Rorug04G0297900
BHLH Family

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
47281140 .. 47286113
4974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0297900.1

Sequence Viewer

Length: 2151 bp
ATGGAAGAGACATTTGTACCGTTTCGTGGAATCAGGAATGATCTTCGAGGGAGGTTGAGTTGTTACAAGCAAGACTGGACTGGTGGTTTCCGGGCAGGCTTCAGGATTTTGGCTCCCACCACATACATATTTTTCGCTTCAGCTATTCCAGTTATTTCATTTGGAGAACAATTAGAAAGAGAGACGGACGGGGTTCTAACAGCAGTTCAAACATTATCATCTACGGCTTTATGTGGAATAATACACTCAATACTTGGGGGTCAGCCTCTGTTGATTCTTGGGGTTGCAGAGCCAACTGTTATTATGTACACATTCATGTTTAATTTTGCTAAAAATAGGCCGGAGTTGGGATCAAAGCTCTTCTTAGCATGGACTGCATGGGTATGCATGTGGACGGCAATACTGTTGTTCCTGCTGGCTATATTAGGGGCTTGCTCCATTATAAACAGATTCACTCGTCTTGCGGGAGAGTTATTTGGCCTTCTTATTGCAATGCTCTTCATGCAGGAAGCTATCAAAGGACTTGTTGAGGAGTTTCGCATACCTGAAAGAGAGAACCCAAATTCAATTCAATTTCAACCTTCATGGAGATTTGCAAATGGGATGTTTGCTTTAGTTCTGTCATTTGGTCTTCTACTAACTTCTTTGAAAAGCAGAAAAGCAAGGTCTTGGCGATATGGGTCTGGGTCACTACGAGGTTTCATAGCAGATTATGGTGTGCCACTGATGGTTTTGATCTGGTCCGCCATTTCCTATATACCAGCTGGAAGTGGAAGTGTTCCAAAAGAAATTCCAAGGCGCCTCTTCAGTCCAAATCCATGGTCACCAGGAGCTTACGAGAATTGGACTGTCGTCAAGGACATGCTAAATGTGCCAGTGCTGTATATAATTGGAGCATTCATTCCAGCAACAATGATTGCGGTGCTGTACTATTTTGACCATAGTGTAGCTTCTCAACTGGCTCAGCAGAAAGAATTTAATTTGAGAAAGCCACCTTCTTTCCATTATGATCTACTTCTTTTGGGATTCATGGTCATAATATGTGGTCTGATAGGTATACCTCCAGCCAATGGTGTCATACCACAATCTCCAATGCACACTAGAAGTTTGGCCACACTGAAACATCAGTTACTTCGCAATCGACTTGTAACAGCAGCAAGGAAATGTATGAGAAACAATGCAAGCTTGGGTCAAGTATATGGAAGCATGCAAGAAGCATATCAACATATGCAAACCCCACTAATATATCAGGAACCTTCAGCTCAGGGGCTAAAGGAATTGAAGGATTCAACTATTCAAATGGCTTCAAGCATGGGAAACATAAATGCTCCAGTTGATGAGACAGTGTTTGATGTTGAGAAAGAGATAGATGATTTATTACCTGTTGAGGTGAAAGAACAGCGGCTCAGCAACTTGCTTCAAGCTATAATTGTAGGAGCATGTGTTGGAGCCATGCCTTTTCTTAAAAAGATCCCAACTTCAGTACTCTGGGGTTATTTTGCCTTCATGGCGGTTGAAAGCTTACCGGGCAACCAGTTTTGGGAGAGGATTCTTTTGCTCTTCACGGCTCCAAGTAGAAGATACAAAGTCCTTGAGGAATACCATGCCACTTTTGTGGAAACAGTACCATTCAAGATGATTGCAGCATTTACAGTTTTCCAAACTGTGTACTTGCTTGTTTGTTTTGGAATTACATGGATACCTATTGCTGGGGTTCTCTTCCCATTAATGATCATGCTCCTGGTTCCTGTTAGACAATACATATTGCCAAAGTTCTTCAAAGGGGCACACCTTCAAGATTTAGATGCCTCAGAGTATGAAGAGGCACCTGCTGTATCATTCAACCTTGCAACTGAACGGGAGATGAGTAGGGCGGCATCATTTGCAGACGACGGAGAAATTTTAGATGGGGTAATGACTAGAAGCCGGGGTGAGATCAGGCATGTGTGTAGTCCTAAAATTACAAGCTCAACTACAACACCATCCAAGGAATTCACATGTATACAGAGCCCACTGTTCTCAGATAAGATATACAGTCCTCATCTCAGTGAGCTGAGAGTCGGGCAAAGTCCTCGGAACAGTGGAAAAGGGGAGTTTAGCCAAAGAACTGGACAGACAAAACCATCTAGTTTAGGGAAGGGTAAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

