Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001891

Physical Location & Seq

Genomic Coordinates Forward (+)

9086804 .. 9089375

Gene Structure 2572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G26260.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAGTGACAAAGACGAGTTTGCCGCAAAGAAGAAGGATTTGGTCAATACGCCAGTGGATTTGTATCCTCCGGAGAATCCAATGTTGGGTCCTTCTCCGATGATGGATTCATTCAGAGAAACTCTTTGGCATGATGGTGGTTTCAATGTCCACACAGATGCAGACACTTCCTTTAGAGGTAATAATAATATTGATATACCTCTTGAAATGGGTTGGAATATGGCTCAGTTCCCTGCAGATTCAGGATTCATTGAGCGTGCTGCAAAGTTTTCTTTTTTTGGATGTGGTGAAATGATGATGAACCAACAACAATCATCTCTTGGAGTTCCAGATTCAACTGGCTTGTTTCTTCAAGATACACAGATTCCTAGTGGATCCAAACTAGATAATGGTCCTCTTACTGATGCATCTAAGTTAGTGAAAGAGAGATCGATTAATAATGTATCAGAGGATTCTCAATCTAGTGGAGGTAATGGTCATGATGATGCTAAGTGTGGGCAAACATCTTCCAAGGGGTTTAGTAGTAAGAAGAGGAAAAGAATTGGGAAGGATTGTGAAGAAGAAGAAGATAAAAAGCAAAAGGATGAGCAAAGTCCAACTTCAAATGCGAACAAGACAAACAGTGAGAAGCAACCTTCTGATTCTTTAAAGGATGGGTATATTCACATGAGGGCACGAAGAGGCCAGGCTACTAATAGTCACAGTCTTGCTGAAAGAGTAAGAAGAGAAAAAATCAGTGAAAGGATGAAGTTCTTGCAAGATCTTGTGCCAGGTTGCGACAAGGTGACTGGTAAGGCAGTTATGCTCGATGAAATCATTAACTATGTGCAATCACTTCAATGCCAAATCGAGTTTTTATCGATGAAACTTTCGGCTGTGAATCCTGTGCTCGATTTTAACCTCGAAAGCCTCCTTGCAAAAGATGCTCTTCAATCATCTGCACCGACATTTCCCCACAACATGTCGATGCTTTATCCTCCTGTATCGTATCTCTCTCAAACAGGATTCATGCAACCGAACATTTCCTCAATGTCGCTATTGAGTGGAGGATTAAAACGGCAGGAAACACATGGATATGAAAGTGATCACCACAATCTTGTCCACATGAACCATGAAACCGGCACTGCACCTGATCATGAAGATACAACAGCTGACATGAAGGTGGAGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

390

Amino Acids

43.24

Weight (kDa)

5.35

Isoelectric Point (pI)

