Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001891

Physical Location & Seq

Genomic Coordinates Forward (+)

66123187 .. 66125539

Gene Structure 2353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG352300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1647 bp

ATGGATATGAGTGAGAAAGATAAATTTGAATTGGAGAATAGGAATGAGGAGCCTATGAATTATTCACCTTCTATGACCTATGGGTTTGGTGGCTCCAATCTCACAAATGCATCTATGGGTTTGGTTCCTACTGGGAATTCTATGGCAGATAGTAAAGAGGATCTGATTGGTTCTTCTTCACAACCCTCTGCTTCAATGGTGGAGTCATTTAGCCCAGCGCTTTGGGACCACCCAACCAATGCACAAAACATGGGTTTTTGTGACATTAATGGTCAGACCAGTGCAAGCACTTCAAACACAATGGGAATTAGAAAAGGGATTCCTGCCTCTTTGAGAAGTGGGATTGATAGACCACTTGATATGTGTTGGAACCCACCAAATTCGATGTTGAAAGGGGGAATTTTCTTACCAAATGGGCCGGCAGGGATGCTACCGCAGAGCTTGTCTCAGTTTCCAGCTGATTCTGGGTTCATTGAGCGTGCTGCTAGGTTCTCGTGCTTCAATGGTGGGAATTTTAGTGATATGATGAACCCTTTTGTTGTTCCTGAATCAATGAGTCTTTATTCTAAGGGTGGGGGAATGATGCAATGGGCTGTGGCAGGCCAGGGGACTAAAGCAATGTCCAGCAATGAGCTCAATCAAGTAGGTGATGCTTCGAACGAGGTTTCTTTGCCTATTGATCATGGGGCAACTGATGGGAGCCCACTTAAGAATGAGAAGAAAAGTGAGAGTCTTGTGAAGTCTCACGATGAAGCAAAAAATGCAATGGATGGGTCTGGTAATGAGTCTGATGAAGCCGATTTCAGTGGTGGTGCGGAGGAGCCGTCTATGATGGAGGATACAGGGGTGGGACCTTCTTCTAAGGGCTCTAAGAAAAGGAAAAGGAGTGGACAGGCTAATGAACTTGATCAAACCAAAATAGCTGCACATCAATCCGTTGAATCAACAAAGGATGATACTGAAATGGTACAGAAGGGAGCTTCAACTACCAACAAGACTACTGGAAGACTTGTCAAACAAGGGTCTCAGACGTCTGATCCACCAAAAGAAGAATATATTCATGTTAGGGCTCGAAGAGGCCAAGCAACAAATAGCCATAGTCTTGCAGAAAGAGTCAGAAGGGAGAAGATCAGTGAGAGGATGAAGTTTCTTCAAGATCTTGTACCTGGATGTAGCAAGGTAACTGGGAAGGCAGTGATGCTGGACGAAATCATTAATTATGTACAGTCATTGCAACGGCAGGTTGAGTTTTTGTCAATGAAACTTGCAACAGTGAATCCACGATTGGATTTAAACATTGAAAGCCTCCTGGAAAAAGATATCCTTCAGTCACGAGTTGGACCTTCATCTTCGATGGGATTTTCTCCGGATATGCATATTGCCTATCCTCCACTTCATCCATCTCAGTCGGGACTTATTCAAGCAGGCCTTCCTGGGATGGGGAGCTCTTCTGATTTGCTTCGAAGGGCCATGGGTTCCCAAATGGCACCTATGACTGGAGGATTCAAGGAGCCTTCCCAGCTATCAAATGTGTGGGAGGATGAGCTCCAGAATGTTTTCCAAATGAGCTATGGAACTGGAACTCCCTCCAATAGCCAAGATGTCGATGGATCTGGGACACCAGGCCATATGAAAGTTGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009889 GO:0009909 GO:0009911 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

548

Amino Acids

58.91

Weight (kDa)

5.2

Isoelectric Point (pI)

