Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0015432

Physical Location & Seq

Genomic Coordinates Forward (+)

31814151 .. 31816974

Gene Structure 2824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33660.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGGGCTGACGCTGTTCTTGCTAATTTGGCTCGCCAAGTTCCCGCATTTGGCAGACGAGCTGTGGGCAATGAAATTGGGTTTGAAGCTTCTGCAAGAGAGAGCCAGAGTTGGATCCTTCTGGTGGCCATACATTGGCAACCTCCCTGAAGCATTTAGCGTACCTATCTTCTTCCCTGGCGAGGACATAAAGAATTTGCAGTATGCCCCTGTTCTTTACCAGGTAAACAAGAGATGCAGATTTCTTCTTGAATTTGAACAAGAAGTGAGACGTGCTCTTGATAATAACAAACCAAGTGATCACCCTTTTGGTGGCCAAGCTGTGGGTGCATCAGCCCTTGGATGGGCCATGTCAGCAGTTTCCTCTCGGGCATTCCGTTTATATGGTAAAAAGCTTGCAGATGGCAACTATGATGATGTCCCCATGATGCTTCCTCTTATCGATATGTGCAACCATAGTTTCAAGCCAAATGCACGAATACTTCAAGACCAAGATGACAGGAACAAGAAGATGCTAGTAAAGGTTGTGGCCGAAACAGAGATTAAACAGAATGATTGCTTAGAACTCAACTATGGAGGTTTGAGCAATGATCTTTTCCTACTGGATTATGGATTTGTGGTACCTTCAAACCCTTATGACTGTATTGAGCTGAAATATGATGGAGCATTTTTGGATGCTGCGAGTATGGCTGCTGGAGAATCATCACCCAGCTTCTCTGCACCAGCTCCATGGCAGAAAGAAATATTATGCCAGCTAAAATTAGATGGGGAAGCCCCTCTTCTCAAGGTGTGCTTGGGGGGTTCAGAAGTGGTTGAGGGACGACTGTTGGCAGCCTTAAGAGTTGTTCTTGCCAGTGATGTAGAAACAGTGCAGAAACATGATTTAAATACTCTTAAATCCATATCAGTTGAAGCTCCCCTTGGTATTGCAAATGAGGTGGCTGCTTTTCGGACCGTTATTGCGCTATGTGTGATTGCACTTGGACACTTCCCAACCAAACTCATGGAGGATGAATCCATCTTGCAAAAGGGCGTTTCAGATTCTACCGAGTTGGCTATCCAGTTCAGAATTCTGAAGAAAAGTGTCATTATAGATGTGATGAGAGATCTCACAAGGAGGGTAAAGTTACTTTCATCAAAAGAAACAGCCACTGCTCAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003713 GO:0003824 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010452 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018023 GO:0018024 GO:0018026 GO:0018027 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0046975 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:0140110 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

388

Amino Acids

42.95

Weight (kDa)

5.7

Isoelectric Point (pI)

