Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001891

Physical Location & Seq

Genomic Coordinates Forward (+)

25914976 .. 25918007

Gene Structure 3032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGGATTTAAGTGCGAAAGATGAGTTTTCAGCAGAGAAGAGGAATCCTGATAACTATGATTCTGTTAATAATCCGTCTGGAGATTGGCGAGTTGATTCATATCCTTCAGAGAATCTGATTTCAGCTGGTCCTGCGTCTTGTTCTCCTTCTCAGATGATGGATTCATTTGGGCAAACTCTTTGGTATGATCCCACGAGTGTTCAGGCTGTTGGTTATGCCGGTTTTAATGGTGGTAATGCTTCGTCTTCTTCGTTTAGGGGTAGTATTGATAGATCTCTTGAAATGGGTTGGAATCTGCCTAATTTGTTGCCTCCTAAAGGCAATGGTCTTTTCTTACCGAATGCGAGTAGTTTCCTTCCTCCGAGTATGGCTCAGTTCCCGGCTGATTCAGGTTTTATAGAGCGTGCAGCGAGGTTTTCGCTCTTTAGCGGTGGGAATTTTAGTGATATGGTGAATCAACCACTTGGGAATTCTGAGGCTATTGGTTTGTTTCTTCAAGGTGGTGGAACAATGCAAGGGCAGTGTCAAAGTAATGAACTTAATGTTGGTGAACCTCACAATGATGTATCTGTAGCAGTGAAAGAATCAACTGTTAGATCTAGTGAACAAGCTAAACCGAATGTTCCTGGATCGGGCAATGTATCCGAGGATACTCAGTCTAGTGGTGGTAATGGTCAGAAAGGCAGAGAAACCTCTTCCAACACAAAGAAGAGGAAAAGAAATGGGCAGAAGAACTCTGAAGCAGCTCAATCACACAGATCCCAGCAGTCTGAGGAAGAACCAGACAACAATGGTGATGAAAAGCGCAATGATGAGCAAAGTCCAAATTCACCTGGAAAGAAGTCAAACAGTGGGAAACAACAGGGCAAACAAAGTTCTGATCCTCCAAAAGATGGATATATTCATGTACGGGCACGAAGAGGCCAGGCCACAAATAGCCATAGTCTTGCAGAAAGAGTTAGGAGAGAAAAAATTAGTGAAAGGATGAAGTTTCTTCAAGATCTAGTACCGGGTTGCAACAAGGTGACTGGGAAGGCAGTTATGCTTGACGAAATCATAAACTACGTACAATCACTACAACGCCAAGTTGAGTTTTTATCGATGAAACTTGCAACTGTGAACCCACAAATGGACTTTAACCTTGAAGGTCTTCTTGCAAAAGATGCACTTCAACTACGAGCTGGTTCTTCATCTACAACACCATTCCCACCAAATATGTCAATGGCTTATCCTCCTCTACCTCATGGATTCATGCAACAAACTCTTTCCAGCATTGGAAGGACCATTACCTCTCCATTGTCTCCTATGAATGGTGGATTCAAGCGACAGGAAACAAATGGATGGGAGGGTGATTTGCAAAATGTGATCCACATTAACTATGGAGCTGGTGATGTCACACCTGACCCTCAAGCAGCAGCTACAGCATCTCTTCCAGCTGCAAATATGAAGGTTGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

486

Amino Acids

52.39

Weight (kDa)

5.82

Isoelectric Point (pI)