51.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	364 - 412	1.7e-06	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	370 - 415	3.6e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26260 AT1G26260 AT1G26260 AT1G26260 AT1G26260 AT1G26260 AT1G68920 AT1G68920 AT1G68920 AT1G68920
fragaria_vesca	FvH4_4g28910 FvH4_4g28910 FvH4_4g28910
malus_domestica	MD13G1054700.v1.1 MD16G1053600.v1.1
prunus_persica	Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1 Prupe.1G297200_v2.0.a1
pyrus_communis	pycom13g04850 pycom16g04670
rosa_chinensis	RchiOBHm_Chr4g0437041
rosa_laevigata	RLG00000006476
rosa_multiflora	Rmu_sc0003436.1_g000014 Rmu_sc0008325.1_g000009
rosa_roxburghii	Rroxscaffold_5G00378110
rosa_rugosa	Rorug04G0297900 Rorug04G0297900 Rorug04G0297900
rosa_samantha	Rh4AG352300 Rh4BG361500 Rh4CG375800 Rh4DG355700
rosa_wichuraiana	Rw4G030840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1034
Acc36I	ACCTGC	1 cut(s)	1231
AccB1I	GGYRCC	1 cut(s)	1486
AccIII	TCCGGA	1 cut(s)	1366
AciI	CCGC	2 cut(s)	434, 815
AclWI	GGATC	3 cut(s)	168, 1031, 1618
AcsI	RAATTY	5 cut(s)	23, 136, 379, 399, 511
AcuI	CTGAAG	1 cut(s)	1310
AcyI	GRCGYC	1 cut(s)	1031
AfaI	GTAC	3 cut(s)	969, 1164, 1224
AfeI	AGCGCT	1 cut(s)	219
AfiI	CCNNNNNNNGG	2 cut(s)	1439, 1496
AflII	CTTAAG	1 cut(s)	707
AjnI	CCWGG	5 cut(s)	603, 1165, 1308, 1432, 1621
AjuI	GAANNNNNNNTTGG	2 cut(s)	1268, 1300
AloI	GAACNNNNNNTCC	2 cut(s)	1567, 1599
AluBI	AGCT	9 cut(s)	441, 458, 634, 923, 980, 1446, 1522, 1546, 1569
AluI	AGCT	9 cut(s)	441, 458, 634, 923, 980, 1446, 1522, 1546, 1569
Alw21I	GWGCWC	3 cut(s)	636, 1448, 1548
Alw26I	GTCTC	3 cut(s)	450, 747, 1029
AlwI	GGATC	3 cut(s)	168, 1031, 1618
Aor13HI	TCCGGA	1 cut(s)	1366
Aor51HI	AGCGCT	1 cut(s)	219
AoxI	GGCC	6 cut(s)	416, 601, 1078, 1426, 1467, 1624
ApeKI	GCWGC	2 cut(s)	482, 923
ApoI	RAATTY	5 cut(s)	23, 136, 379, 399, 511
AseI	ATTAAT	2 cut(s)	267, 1215
Asp700I	GAANNNNTTC	2 cut(s)	1056, 1556
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	5 cut(s)	226, 416, 851, 1340, 1467
AsuHPI	GGTGA	2 cut(s)	57, 659
AsuII	TTCGAA	2 cut(s)	656, 1462
AvaII	GGWCC	3 cut(s)	226, 851, 1340
BaeI	ACNNNNGTAYC	2 cut(s)	831, 864
BanI	GGYRCC	1 cut(s)	1486
BanII	GRGCYC	6 cut(s)	636, 704, 869, 1072, 1448, 1548
BauI	CACGAG	2 cut(s)	493, 1332
BbsI	GAAGAC	1 cut(s)	1012