716

Amino Acids

79.93

Weight (kDa)

8.96

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HCO3_cotransp PF00955 7 - 180 1.1e-35 HCO3- transporter integral membrane domain
HCO3_cotransp PF00955 201 - 374 2.2e-23 HCO3- transporter integral membrane domain
HCO3_cotransp PF00955 462 - 604 2e-30 HCO3- transporter integral membrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000050)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_1g07041 FvH4_2g06412 FvH4_2g08146 FvH4_2g10321 FvH4_2g13511 FvH4_2g20780 FvH4_2g20781 FvH4_2g22171 FvH4_2g25221 FvH4_3g03500 FvH4_3g07130 FvH4_3g10140 FvH4_3g10141 FvH4_3g24350 FvH4_4g08242 FvH4_4g13410 FvH4_4g18140 FvH4_4g22470 FvH4_5g19920 FvH4_5g21501 FvH4_5g26612 FvH4_5g29621 FvH4_5g31990 FvH4_6g00280 FvH4_6g00280 FvH4_6g07190 FvH4_6g07190 FvH4_6g07190 FvH4_6g07190 FvH4_6g07190 FvH4_6g08820 FvH4_6g29600 FvH4_6g30401 FvH4_6g33630 FvH4_7g08310 FvH4_7g08311 FvH4_7g10871 FvH4_7g18890 FvH4_7g18891
malus_domestica MD01G1202900.v1.1 MD02G1249900.v1.1 MD03G1022200.v1.1 MD03G1164900.v1.1 MD04G1002000.v1.1 MD05G1167800.v1.1 MD05G1167900.v1.1 MD05G1202200.v1.1 MD05G1215800.v1.1 MD05G1328800.v1.1 MD07G1020000.v1.1 MD07G1020100.v1.1 MD07G1084700.v1.1 MD08G1007900.v1.1 MD08G1229500.v1.1 MD09G1016000.v1.1 MD09G1184200.v1.1 MD10G1198800.v1.1 MD10G1198900.v1.1 MD11G1203900.v1.1 MD12G1081100.v1.1 MD12G1101700.v1.1 MD13G1126700.v1.1 MD13G1158300.v1.1 MD13G1161500.v1.1 MD14G1083800.v1.1 MD14G1125700.v1.1 MD14G1159700.v1.1 MD14G1159800.v1.1 MD17G1252600.v1.1 MD17G1261900.v1.1 MD17G1262000.v1.1
pyrus_communis pycom01g12270 pycom02g14690 pycom02g17560 pycom02g26880 pycom02g26890 pycom03g13090 pycom03g19990 pycom03g20000 pycom04g00130 pycom04g05050 pycom04g10460 pycom05g27190 pycom07g05970 pycom08g02820 pycom08g11570 pycom09g07420 pycom09g07430 pycom09g08580 pycom10g06760 pycom10g11210 pycom10g11220 pycom11g14380 pycom11g21990 pycom12419g00230 pycom12494g00020 pycom14g06150 pycom15g09750 pycom15g20130 pycom15g27020 pycom15g27230 pycom16g17550 pycom16g18200 pycom5153684g00260 pycom520g00040