59.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	312 - 360	1.1e-06	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	318 - 363	2.6e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26260 AT1G26260 AT1G26260 AT1G26260 AT1G26260 AT1G26260 AT1G68920 AT1G68920 AT1G68920 AT1G68920
fragaria_vesca	FvH4_4g28910 FvH4_4g28910 FvH4_4g28910
malus_domestica	MD13G1054700.v1.1 MD16G1053600.v1.1
prunus_persica	Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1
pyrus_communis	pycom13g04850 pycom16g04670
rosa_chinensis	RchiOBHm_Chr4g0437041
rosa_laevigata	RLG00000006476
rosa_multiflora	Rmu_sc0003436.1_g000014 Rmu_sc0008325.1_g000009
rosa_roxburghii	Rroxscaffold_5G00378110
rosa_rugosa	Rorug04G0297900 Rorug04G0297900 Rorug04G0297900
rosa_samantha	Rh4AG352300 Rh4BG361500 Rh4CG375800 Rh4DG355700
rosa_wichuraiana	Rw4G030840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	893
AciI	CCGC	1 cut(s)	429
AclWI	GGATC	5 cut(s)	182, 637, 753, 875, 1360
AcsI	RAATTY	3 cut(s)	436, 469, 826
AcuI	CTGAAG	2 cut(s)	90, 759
AfaI	GTAC	3 cut(s)	909, 1008, 1068
AfiI	CCNNNNNNNGG	5 cut(s)	317, 632, 893, 1129, 1310
AgsI	TTSAA	6 cut(s)	281, 497, 998, 1145, 1172, 1321
AjnI	CCWGG	3 cut(s)	625, 832, 924
AjuI	GAANNNNNNNTTGG	2 cut(s)	528, 560
AluBI	AGCT	7 cut(s)	125, 611, 746, 1181, 1385, 1418, 1436
AluI	AGCT	7 cut(s)	125, 611, 746, 1181, 1385, 1418, 1436
Alw26I	GTCTC	1 cut(s)	1305
AlwI	GGATC	5 cut(s)	182, 637, 753, 875, 1360
AoxI	GGCC	2 cut(s)	922, 927
ApeKI	GCWGC	5 cut(s)	407, 743, 1412, 1415, 1436
ApoI	RAATTY	3 cut(s)	436, 469, 826
Asp700I	GAANNNNTTC	1 cut(s)	1149
AspLEI	GCGC	1 cut(s)	807
AspS9I	GGNCC	2 cut(s)	128, 1281
AsuC2I	CCSGG	2 cut(s)	380, 1011
AsuHPI	GGTGA	7 cut(s)	463, 560, 806, 822, 1036, 1361, 1400
AvaII	GGWCC	2 cut(s)	128, 1281
BaeGI	GKGCMC	1 cut(s)	916
BarI	GAAGNNNNNNTAC	2 cut(s)	1270, 1302
BauI	CACGAG	1 cut(s)	193
BbsI	GAAGAC	2 cut(s)	237, 1142
BbvI	GCAGC	5 cut(s)	419, 755, 1423, 1424, 1427
BccI	CCATC	3 cut(s)	151, 887, 1335
BciT130I	CCWGG	3 cut(s)	627, 834, 926
BciVI	GTATCC	2 cut(s)	643, 652
BcnI	CCSGG	2 cut(s)	380, 1011
BcoDI	GTCTC	1 cut(s)	1305
BfaI	CTAG	3 cut(s)	600, 660, 1004
BfmI	CTRYAG	2 cut(s)	570, 1419
BfuI	GTATCC	2 cut(s)	643, 652
BglII	AGATCT	3 cut(s)	272, 596, 1000
BisI	GCNGC	5 cut(s)	408, 744, 1413, 1416, 1437
BlsI	GCNGC	5 cut(s)	409, 745, 1414, 1417, 1438
Bme1390I	CCNGG	5 cut(s)	380, 627, 834, 926, 1011
Bme18I	GGWCC	2 cut(s)	128, 1281
BmgT120I	GGNCC	2 cut(s)	128, 1281
BmrFI	CCNGG	5 cut(s)	380, 627, 834, 926, 1011
BmrI	ACTGGG	1 cut(s)	1038
BmsI	GCATC	2 cut(s)	1153, 1433
BmuI	ACTGGG	1 cut(s)	1038