Bbv12I	GWGCWC	3 cut(s)	636, 1448, 1548
BbvI	GCAGC	2 cut(s)	469, 910
BccI	CCATC	7 cut(s)	689, 764, 826, 1348, 1408, 1432, 1601
BceAI	ACGGC	2 cut(s)	808, 1253
BciT130I	CCWGG	5 cut(s)	605, 1167, 1310, 1434, 1623
BciVI	GTATCC	1 cut(s)	832
BclI	TGATCA	2 cut(s)	679, 907
BcoDI	GTCTC	3 cut(s)	450, 747, 1029
BfaI	CTAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	221
BfrI	CTTAAG	1 cut(s)	707
BfuAI	ACCTGC	1 cut(s)	1231
BfuI	GTATCC	1 cut(s)	832
BglII	AGATCT	1 cut(s)	1156
BisI	GCNGC	2 cut(s)	483, 924
BlsI	GCNGC	2 cut(s)	484, 925
Bme1390I	CCNGG	5 cut(s)	605, 1167, 1310, 1434, 1623
Bme18I	GGWCC	3 cut(s)	226, 851, 1340
BmgT120I	GGNCC	5 cut(s)	226, 416, 851, 1340, 1467
BmrFI	CCNGG	5 cut(s)	605, 1167, 1310, 1434, 1623
BmrI	ACTGGG	2 cut(s)	141, 1194
BmsI	GCATC	5 cut(s)	119, 417, 573, 640, 1188
BmuI	ACTGGG	2 cut(s)	141, 1194
BpiI	GAAGAC	1 cut(s)	1012
BplI	GAGNNNNNCTC	2 cut(s)	430, 462
BpmI	CTGGAG	2 cut(s)	1518, 1532
Bpu14I	TTCGAA	2 cut(s)	656, 1462
BsaHI	GRCGYC	1 cut(s)	1031
BsaI	GGTCTC	1 cut(s)	1029
BsaJI	CCNNGG	3 cut(s)	604, 1433, 1470
BsaWI	WCCGGW	1 cut(s)	1366
BsaXI	ACNNNNNCTCC	4 cut(s)	809, 839, 1567, 1597
Bsc4I	CCNNNNNNNGG	2 cut(s)	1439, 1496
Bse118I	RCCGGY	1 cut(s)	418
Bse1I	ACTGG	6 cut(s)	136, 279, 1006, 1189, 1501, 1582
Bse3DI	GCAATG	5 cut(s)	593, 624, 634, 771, 1229
BseAI	TCCGGA	1 cut(s)	1366
BseBI	CCWGG	5 cut(s)	605, 1167, 1310, 1434, 1623
BseDI	CCNNGG	3 cut(s)	604, 1433, 1470
BseGI	GGATG	8 cut(s)	432, 775, 958, 1146, 1175, 1396, 1443, 1546
BseLI	CCNNNNNNNGG	2 cut(s)	1439, 1496
BseMI	GCAATG	5 cut(s)	593, 624, 634, 771, 1229
BseMII	CTCAG	3 cut(s)	461, 1040, 1418
BseNI	ACTGG	6 cut(s)	136, 279, 1006, 1189, 1501, 1582
BseRI	GAGGAG	2 cut(s)	62, 833
BseXI	GCAGC	2 cut(s)	469, 910
BseYI	CCCAGC	2 cut(s)	214, 1518
BsgI	GTGCAG	1 cut(s)	909
BshFI	GGCC	6 cut(s)	418, 603, 1080, 1428, 1469, 1626
BshNI	GGYRCC	1 cut(s)	1486
BsiHKAI	GWGCWC	3 cut(s)	636, 1448, 1548
BsiSI	CCGG	2 cut(s)	419, 1367
BslFI	GGGAC	5 cut(s)	239, 622, 864, 1425, 1630
BslI	CCNNNNNNNGG	2 cut(s)	1439, 1496
BsmAI	GTCTC	3 cut(s)	450, 747, 1029
BsmFI	GGGAC	5 cut(s)	239, 622, 864, 1425, 1630
BsnI	GGCC	6 cut(s)	418, 603, 1080, 1428, 1469, 1626
Bso31I	GGTCTC	1 cut(s)	1029
Bsp119I	TTCGAA	2 cut(s)	656, 1462