56.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	210 - 258	7.9e-07	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	216 - 259	7e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26260 AT1G26260 AT1G26260 AT1G26260 AT1G26260 AT1G26260 AT1G68920 AT1G68920 AT1G68920 AT1G68920
fragaria_vesca	FvH4_4g28910 FvH4_4g28910 FvH4_4g28910
malus_domestica	MD13G1054700.v1.1 MD16G1053600.v1.1
prunus_persica	Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1
pyrus_communis	pycom13g04850 pycom16g04670
rosa_chinensis	RchiOBHm_Chr4g0437041
rosa_laevigata	RLG00000006476
rosa_multiflora	Rmu_sc0003436.1_g000014 Rmu_sc0008325.1_g000009
rosa_roxburghii	Rroxscaffold_5G00378110
rosa_rugosa	Rorug04G0297900 Rorug04G0297900 Rorug04G0297900
rosa_samantha	Rh4AG352300 Rh4BG361500 Rh4CG375800 Rh4DG355700
rosa_wichuraiana	Rw4G030840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	2 cut(s)	369, 382
AfiI	CCNNNNNNNGG	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	960
AgsI	TTSAA	7 cut(s)	145, 206, 336, 353, 603, 839, 932
AjnI	CCWGG	2 cut(s)	684, 769
AjuI	GAANNNNNNNTTGG	4 cut(s)	23, 55, 68, 100
AluBI	AGCT	1 cut(s)	1151
AluI	AGCT	1 cut(s)	1151
Alw21I	GWGCWC	1 cut(s)	891
AlwI	GGATC	2 cut(s)	369, 382
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	1 cut(s)	682
ApeKI	GCWGC	1 cut(s)	260
AseI	ATTAAT	1 cut(s)	435
AspS9I	GGNCC	2 cut(s)	89, 392
AsuHPI	GGTGA	3 cut(s)	299, 796, 1079
AvaII	GGWCC	2 cut(s)	89, 392
BaeGI	GKGCMC	1 cut(s)	676
BamHI	GGATCC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	891
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	3 cut(s)	97, 128, 647
BceAI	ACGGC	2 cut(s)	1073, 1153
BciT130I	CCWGG	2 cut(s)	686, 771
BciVI	GTATCC	1 cut(s)	75
BclI	TGATCA	2 cut(s)	1084, 1132
BfaI	CTAG	3 cut(s)	369, 383, 462
BfmI	CTRYAG	1 cut(s)	234
BfuI	GTATCC	1 cut(s)	75
BglII	AGATCT	1 cut(s)	760
BisI	GCNGC	2 cut(s)	24, 261
BlsI	GCNGC	2 cut(s)	25, 262
Bme1390I	CCNGG	2 cut(s)	686, 771
Bme18I	GGWCC	2 cut(s)	89, 392
BmgT120I	GGNCC	2 cut(s)	89, 392
BmiI	GGNNCC	3 cut(s)	90, 376, 1167
BmrFI	CCNGG	2 cut(s)	686, 771
BmsI	GCATC	6 cut(s)	148, 394, 416, 475, 913, 957
Bsa29I	ATCGAT	2 cut(s)	431, 860
BsaBI	GATNNNNATC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	510
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse118I	RCCGGY	1 cut(s)	1118
Bse1I	ACTGG	3 cut(s)	53, 343, 793
Bse8I	GATNNNNATC	1 cut(s)	63
BseAI	TCCGGA	1 cut(s)	70
BseBI	CCWGG	2 cut(s)	686, 771
BseCI	ATCGAT	2 cut(s)	431, 860
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	4 cut(s)	287, 589, 658, 750
BseJI	GATNNNNATC	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	3 cut(s)	53, 343, 793
BseSI	GKGCMC	1 cut(s)	676
BseXI	GCAGC	1 cut(s)	247
BsgI	GTGCAG	2 cut(s)	924, 1110
BshFI	GGCC	1 cut(s)	684
BshVI	ATCGAT	2 cut(s)	431, 860
BsiHKAI	GWGCWC	1 cut(s)	891
BsiSI	CCGG	2 cut(s)	71, 1119
BslI	CCNNNNNNNGG	1 cut(s)	86