rosa_chinensis RchiOBHm_Chr1g0320331 RchiOBHm_Chr1g0329871 RchiOBHm_Chr1g0339991 RchiOBHm_Chr1g0371171 RchiOBHm_Chr1g0378741 RchiOBHm_Chr1g0378751 RchiOBHm_Chr1g0379271 RchiOBHm_Chr2g0122381 RchiOBHm_Chr2g0133251 RchiOBHm_Chr2g0133271 RchiOBHm_Chr2g0133331 RchiOBHm_Chr2g0135141 RchiOBHm_Chr2g0141711 RchiOBHm_Chr2g0145531 RchiOBHm_Chr2g0149141 RchiOBHm_Chr2g0149151 RchiOBHm_Chr2g0150581 RchiOBHm_Chr2g0159361 RchiOBHm_Chr2g0162161 RchiOBHm_Chr2g0174211 RchiOBHm_Chr3g0484061 RchiOBHm_Chr3g0491361 RchiOBHm_Chr4g0413141 RchiOBHm_Chr4g0444601 RchiOBHm_Chr5g0004901 RchiOBHm_Chr5g0004911 RchiOBHm_Chr5g0010461 RchiOBHm_Chr5g0027941 RchiOBHm_Chr5g0028311 RchiOBHm_Chr5g0030141 RchiOBHm_Chr5g0035621 RchiOBHm_Chr5g0050871 RchiOBHm_Chr5g0053321 RchiOBHm_Chr5g0060091 RchiOBHm_Chr5g0063301 RchiOBHm_Chr5g0066571 RchiOBHm_Chr5g0067561 RchiOBHm_Chr6g0262741 RchiOBHm_Chr7g0184001 RchiOBHm_Chr7g0206181 RchiOBHm_Chr7g0212031 RchiOBHm_Chr7g0214521 RchiOBHm_Chr7g0230521 RchiOBHm_Chr7g0230621
rosa_laevigata RLG00000014424 RLG00000022069 RLG00000036206
rosa_multiflora Rmu_sc0000121.1_g000006 Rmu_sc0000271.1_g000001 Rmu_sc0000293.1_g000010 Rmu_sc0000309.1_g000052 Rmu_sc0000556.1_g000045 Rmu_sc0000837.1_g000079 Rmu_sc0001069.1_g000026 Rmu_sc0001198.1_g000001 Rmu_sc0001353.1_g000031 Rmu_sc0001461.1_g000107 Rmu_sc0002011.1_g000038 Rmu_sc0003270.1_g000034 Rmu_sc0003874.1_g000017 Rmu_sc0004729.1_g000006 Rmu_sc0007116.1_g000001 Rmu_sc0009087.1_g000019 Rmu_sc0009877.1_g000004 Rmu_sc0015060.1_g000008 Rmu_sc0016097.1_g000001
rosa_roxburghii Rroxscaffold_1G00024140 Rroxscaffold_1G00027240 Rroxscaffold_1G00030710 Rroxscaffold_1G00035010 Rroxscaffold_1G00050490 Rroxscaffold_1G00069340 Rroxscaffold_1G00072870 Rroxscaffold_2G00078360 Rroxscaffold_2G00098490 Rroxscaffold_2G00106110 Rroxscaffold_2G00109450 Rroxscaffold_2G00125260 Rroxscaffold_2G00154260 Rroxscaffold_3G00221290 Rroxscaffold_3G00221300 Rroxscaffold_3G00232770 Rroxscaffold_3G00249670 Rroxscaffold_3G00255640 Rroxscaffold_3G00255820 Rroxscaffold_3G00255870 Rroxscaffold_3G00258160 Rroxscaffold_3G00258170 Rroxscaffold_3G00265290 Rroxscaffold_4G00320550 Rroxscaffold_4G00322930 Rroxscaffold_4G00331930 Rroxscaffold_4G00332460 Rroxscaffold_5G00337730 Rroxscaffold_5G00364590 Rroxscaffold_5G00365660 Rroxscaffold_5G00373900 Rroxscaffold_6G00395750 Rroxscaffold_6G00397090 Rroxscaffold_6G00407660 Rroxscaffold_6G00421590 Rroxscaffold_7G00156820 Rroxscaffold_7G00174040 Rroxscaffold_7G00175610 Rroxscaffold_7G00182780 Rroxscaffold_7G00210390 Rroxscaffold_7G00210490 Rroxscaffold_7G00214770 Rroxscaffold_7G00215580 Rroxscaffold_7G00215690