Bsp1286I	GDGCHC	6 cut(s)	636, 704, 869, 1072, 1448, 1548
Bsp13I	TCCGGA	1 cut(s)	1366
Bsp1407I	TGTACA	1 cut(s)	1222
Bsp143I	GATC	7 cut(s)	160, 679, 907, 1036, 1128, 1156, 1610
Bsp19I	CCATGG	1 cut(s)	1470
BspACI	CCGC	2 cut(s)	434, 815
BspANI	GGCC	6 cut(s)	418, 603, 1080, 1428, 1469, 1626
BspCNI	CTCAG	3 cut(s)	460, 1039, 1417
BspEI	TCCGGA	1 cut(s)	1366
BspMI	ACCTGC	1 cut(s)	1231
BspPI	GGATC	3 cut(s)	168, 1031, 1618
BspQI	GCTCTTC	1 cut(s)	1453
BspT104I	TTCGAA	2 cut(s)	656, 1462
BspT107I	GGYRCC	1 cut(s)	1486
BspTI	CTTAAG	1 cut(s)	707
BspTNI	GGTCTC	1 cut(s)	1029
BsrDI	GCAATG	5 cut(s)	593, 624, 634, 771, 1229
BsrFI	RCCGGY	1 cut(s)	418
BsrGI	TGTACA	1 cut(s)	1222
BsrI	ACTGG	6 cut(s)	136, 279, 1006, 1189, 1501, 1582
BssAI	RCCGGY	1 cut(s)	418
BssECI	CCNNGG	3 cut(s)	604, 1433, 1470
BssMI	GATC	7 cut(s)	160, 679, 907, 1036, 1128, 1156, 1610
BssNI	GRCGYC	1 cut(s)	1031
BssSI	CACGAG	2 cut(s)	493, 1332
BssT1I	CCWWGG	1 cut(s)	1470
Bst2BI	CACGAG	2 cut(s)	493, 1332
Bst2UI	CCWGG	5 cut(s)	605, 1167, 1310, 1434, 1623
Bst4CI	ACNGT	2 cut(s)	1227, 1273
Bst6I	CTCTTC	2 cut(s)	1069, 1453
BstACI	GRCGYC	1 cut(s)	1031
BstAFI	CTTAAG	1 cut(s)	707
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstAUI	TGTACA	1 cut(s)	1222
BstBI	TTCGAA	2 cut(s)	656, 1462
BstC8I	GCNNGC	5 cut(s)	286, 420, 480, 601, 1426
BstDEI	CTNAG	6 cut(s)	447, 567, 861, 870, 1026, 1404
BstDSI	CCRYGG	1 cut(s)	1470
BstF5I	GGATG	8 cut(s)	432, 775, 958, 1146, 1175, 1396, 1443, 1546
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	7 cut(s)	163, 682, 910, 1039, 1131, 1159, 1613
BstMAI	GTCTC	3 cut(s)	450, 747, 1029
BstMBI	GATC	7 cut(s)	160, 679, 907, 1036, 1128, 1156, 1610
BstMWI	GCNNNNNNNGC	2 cut(s)	761, 1519
BstNI	CCWGG	5 cut(s)	605, 1167, 1310, 1434, 1623
BstSCI	CCNGG	5 cut(s)	603, 1165, 1308, 1432, 1621
BstV1I	GCAGC	2 cut(s)	469, 910
BstV2I	GAAGAC	1 cut(s)	1012
BstX2I	RGATCY	3 cut(s)	160, 1156, 1610
BstXI	CCANNNNNNTGG	1 cut(s)	222
BstYI	RGATCY	3 cut(s)	160, 1156, 1610
BsuI	GTATCC	1 cut(s)	832
BsuRI	GGCC	6 cut(s)	418, 603, 1080, 1428, 1469, 1626
BtgI	CCRYGG	1 cut(s)	1470
BtsCI	GGATG	8 cut(s)	432, 775, 958, 1146, 1175, 1396, 1443, 1546
BtsI	GCAGTG	1 cut(s)	1200
BtsIMutI	CAGTG	5 cut(s)	286, 811, 1138, 1200, 1278
BveI	ACCTGC	1 cut(s)	1231
