 |
| PscI | ACATGT | 1 cut(s) | 56 |
| PshAI | GACNNNNGTC | 1 cut(s) | 809 |
| Psp6I | CCWGG | 2 cut(s) | 211, 486 |
| PspEI | GGTNACC | 1 cut(s) | 1057 |
| PspGI | CCWGG | 2 cut(s) | 211, 486 |
| PspN4I | GGNNCC | 2 cut(s) | 90, 217 |
| PspPI | GGNCC | 2 cut(s) | 307, 1070 |
| PstNI | CAGNNNCTG | 1 cut(s) | 806 |
| PsuI | RGATCY | 1 cut(s) | 674 |
| PsyI | GACNNNGTC | 1 cut(s) | 616 |
| PvuII | CAGCTG | 2 cut(s) | 623, 1012 |
| RsaI | GTAC | 3 cut(s) | 541, 1222, 1334 |
| RsaNI | GTAC | 3 cut(s) | 540, 1221, 1333 |
| SaqAI | TTAA | 8 cut(s) | 153, 555, 789, 837, 921, 1025, 1106, 1392 |
| SatI | GCNGC | 8 cut(s) | 36, 66, 133, 948, 960, 1013, 1101, 1425 |
| Sau3AI | GATC | 7 cut(s) | 117, 565, 674, 747, 823, 888, 1356 |
| Sau96I | GGNCC | 2 cut(s) | 307, 1070 |
| SchI | GAGTC | 4 cut(s) | 163, 180, 767, 1145 |
| ScrFI | CCNGG | 5 cut(s) | 213, 413, 444, 488, 1036 |
| SexAI | ACCWGGT | 1 cut(s) | 486 |
| SfaNI | GCATC | 4 cut(s) | 491, 605, 687, 934 |
| SfoI | GGCGCC | 1 cut(s) | 90 |
| SfuI | TTCGAA | 2 cut(s) | 11, 258 |
| SmlI | CTYRAG | 1 cut(s) | 515 |
| SmoI | CTYRAG | 1 cut(s) | 515 |
| Sse9I | AATT | 8 cut(s) | 7, 173, 341, 912, 980, 1027, 1194, 1319 |
| SsiI | CCGC | 8 cut(s) | 66, 132, 149, 300, 947, 959, 1100, 1176 |
| SspDI | GGCGCC | 1 cut(s) | 88 |
| SspMI | CTAG | 5 cut(s) | 32, 561, 605, 633, 951 |
| StyD4I | CCNGG | 5 cut(s) | 211, 411, 442, 486, 1034 |
| StyI | CCWWGG | 2 cut(s) | 604, 998 |
| TaaI | ACNGT | 4 cut(s) | 84, 330, 427, 1225 |
| TaiI | ACGT | 2 cut(s) | 246, 541 |
| TaqI | TCGA | 3 cut(s) | 11, 258, 891 |
| TasI | AATT | 8 cut(s) | 7, 173, 341, 912, 980, 1027, 1194, 1319 |
| TauI | GCSGC | 5 cut(s) | 68, 135, 950, 962, 1103 |
| TfiI | GAWTC | 5 cut(s) | 260, 269, 380, 893, 1338 |
| Tru1I | TTAA | 8 cut(s) | 153, 555, 789, 837, 921, 1025, 1106, 1392 |
| Tru9I | TTAA | 8 cut(s) | 153, 555, 789, 837, 921, 1025, 1106, 1392 |
| TscAI | CASTG | 2 cut(s) | 583, 1359 |
| TseFI | GTSAC | 1 cut(s) | 78 |
| TseI | GCWGC | 3 cut(s) | 35, 1012, 1424 |
| Tsp45I | GTSAC | 1 cut(s) | 78 |
| TspDTI | ATGAA | 4 cut(s) | 270, 353, 945, 1385 |
| TspGWI | ACGGA | 4 cut(s) | 35, 780, 894, 1208 |
| TspRI | CASTG | 2 cut(s) | 583, 1359 |
| Tth111I | GACNNNGTC | 1 cut(s) | 616 |
| XapI | RAATTY | 2 cut(s) | 980, 1027 |
| XceI | RCATGY | 1 cut(s) | 60 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 13 |
| XmaJI | CCTAGG | 1 cut(s) | 604 |
| XspI | CTAG | 5 cut(s) | 32, 561, 605, 633, 951 |
| Zsp2I | ATGCAT | 1 cut(s) | 598 |