rosa_rugosa Rorug01G0099600 Rorug01G0127300 Rorug02G0145300 Rorug02G0145400 Rorug02G0145500.1 Rorug02G0145600 Rorug02G0145700 Rorug02G0145700 Rorug02G0278400 Rorug02G0444700 Rorug02G0542800 Rorug02G0547200 Rorug04G0015900 Rorug04G0082400 Rorug04G0297900 Rorug05G0078200 Rorug05G0207900 Rorug05G0277000 Rorug05G0528600 Rorug05G0528700 Rorug05G0528800 Rorug06G0001000 Rorug06G0246500 Rorug06G0246600 Rorug06G0246700 Rorug07G0189200 Rorug07G0189300 Rorug07G0189400 Rorug07G0189500 Rorug07G0212200 Rorug07G0212200 Rorug07G0221500 Rorug07G0248800
rosa_samantha Rh1AG011600 Rh1AG052100 Rh1AG163900 Rh1BG006600 Rh1BG025100 Rh1BG025200 Rh1BG032500 Rh1BG374400 Rh1BG374500 Rh1CG153000 Rh1DG148800 Rh1DG160400 Rh1DG181900 Rh1DG405100 Rh1DG445600 Rh2AG005600 Rh2AG137100 Rh2AG150500 Rh2AG150600 Rh2AG243200 Rh2AG264300 Rh2AG349900 Rh2AG387700 Rh2AG485100 Rh2CG115600 Rh2CG269600 Rh2CG294000 Rh2CG294100 Rh2CG317700 Rh2CG375000 Rh2CG471200 Rh2CG611400 Rh2DG070000 Rh2DG073900 Rh2DG234600 Rh3AG258200 Rh3CG251500 Rh3CG283900 Rh3CG331200 Rh3CG371500 Rh3DG077300 Rh3DG185900 Rh3DG332700 Rh3DG360400 Rh4AG105100 Rh4BG191100 Rh4DG139800 Rh4DG186000 Rh4DG187900 Rh5AG302000 Rh5AG431600 Rh5CG090000 Rh5CG214700 Rh5CG299100 Rh5CG561200 Rh5DG205600 Rh5DG244500 Rh5DG257300 Rh5DG257400 Rh5DG325900 Rh5DG335500 Rh5DG359300 Rh5DG364600 Rh5DG388600 Rh6AG013900 Rh6BG045400 Rh6CG031300 Rh6CG069100 Rh6CG157500 Rh6DG029800 Rh6DG066100 Rh6DG260800 Rh6DG320100 Rh7AG007600 Rh7BG046100 Rh7BG053900 Rh7BG204900 Rh7BG322600 Rh7BG421200 Rh7DG063200 Rh7DG233200 Rh7DG287000 Rh7DG289600 Rh7DG323500 Rh7DG323800 Rh7DG323900
rosa_wichuraiana Rw0G001160 Rw0G003580 Rw0G003590 Rw0G005910 Rw0G006230 Rw0G010240 Rw0G011660 Rw0G015630 Rw0G021440 Rw0G023690 Rw1G000060 Rw1G006170 Rw1G007940 Rw1G008630 Rw1G009460 Rw1G013800 Rw1G015100 Rw1G015710 Rw1G016040 Rw1G024780 Rw2G004590 Rw2G026770 Rw2G030550 Rw2G036430 Rw3G011440 Rw3G020600 Rw3G020710 Rw3G025390 Rw3G026320 Rw4G003380 Rw4G016140 Rw4G018350 Rw4G027460 Rw5G004690 Rw5G011140 Rw5G011820 Rw5G016560 Rw5G023230 Rw5G027290 Rw5G028520 Rw5G040540 Rw5G046050 Rw6G013650 Rw6G018020 Rw6G019800 Rw6G023450 Rw7G027610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 443