Cac8I	GCNNGC	5 cut(s)	286, 420, 480, 601, 1426
CfoI	GCGC	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	418
Cfr13I	GGNCC	5 cut(s)	226, 416, 851, 1340, 1467
Csp6I	GTAC	3 cut(s)	968, 1163, 1223
CviAII	CATG	4 cut(s)	250, 683, 1061, 1471
CviQI	GTAC	3 cut(s)	968, 1163, 1223
DdeI	CTNAG	6 cut(s)	447, 567, 861, 870, 1026, 1404
DpnI	GATC	7 cut(s)	162, 681, 909, 1038, 1130, 1158, 1612
DpnII	GATC	7 cut(s)	160, 679, 907, 1036, 1128, 1156, 1610
DraI	TTTAAA	1 cut(s)	1293
Eam1104I	CTCTTC	2 cut(s)	1069, 1453
EarI	CTCTTC	2 cut(s)	1069, 1453
Ecl136II	GAGCTC	3 cut(s)	634, 1446, 1546
Eco130I	CCWWGG	1 cut(s)	1470
Eco147I	AGGCCT	1 cut(s)	1428
Eco24I	GRGCYC	6 cut(s)	636, 704, 869, 1072, 1448, 1548
Eco31I	GGTCTC	1 cut(s)	1029
Eco32I	GATATC	1 cut(s)	1321
Eco47I	GGWCC	3 cut(s)	226, 851, 1340
Eco47III	AGCGCT	1 cut(s)	219
Eco53kI	GAGCTC	3 cut(s)	634, 1446, 1546
Eco57I	CTGAAG	1 cut(s)	1310
EcoICRI	GAGCTC	3 cut(s)	634, 1446, 1546
EcoO109I	RGGNCCY	1 cut(s)	851
EcoRI	GAATTC	1 cut(s)	136
EcoRII	CCWGG	5 cut(s)	603, 1165, 1308, 1432, 1621
EcoRV	GATATC	1 cut(s)	1321
EcoT14I	CCWWGG	1 cut(s)	1470
EcoT22I	ATGCAT	2 cut(s)	112, 1377
EcoT38I	GRGCYC	6 cut(s)	636, 704, 869, 1072, 1448, 1548
ErhI	CCWWGG	1 cut(s)	1470
FaeI	CATG	4 cut(s)	253, 686, 1064, 1474
FalI	AAGNNNNNCTT	5 cut(s)	1308, 1340, 1413, 1445, 1626
FaqI	GGGAC	5 cut(s)	239, 622, 864, 1425, 1630
FatI	CATG	4 cut(s)	249, 682, 1060, 1470
FauNDI	CATATG	1 cut(s)	1629
FbaI	TGATCA	2 cut(s)	679, 907
Fnu4HI	GCNGC	2 cut(s)	483, 924
FokI	GGATG	8 cut(s)	439, 782, 965, 1153, 1182, 1383, 1450, 1553
FriOI	GRGCYC	6 cut(s)	636, 704, 869, 1072, 1448, 1548
Fsp4HI	GCNGC	2 cut(s)	483, 924
FspBI	CTAG	1 cut(s)	486
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	2 cut(s)	483, 924
GsaI	CCCAGC	2 cut(s)	218, 1522
GsuI	CTGGAG	2 cut(s)	1518, 1532
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	6 cut(s)	418, 603, 1080, 1428, 1469, 1626
HapII	CCGG	2 cut(s)	419, 1367
HhaI	GCGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	1031
Hin1II	CATG	4 cut(s)	253, 686, 1064, 1474
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HpaII	CCGG	2 cut(s)	419, 1367
HphI	GGTGA	2 cut(s)	57, 659
Hpy166II	GTNNAC	1 cut(s)	890
Hpy188I	TCNGA	7 cut(s)	165, 276, 790, 1029, 1036, 1118, 1453