40.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24610
fragaria_vesca	FvH4_4g33660
malus_domestica	MD13G1020900.v1.1 MD16G1019300.v1.1
prunus_persica	Prupe.1G332800_v2.0.a1
pyrus_communis	pycom13g01770 pycom16g01730
rosa_chinensis	RchiOBHm_Chr4g0443121
rosa_laevigata	RLG00000005952
rosa_multiflora	Rmu_sc0007968.1_g000013
rosa_roxburghii	Rroxscaffold_5G00383740
rosa_rugosa	Rorug04G0344600
rosa_samantha	Rh4BG410500 Rh4CG426000 Rh4DG405500
rosa_wichuraiana	Rw4G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	619
AccB1I	GGYRCC	1 cut(s)	619
AccB7I	CCANNNNNTGG	2 cut(s)	134, 322
AciI	CCGC	1 cut(s)	44
AclWI	GGATC	2 cut(s)	108, 121
AcoI	YGGCCR	3 cut(s)	125, 313, 528
AcsI	RAATTY	3 cut(s)	193, 251, 1068
AcuI	CTGAAG	2 cut(s)	168, 1094
AfaI	GTAC	2 cut(s)	162, 621
AfiI	CCNNNNNNNGG	8 cut(s)	49, 123, 134, 181, 311, 322, 342, 343
AflII	CTTAAG	1 cut(s)	835
AgsI	TTSAA	7 cut(s)	85, 251, 257, 463, 485, 627, 911
AjiI	CACGTC	1 cut(s)	272
AjnI	CCWGG	2 cut(s)	175, 219
AjuI	GAANNNNNNNTTGG	2 cut(s)	903, 935
AluBI	AGCT	9 cut(s)	61, 88, 320, 394, 649, 711, 725, 754, 914
AluI	AGCT	9 cut(s)	61, 88, 320, 394, 649, 711, 725, 754, 914
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	2 cut(s)	108, 121
AlwNI	CAGNNNCTG	1 cut(s)	1151
Ama87I	CYCGRG	1 cut(s)	366
AoxI	GGCC	4 cut(s)	125, 313, 345, 528
ApeKI	GCWGC	4 cut(s)	677, 689, 830, 941
ApoI	RAATTY	3 cut(s)	193, 251, 1068
Asp718I	GGTACC	1 cut(s)	619
AspLEI	GCGC	1 cut(s)	964
AspS9I	GGNCC	2 cut(s)	345, 951
AsuHPI	GGTGA	2 cut(s)	293, 696
AvaI	CYCGRG	1 cut(s)	366
AvaII	GGWCC	1 cut(s)	951
BalI	TGGCCA	2 cut(s)	127, 315
BamHI	GGATCC	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	619
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	4 cut(s)	664, 676, 842, 928
BccI	CCATC	5 cut(s)	336, 395, 653, 758, 1025
BciT130I	CCWGG	2 cut(s)	177, 221
BclI	TGATCA	1 cut(s)	298
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	1 cut(s)	515
BfrI	CTTAAG	1 cut(s)	835
BglII	AGATCT	1 cut(s)	1105
BisI	GCNGC	4 cut(s)	678, 690, 831, 942
BlsI	GCNGC	4 cut(s)	679, 691, 832, 943
Bme1390I	CCNGG	2 cut(s)	177, 221
Bme18I	GGWCC	1 cut(s)	951
BmeT110I	CYCGRG	1 cut(s)	366
BmgBI	CACGTC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	345, 951
BmiI	GGNNCC	2 cut(s)	115, 621
BmrFI	CCNGG	2 cut(s)	177, 221
BmsI	GCATC	5 cut(s)	224, 338, 417, 501, 664
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
BpmI	CTGGAG	1 cut(s)	714
BpuEI	CTTGAG	2 cut(s)	767, 1140
Bsa29I	ATCGAT	1 cut(s)	441
BsaJI	CCNNGG	4 cut(s)	175, 337, 728, 919