AarI CACCTGC 1 cut(s) 1837
Acc36I ACCTGC 1 cut(s) 1837
AccB1I GGYRCC 2 cut(s) 798, 1825
AccB7I CCANNNNNTGG 1 cut(s) 1070
AccI GTMKAC 2 cut(s) 1057, 2002
AciI CCGC 6 cut(s) 464, 744, 920, 1402, 1511, 1874
AclWI GGATC 2 cut(s) 358, 1465
AcoI YGGCCR 1 cut(s) 1110
AcsI RAATTY 5 cut(s) 562, 789, 974, 1899, 1991
AcuI CTGAAG 5 cut(s) 85, 123, 790, 1242, 1464
AcyI GRCGYC 1 cut(s) 799
AfaI GTAC 6 cut(s) 18, 308, 929, 1485, 1626, 1670
AfiI CCNNNNNNNGG 5 cut(s) 26, 347, 1070, 1540, 1709
AflIII ACRYGT 1 cut(s) 1997
AjnI CCWGG 2 cut(s) 826, 1740
AleI CACNNNNGTG 1 cut(s) 1613
Alw26I GTCTC 3 cut(s) 2, 176, 1334
AlwI GGATC 2 cut(s) 358, 1465
AlwNI CAGNNNCTG 1 cut(s) 268
AoxI GGCC 3 cut(s) 338, 478, 1110
ApeKI GCWGC 2 cut(s) 1154, 1643
ApoI RAATTY 5 cut(s) 562, 789, 974, 1899, 1991
ArsI GACNNNNNNTTYG 2 cut(s) 806, 838
AseI ATTAAT 1 cut(s) 1727
AspLEI GCGC 1 cut(s) 801
AspS9I GGNCC 1 cut(s) 741
AsuC2I CCSGG 3 cut(s) 92, 1527, 1928
AsuHPI GGTGA 3 cut(s) 816, 1402, 1943
AvaII GGWCC 1 cut(s) 741
BaeGI GKGCMC 1 cut(s) 1789
BaeI ACNNNNGTAYC 1 cut(s) 33
BalI TGGCCA 1 cut(s) 1112
BanI GGYRCC 2 cut(s) 798, 1825
BanII GRGCYC 1 cut(s) 2012
BbsI GAAGAC 1 cut(s) 623
BbvI GCAGC 2 cut(s) 1166, 1655
BccI CCATC 4 cut(s) 721, 1901, 1990, 2131
BceAI ACGGC 3 cut(s) 240, 411, 1581
BcgI CGANNNNNNTGC 2 cut(s) 2054, 2088
BciT130I CCWGG 2 cut(s) 828, 1742
BciVI GTATCC 1 cut(s) 1692
BclI TGATCA 1 cut(s) 1731
BcnI CCSGG 3 cut(s) 92, 1527, 1928
BcoDI GTCTC 3 cut(s) 2, 176, 1334
BfaI CTAG 3 cut(s) 1101, 1920, 2127
BfoI RGCGCY 1 cut(s) 802
BfuAI ACCTGC 1 cut(s) 1837
BfuI GTATCC 1 cut(s) 1692
BglI GCCNNNNNGGC 1 cut(s) 1508
BisI GCNGC 4 cut(s) 1155, 1403, 1644, 1875
BlpI GCTNAGC 2 cut(s) 963, 1406
BlsI GCNGC 4 cut(s) 1156, 1404, 1645, 1876
BmcAI AGTACT 1 cut(s) 1485
Bme1390I CCNGG 5 cut(s) 92, 828, 1527, 1742, 1928
Bme18I GGWCC 1 cut(s) 741
BmgT120I GGNCC 1 cut(s) 741
BmiI GGNNCC 7 cut(s) 114, 800, 1254, 1450, 1569, 1746, 1827
BmrFI CCNGG 5 cut(s) 92, 828, 1527, 1742, 1928
BmsI GCATC 2 cut(s) 1795, 1886
BoxI GACNNNNGTC 1 cut(s) 851
BpiI GAAGAC 1 cut(s) 623
BpmI CTGGAG 2 cut(s) 1047, 1314
Bpu10I CCTNAGC 1 cut(s) 1263
Bpu1102I GCTNAGC 2 cut(s) 963, 1406
BpuEI CTTGAG 1 cut(s) 1613
BpuMI CCSGG 3 cut(s) 92, 1527, 1928
BsaHI GRCGYC 1 cut(s) 799
BsaJI CCNNGG 5 cut(s) 794, 818, 1927, 1986, 2072