Hpy188III	TCNNGA	7 cut(s)	545, 746, 1154, 1332, 1367, 1410, 1549
Hpy8I	GTNNAC	1 cut(s)	890
HpyCH4III	ACNGT	2 cut(s)	1227, 1273
HpyCH4IV	ACGT	1 cut(s)	1031
HpyF10VI	GCNNNNNNNGC	2 cut(s)	761, 1519
HpyF3I	CTNAG	6 cut(s)	447, 567, 861, 870, 1026, 1404
HpySE526I	ACGT	1 cut(s)	1031
Hsp92I	GRCGYC	1 cut(s)	1031
Hsp92II	CATG	4 cut(s)	253, 686, 1064, 1474
HspAI	GCGC	1 cut(s)	218
Kpn2I	TCCGGA	1 cut(s)	1366
KroI	GCCGGC	1 cut(s)	418
KroNI	GCCGGC	1 cut(s)	420
Ksp22I	TGATCA	2 cut(s)	679, 907
Kzo9I	GATC	7 cut(s)	160, 679, 907, 1036, 1128, 1156, 1610
LguI	GCTCTTC	1 cut(s)	1453
LmnI	GCTCC	8 cut(s)	49, 98, 699, 820, 977, 1443, 1510, 1551
Lsp1109I	GCAGC	2 cut(s)	469, 910
LweI	GCATC	5 cut(s)	119, 417, 573, 640, 1188
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	1031
MaeIII	GTNAC	3 cut(s)	260, 1180, 1329
MalI	GATC	7 cut(s)	162, 681, 909, 1038, 1130, 1158, 1612
MboI	GATC	7 cut(s)	160, 679, 907, 1036, 1128, 1156, 1610
MflI	RGATCY	3 cut(s)	160, 1156, 1610
MhlI	GDGCHC	6 cut(s)	636, 704, 869, 1072, 1448, 1548
MluCI	AATT	9 cut(s)	23, 29, 58, 136, 306, 379, 399, 511, 1216
MlyI	GAGTC	5 cut(s)	212, 565, 739, 794, 1122
MmeI	TCCRAC	2 cut(s)	347, 1318
Mph1103I	ATGCAT	2 cut(s)	112, 1377
MroI	TCCGGA	1 cut(s)	1366
MroNI	GCCGGC	1 cut(s)	418
MroXI	GAANNNNTTC	2 cut(s)	1056, 1556
MseI	TTAA	4 cut(s)	267, 708, 1215, 1292
MspA1I	CMGCKG	1 cut(s)	458
MspCI	CTTAAG	1 cut(s)	707
MspI	CCGG	2 cut(s)	419, 1367
MspR9I	CCNGG	5 cut(s)	605, 1167, 1310, 1434, 1623
MvaI	CCWGG	5 cut(s)	605, 1167, 1310, 1434, 1623
MwoI	GCNNNNNNNGC	2 cut(s)	761, 1519
NaeI	GCCGGC	1 cut(s)	420
NcoI	CCATGG	1 cut(s)	1470
NdeI	CATATG	1 cut(s)	1629
NdeII	GATC	7 cut(s)	160, 679, 907, 1036, 1128, 1156, 1610
NgoMIV	GCCGGC	1 cut(s)	418
NlaIII	CATG	4 cut(s)	253, 686, 1064, 1474
NmuCI	GTSAC	2 cut(s)	260, 1329
NsiI	ATGCAT	2 cut(s)	112, 1377
NspV	TTCGAA	2 cut(s)	656, 1462
PceI	AGGCCT	1 cut(s)	1428
PciSI	GCTCTTC	1 cut(s)	1453
PdiI	GCCGGC	1 cut(s)	420
PdmI	GAANNNNTTC	2 cut(s)	1056, 1556
PfeI	GAWTC	6 cut(s)	319, 461, 548, 941, 1276, 1503
PfoI	TCCNGGA	1 cut(s)	1308
PkrI	GCNGC	2 cut(s)	484, 925
PleI	GAGTC	5 cut(s)	211, 564, 738, 793, 1121
PpsI	GAGTC	5 cut(s)	211, 564, 738, 793, 1121
PpuMI	RGGWCCY	1 cut(s)	851