Bsc4I	CCNNNNNNNGG	8 cut(s)	49, 123, 134, 181, 311, 322, 342, 343
Bse1I	ACTGG	3 cut(s)	606, 852, 1060
Bse3DI	GCAATG	2 cut(s)	75, 592
BseBI	CCWGG	2 cut(s)	177, 221
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	4 cut(s)	175, 337, 728, 919
BseGI	GGATG	3 cut(s)	347, 679, 1015
BseLI	CCNNNNNNNGG	8 cut(s)	49, 123, 134, 181, 311, 322, 342, 343
BseMI	GCAATG	2 cut(s)	75, 592
BseNI	ACTGG	3 cut(s)	606, 852, 1060
BseXI	GCAGC	4 cut(s)	664, 676, 842, 928
BseYI	CCCAGC	1 cut(s)	707
BsgI	GTGCAG	2 cut(s)	702, 890
BshFI	GGCC	4 cut(s)	127, 315, 347, 530
BshNI	GGYRCC	1 cut(s)	619
BshVI	ATCGAT	1 cut(s)	441
BsiHKAI	GWGCWC	1 cut(s)	277
BsiHKCI	CYCGRG	1 cut(s)	366
BslFI	GGGAC	2 cut(s)	404, 831
BslI	CCNNNNNNNGG	8 cut(s)	49, 123, 134, 181, 311, 322, 342, 343
BsmAI	GTCTC	1 cut(s)	262
BsmBI	CGTCTC	1 cut(s)	262
BsmFI	GGGAC	2 cut(s)	404, 831
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	4 cut(s)	127, 315, 347, 530
BsoBI	CYCGRG	1 cut(s)	366
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	4 cut(s)	113, 298, 589, 1105
Bsp19I	CCATGG	1 cut(s)	728
BspACI	CCGC	1 cut(s)	44
BspANI	GGCC	4 cut(s)	127, 315, 347, 530
BspDI	ATCGAT	1 cut(s)	441
BspLI	GGNNCC	2 cut(s)	115, 621
BspPI	GGATC	2 cut(s)	108, 121
BspT107I	GGYRCC	1 cut(s)	619
BspTI	CTTAAG	1 cut(s)	835
BsrDI	GCAATG	2 cut(s)	75, 592
BsrI	ACTGG	3 cut(s)	606, 852, 1060
BssECI	CCNNGG	4 cut(s)	175, 337, 728, 919
BssMI	GATC	4 cut(s)	113, 298, 589, 1105
BssT1I	CCWWGG	3 cut(s)	337, 728, 919
Bst2UI	CCWGG	2 cut(s)	177, 221
Bst4CI	ACNGT	4 cut(s)	641, 825, 868, 955
Bst6I	CTCTTC	1 cut(s)	783
BstAFI	CTTAAG	1 cut(s)	835
BstC8I	GCNNGC	3 cut(s)	33, 396, 752
BstDEI	CTNAG	1 cut(s)	559
BstDSI	CCRYGG	1 cut(s)	728
BstF5I	GGATG	3 cut(s)	347, 679, 1015
BstHHI	GCGC	1 cut(s)	964
BstKTI	GATC	4 cut(s)	116, 301, 592, 1108
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	4 cut(s)	113, 298, 589, 1105
BstMWI	GCNNNNNNNGC	5 cut(s)	19, 28, 326, 353, 686
BstNI	CCWGG	2 cut(s)	177, 221
BstSCI	CCNGG	2 cut(s)	175, 219
BstV1I	GCAGC	4 cut(s)	664, 676, 842, 928
BstX2I	RGATCY	2 cut(s)	113, 1105
BstXI	CCANNNNNNTGG	2 cut(s)	729, 1003
BstYI	RGATCY	2 cut(s)	113, 1105
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	4 cut(s)	127, 315, 347, 530
BsuTUI	ATCGAT	1 cut(s)	441
BtgI	CCRYGG	1 cut(s)	728
BtrI	CACGTC	1 cut(s)	272
BtsCI	GGATG	3 cut(s)	347, 679, 1015
BtsI	GCAGTG	1 cut(s)	1149
BtsIMutI	CAGTG	3 cut(s)	859, 873, 1149
Cac8I	GCNNGC	3 cut(s)	33, 396, 752
CaiI	CAGNNNCTG	1 cut(s)	1151
CfoI	GCGC	1 cut(s)	964