BsnI	GGCC	1 cut(s)	684
Bsp1286I	GDGCHC	2 cut(s)	676, 891
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	5 cut(s)	374, 428, 760, 1084, 1132
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	684
BspCNI	CTCAG	1 cut(s)	238
BspDI	ATCGAT	2 cut(s)	431, 860
BspEI	TCCGGA	1 cut(s)	70
BspHI	TCATGA	2 cut(s)	478, 1135
BspLI	GGNNCC	3 cut(s)	90, 376, 1167
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	2 cut(s)	369, 382
BspQI	GCTCTTC	1 cut(s)	933
BsrFI	RCCGGY	1 cut(s)	1118
BsrI	ACTGG	3 cut(s)	53, 343, 793
BssAI	RCCGGY	1 cut(s)	1118
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	5 cut(s)	374, 428, 760, 1084, 1132
BssT1I	CCWWGG	1 cut(s)	510
Bst2UI	CCWGG	2 cut(s)	686, 771
Bst4CI	ACNGT	2 cut(s)	623, 704
Bst6I	CTCTTC	4 cut(s)	524, 673, 718, 933
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	3 cut(s)	225, 411, 489
BstF5I	GGATG	4 cut(s)	287, 589, 658, 750
BstKTI	GATC	5 cut(s)	377, 431, 763, 1087, 1135
BstMBI	GATC	5 cut(s)	374, 428, 760, 1084, 1132
BstMWI	GCNNNNNNNGC	1 cut(s)	923
BstNI	CCWGG	2 cut(s)	686, 771
BstNSI	RCATGY	1 cut(s)	964
BstSCI	CCNGG	2 cut(s)	684, 769
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	676
BstV1I	GCAGC	1 cut(s)	247
BstX2I	RGATCY	2 cut(s)	374, 760
BstYI	RGATCY	2 cut(s)	374, 760
Bsu15I	ATCGAT	2 cut(s)	431, 860
BsuI	GTATCC	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	684
BsuTUI	ATCGAT	2 cut(s)	431, 860
BtsCI	GGATG	4 cut(s)	287, 589, 658, 750
BtsI	GCAGTG	1 cut(s)	1122
BtsIMutI	CAGTG	4 cut(s)	60, 628, 742, 1122
Cac8I	GCNNGC	1 cut(s)	258
CciI	TCATGA	2 cut(s)	478, 1135
Cfr10I	RCCGGY	1 cut(s)	1118
Cfr13I	GGNCC	2 cut(s)	89, 392
ClaI	ATCGAT	2 cut(s)	431, 860
CviJI	RGCY	8 cut(s)	224, 342, 684, 689, 875, 909, 1151, 1168
CviKI_1	RGCY	8 cut(s)	224, 342, 684, 689, 875, 909, 1151, 1168
DdeI	CTNAG	3 cut(s)	225, 411, 489
DpnI	GATC	5 cut(s)	376, 430, 762, 1086, 1134
DpnII	GATC	5 cut(s)	374, 428, 760, 1084, 1132
DraI	TTTAAA	1 cut(s)	648
Eam1104I	CTCTTC	4 cut(s)	524, 673, 718, 933
EarI	CTCTTC	4 cut(s)	524, 673, 718, 933
Eco130I	CCWWGG	1 cut(s)	510
Eco47I	GGWCC	2 cut(s)	89, 392
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRII	CCWGG	2 cut(s)	684, 769
EcoT14I	CCWWGG	1 cut(s)	510
EcoT22I	ATGCAT	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	510
FalI	AAGNNNNNCTT	4 cut(s)	583, 615, 912, 944
FbaI	TGATCA	2 cut(s)	1084, 1132
Fnu4HI	GCNGC	2 cut(s)	24, 261
FokI	GGATG	4 cut(s)	294, 596, 665, 757
Fsp4HI	GCNGC	2 cut(s)	24, 261
FspBI	CTAG	3 cut(s)	369, 383, 462
GluI	GCNGC	2 cut(s)	24, 261
HaeIII	GGCC	1 cut(s)	684
HapII	CCGG	2 cut(s)	71, 1119
HpaII	CCGG	2 cut(s)	71, 1119
HphI	GGTGA	3 cut(s)	299, 796, 1079
Hpy166II	GTNNAC	2 cut(s)	151, 1102
Hpy188I	TCNGA	4 cut(s)	99, 116, 448, 640
Hpy188III	TCNNGA	7 cut(s)	71, 203, 243, 329, 353, 479, 1136
Hpy8I	GTNNAC	2 cut(s)	151, 1102
HpyAV	CCTTC	5 cut(s)	28, 102, 541, 645, 1153