BpiI	GAAGAC	2 cut(s)	237, 1142
BplI	GAGNNNNNCTC	2 cut(s)	355, 387
BpmI	CTGGAG	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	1392
BpuMI	CCSGG	2 cut(s)	380, 1011
Bsa29I	ATCGAT	1 cut(s)	1100
BsaAI	YACGTR	1 cut(s)	1066
BsaBI	GATNNNNATC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	645
Bsc4I	CCNNNNNNNGG	5 cut(s)	317, 632, 893, 1129, 1310
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	1033
Bse3DI	GCAATG	3 cut(s)	328, 643, 814
Bse8I	GATNNNNATC	1 cut(s)	99
BseBI	CCWGG	3 cut(s)	627, 834, 926
BseCI	ATCGAT	1 cut(s)	1100
BseDI	CCNNGG	1 cut(s)	645
BseGI	GGATG	2 cut(s)	990, 1346
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	5 cut(s)	317, 632, 893, 1129, 1310
BseMI	GCAATG	3 cut(s)	328, 643, 814
BseMII	CTCAG	5 cut(s)	164, 386, 465, 668, 762
BseNI	ACTGG	1 cut(s)	1033
BseRI	GAGGAG	1 cut(s)	1224
BseSI	GKGCMC	1 cut(s)	916
BseXI	GCAGC	5 cut(s)	419, 755, 1423, 1424, 1427
BseYI	CCCAGC	1 cut(s)	762
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	2 cut(s)	924, 929
BshVI	ATCGAT	1 cut(s)	1100
BsiSI	CCGG	3 cut(s)	219, 380, 1010
BslI	CCNNNNNNNGG	5 cut(s)	317, 632, 893, 1129, 1310
BsmAI	GTCTC	1 cut(s)	1305
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	924, 929
Bsp1286I	GDGCHC	1 cut(s)	916
Bsp143I	GATC	8 cut(s)	187, 272, 596, 629, 758, 880, 1000, 1365
BspACI	CCGC	1 cut(s)	429
BspANI	GGCC	2 cut(s)	924, 929
BspCNI	CTCAG	5 cut(s)	163, 385, 466, 667, 763
BspDI	ATCGAT	1 cut(s)	1100
BspPI	GGATC	5 cut(s)	182, 637, 753, 875, 1360
BsrDI	GCAATG	3 cut(s)	328, 643, 814
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	1033
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	645
BssMI	GATC	8 cut(s)	187, 272, 596, 629, 758, 880, 1000, 1365
BssSI	CACGAG	1 cut(s)	193
Bst2BI	CACGAG	1 cut(s)	193
Bst2UI	CCWGG	3 cut(s)	627, 834, 926
Bst4CI	ACNGT	3 cut(s)	592, 851, 1117
Bst6I	CTCTTC	5 cut(s)	32, 700, 704, 913, 1434
BstAPI	GCANNNNNTGC	1 cut(s)	1163
BstBAI	YACGTR	1 cut(s)	1066
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	5 cut(s)	150, 372, 474, 654, 771
BstENI	CCTNNNNNAGG	1 cut(s)	315
BstF5I	GGATG	2 cut(s)	990, 1346
BstHHI	GCGC	1 cut(s)	807
BstKTI	GATC	8 cut(s)	190, 275, 599, 632, 761, 883, 1003, 1368
BstMAI	GTCTC	1 cut(s)	1305
BstMBI	GATC	8 cut(s)	187, 272, 596, 629, 758, 880, 1000, 1365
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 1163, 1421
BstNI	CCWGG	3 cut(s)	627, 834, 926
BstSCI	CCNGG	5 cut(s)	378, 625, 832, 924, 1009
BstSFI	CTRYAG	2 cut(s)	570, 1419
BstSLI	GKGCMC	1 cut(s)	916
BstSNI	TACGTA	1 cut(s)	1066
BstV1I	GCAGC	5 cut(s)	419, 755, 1423, 1424, 1427
BstV2I	GAAGAC	2 cut(s)	237, 1142