Cfr13I	GGNCC	2 cut(s)	345, 951
ClaI	ATCGAT	1 cut(s)	441
CpoI	CGGWCCG	1 cut(s)	951
CseI	GACGC	1 cut(s)	19
CsiI	ACCWGGT	1 cut(s)	219
Csp6I	GTAC	2 cut(s)	161, 620
CspCI	CAANNNNNGTGG	2 cut(s)	918, 953
CspI	CGGWCCG	1 cut(s)	951
CviAII	CATG	5 cut(s)	349, 424, 729, 878, 1003
CviQI	GTAC	2 cut(s)	161, 620
DdeI	CTNAG	1 cut(s)	559
DpnI	GATC	4 cut(s)	115, 300, 591, 1107
DpnII	GATC	4 cut(s)	113, 298, 589, 1105
DraI	TTTAAA	1 cut(s)	885
EaeI	YGGCCR	3 cut(s)	125, 313, 528
Eam1104I	CTCTTC	1 cut(s)	783
EarI	CTCTTC	1 cut(s)	783
Eco130I	CCWWGG	3 cut(s)	337, 728, 919
Eco47I	GGWCC	1 cut(s)	951
Eco57I	CTGAAG	2 cut(s)	168, 1094
Eco88I	CYCGRG	1 cut(s)	366
EcoRI	GAATTC	1 cut(s)	1068
EcoRII	CCWGG	2 cut(s)	175, 219
EcoT14I	CCWWGG	3 cut(s)	337, 728, 919
ErhI	CCWWGG	3 cut(s)	337, 728, 919
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	5 cut(s)	352, 427, 732, 881, 1006
FalI	AAGNNNNNCTT	6 cut(s)	762, 794, 776, 808, 903, 935
FaqI	GGGAC	2 cut(s)	404, 831
FatI	CATG	5 cut(s)	348, 423, 728, 877, 1002
FauI	CCCGC	1 cut(s)	51
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	678, 690, 831, 942
FokI	GGATG	3 cut(s)	354, 686, 1022
Fsp4HI	GCNGC	4 cut(s)	678, 690, 831, 942
FspBI	CTAG	1 cut(s)	515
GlaI	GCGC	1 cut(s)	963
GluI	GCNGC	4 cut(s)	678, 690, 831, 942
GsaI	CCCAGC	1 cut(s)	711
GsuI	CTGGAG	1 cut(s)	714
HaeIII	GGCC	4 cut(s)	127, 315, 347, 530
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	1 cut(s)	964
Hin1II	CATG	5 cut(s)	352, 427, 732, 881, 1006
Hin6I	GCGC	1 cut(s)	962
HinP1I	GCGC	1 cut(s)	962
HindIII	AAGCTT	2 cut(s)	86, 392
HinfI	GANTC	3 cut(s)	698, 1013, 1040
HphI	GGTGA	2 cut(s)	293, 696
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	5 cut(s)	805, 951, 1039, 1067, 1074
Hpy188III	TCNNGA	3 cut(s)	248, 278, 485
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	127, 633
HpyCH4III	ACNGT	4 cut(s)	641, 825, 868, 955
HpyCH4IV	ACGT	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	5 cut(s)	19, 28, 326, 353, 686
HpyF3I	CTNAG	1 cut(s)	559
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	5 cut(s)	352, 427, 732, 881, 1006
HspAI	GCGC	1 cut(s)	962
KpnI	GGTACC	1 cut(s)	623
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	113, 298, 589, 1105
LmnI	GCTCC	3 cut(s)	662, 730, 919
Lsp1109I	GCAGC	4 cut(s)	664, 676, 842, 928
LweI	GCATC	5 cut(s)	224, 338, 417, 501, 664
MabI	ACCWGGT	1 cut(s)	219
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	1125
MalI	GATC	4 cut(s)	115, 300, 591, 1107
MboI	GATC	4 cut(s)	113, 298, 589, 1105