PshBI	ATTAAT	2 cut(s)	267, 1215
Psp124BI	GAGCTC	3 cut(s)	636, 1448, 1548
Psp5II	RGGWCCY	1 cut(s)	851
Psp6I	CCWGG	5 cut(s)	603, 1165, 1308, 1432, 1621
PspFI	CCCAGC	2 cut(s)	214, 1518
PspGI	CCWGG	5 cut(s)	603, 1165, 1308, 1432, 1621
PspPI	GGNCC	5 cut(s)	226, 416, 851, 1340, 1467
PspPPI	RGGWCCY	1 cut(s)	851
PsuI	RGATCY	3 cut(s)	160, 1156, 1610
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	3 cut(s)	969, 1164, 1224
RsaNI	GTAC	3 cut(s)	968, 1163, 1223
SacI	GAGCTC	3 cut(s)	636, 1448, 1548
SapI	GCTCTTC	1 cut(s)	1453
SaqAI	TTAA	4 cut(s)	267, 708, 1215, 1292
SatI	GCNGC	2 cut(s)	483, 924
Sau3AI	GATC	7 cut(s)	160, 679, 907, 1036, 1128, 1156, 1610
Sau96I	GGNCC	5 cut(s)	226, 416, 851, 1340, 1467
SchI	GAGTC	5 cut(s)	212, 565, 739, 794, 1122
ScrFI	CCNGG	5 cut(s)	605, 1167, 1310, 1434, 1623
SduI	GDGCHC	6 cut(s)	636, 704, 869, 1072, 1448, 1548
SfaNI	GCATC	5 cut(s)	119, 417, 573, 640, 1188
SfuI	TTCGAA	2 cut(s)	656, 1462
SinI	GGWCC	3 cut(s)	226, 851, 1340
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
Sse9I	AATT	9 cut(s)	23, 29, 58, 136, 306, 379, 399, 511, 1216
SseBI	AGGCCT	1 cut(s)	1428
SsiI	CCGC	2 cut(s)	434, 815
SspMI	CTAG	1 cut(s)	486
SstI	GAGCTC	3 cut(s)	636, 1448, 1548
StuI	AGGCCT	1 cut(s)	1428
StyD4I	CCNGG	5 cut(s)	603, 1165, 1308, 1432, 1621
StyI	CCWWGG	1 cut(s)	1470
TaaI	ACNGT	2 cut(s)	1227, 1273
TaiI	ACGT	1 cut(s)	1034
TaqI	TCGA	6 cut(s)	383, 656, 1072, 1352, 1462, 1605
TasI	AATT	9 cut(s)	23, 29, 58, 136, 306, 379, 399, 511, 1216
TatI	WGTACW	1 cut(s)	1222
TfiI	GAWTC	6 cut(s)	319, 461, 548, 941, 1276, 1503
Tru1I	TTAA	4 cut(s)	267, 708, 1215, 1292
Tru9I	TTAA	4 cut(s)	267, 708, 1215, 1292
TscAI	CASTG	5 cut(s)	286, 811, 1138, 1200, 1278
TseFI	GTSAC	2 cut(s)	260, 1329
TseI	GCWGC	2 cut(s)	482, 923
Tsp45I	GTSAC	2 cut(s)	260, 1329
TspGWI	ACGGA	1 cut(s)	925
TspRI	CASTG	5 cut(s)	286, 811, 1138, 1200, 1278
Vha464I	CTTAAG	1 cut(s)	707
VpaK11BI	GGWCC	3 cut(s)	226, 851, 1340
VspI	ATTAAT	2 cut(s)	267, 1215
XapI	RAATTY	5 cut(s)	23, 136, 379, 399, 511
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1568, 1604
XmnI	GAANNNNTTC	2 cut(s)	1056, 1556
XspI	CTAG	1 cut(s)	486
ZraI	GACGTC	1 cut(s)	1032
Zsp2I	ATGCAT	2 cut(s)	112, 1377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.