BstX2I	RGATCY	4 cut(s)	272, 596, 758, 1000
BstYI	RGATCY	4 cut(s)	272, 596, 758, 1000
Bsu15I	ATCGAT	1 cut(s)	1100
BsuI	GTATCC	2 cut(s)	643, 652
BsuRI	GGCC	2 cut(s)	924, 929
BsuTUI	ATCGAT	1 cut(s)	1100
BtsCI	GGATG	2 cut(s)	990, 1346
BtsI	GCAGTG	2 cut(s)	527, 582
BtsIMutI	CAGTG	3 cut(s)	527, 582, 856
Cac8I	GCNNGC	1 cut(s)	405
CfoI	GCGC	1 cut(s)	807
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	128, 1281
ClaI	ATCGAT	1 cut(s)	1100
CseI	GACGC	1 cut(s)	123
Csp6I	GTAC	3 cut(s)	908, 1007, 1067
CviAII	CATG	4 cut(s)	905, 1244, 1252, 1458
CviQI	GTAC	3 cut(s)	908, 1007, 1067
DdeI	CTNAG	5 cut(s)	150, 372, 474, 654, 771
DpnI	GATC	8 cut(s)	189, 274, 598, 631, 760, 882, 1002, 1367
DpnII	GATC	8 cut(s)	187, 272, 596, 629, 758, 880, 1000, 1365
Eam1104I	CTCTTC	5 cut(s)	32, 700, 704, 913, 1434
EarI	CTCTTC	5 cut(s)	32, 700, 704, 913, 1434
Eco105I	TACGTA	1 cut(s)	1066
Eco47I	GGWCC	2 cut(s)	128, 1281
Eco57I	CTGAAG	2 cut(s)	90, 759
EcoNI	CCTNNNNNAGG	1 cut(s)	315
EcoRI	GAATTC	1 cut(s)	469
EcoRII	CCWGG	3 cut(s)	625, 832, 924
FaeI	CATG	4 cut(s)	908, 1247, 1255, 1461
FalI	AAGNNNNNCTT	4 cut(s)	1137, 1169, 1152, 1184
FatI	CATG	4 cut(s)	904, 1243, 1251, 1457
Fnu4HI	GCNGC	5 cut(s)	408, 744, 1413, 1416, 1437
FokI	GGATG	2 cut(s)	997, 1353
Fsp4HI	GCNGC	5 cut(s)	408, 744, 1413, 1416, 1437
FspBI	CTAG	3 cut(s)	600, 660, 1004
GlaI	GCGC	1 cut(s)	806
GluI	GCNGC	5 cut(s)	408, 744, 1413, 1416, 1437
GsaI	CCCAGC	1 cut(s)	766
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	924, 929
HapII	CCGG	3 cut(s)	219, 380, 1010
HgaI	GACGC	1 cut(s)	123
HhaI	GCGC	1 cut(s)	807
Hin1II	CATG	4 cut(s)	908, 1247, 1255, 1461
Hin6I	GCGC	1 cut(s)	805
HinP1I	GCGC	1 cut(s)	805
HpaII	CCGG	3 cut(s)	219, 380, 1010
HphI	GGTGA	7 cut(s)	463, 560, 806, 822, 1036, 1361, 1400
Hpy166II	GTNNAC	3 cut(s)	551, 605, 1120
Hpy188III	TCNNGA	4 cut(s)	47, 78, 278, 998
Hpy8I	GTNNAC	3 cut(s)	551, 605, 1120
HpyAV	CCTTC	7 cut(s)	114, 156, 365, 1027, 1139, 1272, 1441
HpyCH4III	ACNGT	3 cut(s)	592, 851, 1117
HpyCH4IV	ACGT	1 cut(s)	1065
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 1163, 1421
HpyF3I	CTNAG	5 cut(s)	150, 372, 474, 654, 771
HpySE526I	ACGT	1 cut(s)	1065
Hsp92II	CATG	4 cut(s)	908, 1247, 1255, 1461
HspAI	GCGC	1 cut(s)	805
Kzo9I	GATC	8 cut(s)	187, 272, 596, 629, 758, 880, 1000, 1365
LmnI	GCTCC	1 cut(s)	1382
Lsp1109I	GCAGC	5 cut(s)	419, 755, 1423, 1424, 1427
LweI	GCATC	2 cut(s)	1153, 1433
MaeI	CTAG	3 cut(s)	600, 660, 1004
MaeII	ACGT	1 cut(s)	1065
MaeIII	GTNAC	2 cut(s)	1024, 1393
MalI	GATC	8 cut(s)	189, 274, 598, 631, 760, 882, 1002, 1367
MboI	GATC	8 cut(s)	187, 272, 596, 629, 758, 880, 1000, 1365