MboII	GAAGA	6 cut(s)	160, 163, 236, 520, 770, 1087
MflI	RGATCY	2 cut(s)	113, 1105
MhlI	GDGCHC	1 cut(s)	277
MlsI	TGGCCA	2 cut(s)	127, 315
MluCI	AATT	6 cut(s)	24, 74, 193, 251, 758, 1068
MluNI	TGGCCA	2 cut(s)	127, 315
MmeI	TCCRAC	1 cut(s)	91
Mox20I	TGGCCA	2 cut(s)	127, 315
MscI	TGGCCA	2 cut(s)	127, 315
MseI	TTAA	4 cut(s)	543, 836, 884, 894
Msp20I	TGGCCA	2 cut(s)	127, 315
MspCI	CTTAAG	1 cut(s)	835
MspR9I	CCNGG	2 cut(s)	177, 221
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	2 cut(s)	177, 221
MwoI	GCNNNNNNNGC	5 cut(s)	19, 28, 326, 353, 686
NcoI	CCATGG	1 cut(s)	728
NdeII	GATC	4 cut(s)	113, 298, 589, 1105
NlaIII	CATG	5 cut(s)	352, 427, 732, 881, 1006
NlaIV	GGNNCC	2 cut(s)	115, 621
PcsI	WCGNNNNNNNCGW	1 cut(s)	373
PctI	GAATGC	1 cut(s)	371
PfeI	GAWTC	3 cut(s)	698, 1013, 1040
PflMI	CCANNNNNTGG	2 cut(s)	134, 322
PkrI	GCNGC	4 cut(s)	679, 691, 832, 943
Psp6I	CCWGG	2 cut(s)	175, 219
PspFI	CCCAGC	1 cut(s)	707
PspGI	CCWGG	2 cut(s)	175, 219
PspN4I	GGNNCC	2 cut(s)	115, 621
PspPI	GGNCC	2 cut(s)	345, 951
PstNI	CAGNNNCTG	1 cut(s)	1151
PsuI	RGATCY	2 cut(s)	113, 1105
RsaI	GTAC	2 cut(s)	162, 621
RsaNI	GTAC	2 cut(s)	161, 620
Rsr2I	CGGWCCG	1 cut(s)	951
RsrII	CGGWCCG	1 cut(s)	951
SaqAI	TTAA	4 cut(s)	543, 836, 884, 894
SatI	GCNGC	4 cut(s)	678, 690, 831, 942
Sau3AI	GATC	4 cut(s)	113, 298, 589, 1105
Sau96I	GGNCC	2 cut(s)	345, 951
ScrFI	CCNGG	2 cut(s)	177, 221
SduI	GDGCHC	1 cut(s)	277
SexAI	ACCWGGT	1 cut(s)	219
SfaNI	GCATC	5 cut(s)	224, 338, 417, 501, 664
SinI	GGWCC	1 cut(s)	951
SmiI	ATTTAAAT	1 cut(s)	885
SmlI	CTYRAG	3 cut(s)	782, 835, 1155
SmoI	CTYRAG	3 cut(s)	782, 835, 1155
Sse9I	AATT	6 cut(s)	24, 74, 193, 251, 758, 1068
SsiI	CCGC	1 cut(s)	44
SspI	AATATT	1 cut(s)	744
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	2 cut(s)	175, 219
StyI	CCWWGG	3 cut(s)	337, 728, 919
SwaI	ATTTAAAT	1 cut(s)	885
TaaI	ACNGT	4 cut(s)	641, 825, 868, 955
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	1 cut(s)	441
TasI	AATT	6 cut(s)	24, 74, 193, 251, 758, 1068
TfiI	GAWTC	3 cut(s)	698, 1013, 1040
Tru1I	TTAA	4 cut(s)	543, 836, 884, 894
Tru9I	TTAA	4 cut(s)	543, 836, 884, 894
TscAI	CASTG	3 cut(s)	859, 873, 1156
TseI	GCWGC	4 cut(s)	677, 689, 830, 941
TspDTI	ATGAA	3 cut(s)	86, 1026, 1122
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	3 cut(s)	859, 873, 1156
Van91I	CCANNNNNTGG	2 cut(s)	134, 322
Vha464I	CTTAAG	1 cut(s)	835
VpaK11BI	GGWCC	1 cut(s)	951
XapI	RAATTY	3 cut(s)	193, 251, 1068
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.