HpyCH4III	ACNGT	2 cut(s)	623, 704
HpyF10VI	GCNNNNNNNGC	1 cut(s)	923
HpyF3I	CTNAG	3 cut(s)	225, 411, 489
Kpn2I	TCCGGA	1 cut(s)	70
Ksp22I	TGATCA	2 cut(s)	1084, 1132
Kzo9I	GATC	5 cut(s)	374, 428, 760, 1084, 1132
LguI	GCTCTTC	1 cut(s)	933
LmnI	GCTCC	1 cut(s)	1165
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	6 cut(s)	148, 394, 416, 475, 913, 957
MaeI	CTAG	3 cut(s)	369, 383, 462
MaeIII	GTNAC	3 cut(s)	5, 698, 784
MalI	GATC	5 cut(s)	376, 430, 762, 1086, 1134
MboI	GATC	5 cut(s)	374, 428, 760, 1084, 1132
MflI	RGATCY	2 cut(s)	374, 760
MhlI	GDGCHC	2 cut(s)	676, 891
MluCI	AATT	1 cut(s)	540
MmeI	TCCRAC	2 cut(s)	194, 620
Mph1103I	ATGCAT	1 cut(s)	409
MroI	TCCGGA	1 cut(s)	70
MseI	TTAA	5 cut(s)	435, 647, 819, 897, 1052
MslI	CAYNNNNRTG	7 cut(s)	135, 156, 483, 838, 965, 1074, 1160
MspA1I	CMGCKG	1 cut(s)	1151
MspI	CCGG	2 cut(s)	71, 1119
MspR9I	CCNGG	2 cut(s)	686, 771
MvaI	CCWGG	2 cut(s)	686, 771
MwoI	GCNNNNNNNGC	1 cut(s)	923
NdeII	GATC	5 cut(s)	374, 428, 760, 1084, 1132
NlaIV	GGNNCC	3 cut(s)	90, 376, 1167
NmuCI	GTSAC	3 cut(s)	5, 698, 784
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	1 cut(s)	964
PagI	TCATGA	2 cut(s)	478, 1135
PciI	ACATGT	1 cut(s)	960
PciSI	GCTCTTC	1 cut(s)	933
PkrI	GCNGC	2 cut(s)	25, 262
PpuMI	RGGWCCY	1 cut(s)	89
PscI	ACATGT	1 cut(s)	960
PshBI	ATTAAT	1 cut(s)	435
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	2 cut(s)	684, 769
PspGI	CCWGG	2 cut(s)	684, 769
PspN4I	GGNNCC	3 cut(s)	90, 376, 1167
PspPI	GGNCC	2 cut(s)	89, 392
PspPPI	RGGWCCY	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	2 cut(s)	374, 760
PvuII	CAGCTG	1 cut(s)	1151
RseI	CAYNNNNRTG	7 cut(s)	135, 156, 483, 838, 965, 1074, 1160
SapI	GCTCTTC	1 cut(s)	933
SaqAI	TTAA	5 cut(s)	435, 647, 819, 897, 1052
SatI	GCNGC	2 cut(s)	24, 261
Sau3AI	GATC	5 cut(s)	374, 428, 760, 1084, 1132
Sau96I	GGNCC	2 cut(s)	89, 392
ScrFI	CCNGG	2 cut(s)	686, 771
SduI	GDGCHC	2 cut(s)	676, 891
SfaNI	GCATC	6 cut(s)	148, 394, 416, 475, 913, 957
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	2 cut(s)	89, 392
SmiMI	CAYNNNNRTG	7 cut(s)	135, 156, 483, 838, 965, 1074, 1160
Sse9I	AATT	1 cut(s)	540
SsiI	CCGC	1 cut(s)	24
SspI	AATATT	1 cut(s)	190
SspMI	CTAG	3 cut(s)	369, 383, 462
StyD4I	CCNGG	2 cut(s)	684, 769
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	2 cut(s)	623, 704
TaqI	TCGA	7 cut(s)	431, 807, 849, 860, 891, 903, 965
TasI	AATT	1 cut(s)	540
TauI	GCSGC	1 cut(s)	26
Tru1I	TTAA	5 cut(s)	435, 647, 819, 897, 1052
Tru9I	TTAA	5 cut(s)	435, 647, 819, 897, 1052
TscAI	CASTG	4 cut(s)	60, 628, 742, 1129
TseFI	GTSAC	3 cut(s)	5, 698, 784
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	3 cut(s)	5, 698, 784
TspRI	CASTG	4 cut(s)	60, 628, 742, 1129
VpaK11BI	GGWCC	2 cut(s)	89, 392
VspI	ATTAAT	1 cut(s)	435
XceI	RCATGY	1 cut(s)	964
XspI	CTAG	3 cut(s)	369, 383, 462
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.