MflI	RGATCY	4 cut(s)	272, 596, 758, 1000
MhlI	GDGCHC	1 cut(s)	916
MluCI	AATT	5 cut(s)	301, 436, 469, 826, 972
MmeI	TCCRAC	2 cut(s)	269, 723
MroXI	GAANNNNTTC	1 cut(s)	1149
MseI	TTAA	6 cut(s)	8, 66, 225, 540, 1137, 1374
MslI	CAYNNNNRTG	1 cut(s)	561
MspA1I	CMGCKG	2 cut(s)	125, 1436
MspI	CCGG	3 cut(s)	219, 380, 1010
MspR9I	CCNGG	5 cut(s)	380, 627, 834, 926, 1011
Mva1269I	GAATGC	1 cut(s)	346
MvaI	CCWGG	3 cut(s)	627, 834, 926
MwoI	GCNNNNNNNGC	3 cut(s)	131, 1163, 1421
NciI	CCSGG	2 cut(s)	380, 1011
NdeII	GATC	8 cut(s)	187, 272, 596, 629, 758, 880, 1000, 1365
NlaIII	CATG	4 cut(s)	908, 1247, 1255, 1461
NmuCI	GTSAC	2 cut(s)	1024, 1393
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PctI	GAATGC	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	1149
PflMI	CCANNNNNTGG	1 cut(s)	893
PfoI	TCCNGGA	1 cut(s)	625
PkrI	GCNGC	5 cut(s)	409, 745, 1414, 1417, 1438
Ppu21I	YACGTR	1 cut(s)	1066
Psp6I	CCWGG	3 cut(s)	625, 832, 924
PspFI	CCCAGC	1 cut(s)	762
PspGI	CCWGG	3 cut(s)	625, 832, 924
PspPI	GGNCC	2 cut(s)	128, 1281
PsuI	RGATCY	4 cut(s)	272, 596, 758, 1000
PvuII	CAGCTG	2 cut(s)	125, 1436
RsaI	GTAC	3 cut(s)	909, 1008, 1068
RsaNI	GTAC	3 cut(s)	908, 1007, 1067
RseI	CAYNNNNRTG	1 cut(s)	561
SaqAI	TTAA	6 cut(s)	8, 66, 225, 540, 1137, 1374
SatI	GCNGC	5 cut(s)	408, 744, 1413, 1416, 1437
Sau3AI	GATC	8 cut(s)	187, 272, 596, 629, 758, 880, 1000, 1365
Sau96I	GGNCC	2 cut(s)	128, 1281
ScrFI	CCNGG	5 cut(s)	380, 627, 834, 926, 1011
SduI	GDGCHC	1 cut(s)	916
SfaNI	GCATC	2 cut(s)	1153, 1433
SfcI	CTRYAG	2 cut(s)	570, 1419
SinI	GGWCC	2 cut(s)	128, 1281
SmiMI	CAYNNNNRTG	1 cut(s)	561
SmlI	CTYRAG	1 cut(s)	1407
SmoI	CTYRAG	1 cut(s)	1407
SnaBI	TACGTA	1 cut(s)	1066
Sse9I	AATT	5 cut(s)	301, 436, 469, 826, 972
SsiI	CCGC	1 cut(s)	429
SspMI	CTAG	3 cut(s)	600, 660, 1004
StyD4I	CCNGG	5 cut(s)	378, 625, 832, 924, 1009
TaaI	ACNGT	3 cut(s)	592, 851, 1117
TaiI	ACGT	1 cut(s)	1068
TaqI	TCGA	1 cut(s)	1100
TasI	AATT	5 cut(s)	301, 436, 469, 826, 972
Tru1I	TTAA	6 cut(s)	8, 66, 225, 540, 1137, 1374
Tru9I	TTAA	6 cut(s)	8, 66, 225, 540, 1137, 1374
TscAI	CASTG	3 cut(s)	527, 582, 856
TseFI	GTSAC	2 cut(s)	1024, 1393
TseI	GCWGC	5 cut(s)	407, 743, 1412, 1415, 1436
Tsp45I	GTSAC	2 cut(s)	1024, 1393
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	3 cut(s)	527, 582, 856
Van91I	CCANNNNNTGG	1 cut(s)	893
VpaK11BI	GGWCC	2 cut(s)	128, 1281
XagI	CCTNNNNNAGG	1 cut(s)	315
XapI	RAATTY	3 cut(s)	436, 469, 826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1376
XmnI	GAANNNNTTC	1 cut(s)	1149
XspI	CTAG	3 cut(s)	600, 660, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.