BsaXI ACNNNNNCTCC 4 cut(s) 43, 73, 1428, 1458
Bsc4I CCNNNNNNNGG 5 cut(s) 26, 347, 1070, 1540, 1709
Bse1I ACTGG 8 cut(s) 80, 85, 149, 875, 963, 1331, 1534, 2113
Bse3DI GCAATG 1 cut(s) 498
BseBI CCWGG 2 cut(s) 828, 1742
BseDI CCNNGG 5 cut(s) 794, 818, 1927, 1986, 2072
BseGI GGATG 2 cut(s) 609, 1982
BseLI CCNNNNNNNGG 5 cut(s) 26, 347, 1070, 1540, 1709
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 7 cut(s) 977, 1277, 1420, 1824, 2034, 2045, 2059
BseNI ACTGG 8 cut(s) 80, 85, 149, 875, 963, 1331, 1534, 2113
BseRI GAGGAG 1 cut(s) 545
BseSI GKGCMC 1 cut(s) 1789
BseXI GCAGC 2 cut(s) 1166, 1655
BseYI CCCAGC 1 cut(s) 1709
BshFI GGCC 3 cut(s) 340, 480, 1112
BshNI GGYRCC 2 cut(s) 798, 1825
BsiSI CCGG 4 cut(s) 91, 341, 1526, 1927
BslI CCNNNNNNNGG 5 cut(s) 26, 347, 1070, 1540, 1709
BsmAI GTCTC 3 cut(s) 2, 176, 1334
BsmBI CGTCTC 1 cut(s) 176
BsmI GAATGC 1 cut(s) 896
BsnI GGCC 3 cut(s) 340, 480, 1112
Bsp1286I GDGCHC 2 cut(s) 1789, 2012
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 7 cut(s) 40, 350, 735, 1009, 1470, 1731, 1935
Bsp1720I GCTNAGC 2 cut(s) 963, 1406
Bsp19I CCATGG 1 cut(s) 818
BspACI CCGC 6 cut(s) 464, 744, 920, 1402, 1511, 1874
BspANI GGCC 3 cut(s) 340, 480, 1112
BspCNI CTCAG 7 cut(s) 976, 1276, 1419, 1823, 2033, 2046, 2058
BspLI GGNNCC 7 cut(s) 114, 800, 1254, 1450, 1569, 1746, 1827
BspMI ACCTGC 1 cut(s) 1837
BspPI GGATC 2 cut(s) 358, 1465
BspQI GCTCTTC 3 cut(s) 365, 503, 1565
BspT107I GGYRCC 2 cut(s) 798, 1825
BsrDI GCAATG 1 cut(s) 498
BsrGI TGTACA 1 cut(s) 306
BsrI ACTGG 8 cut(s) 80, 85, 149, 875, 963, 1331, 1534, 2113
BssECI CCNNGG 5 cut(s) 794, 818, 1927, 1986, 2072
BssMI GATC 7 cut(s) 40, 350, 735, 1009, 1470, 1731, 1935
BssNAI GTATAC 2 cut(s) 1058, 2003
BssNI GRCGYC 1 cut(s) 799
BssT1I CCWWGG 3 cut(s) 794, 818, 1986
Bst1107I GTATAC 2 cut(s) 1058, 2003
Bst2UI CCWGG 2 cut(s) 828, 1742
Bst6I CTCTTC 6 cut(s) 365, 503, 809, 1565, 1724, 1815
BstACI GRCGYC 1 cut(s) 799
BstAPI GCANNNNNTGC 2 cut(s) 374, 1883
BstAUI TGTACA 1 cut(s) 306
BstC8I GCNNGC 5 cut(s) 97, 417, 433, 1183, 1208
BstDEI CTNAG 9 cut(s) 364, 963, 1263, 1406, 1810, 2020, 2045, 2054, 2148
BstDSI CCRYGG 1 cut(s) 818
BstEII GGTNACC 1 cut(s) 822
BstF5I GGATG 2 cut(s) 609, 1982
BstH2I RGCGCY 1 cut(s) 802
BstHHI GCGC 1 cut(s) 801
BstKTI GATC 7 cut(s) 43, 353, 738, 1012, 1473, 1734, 1938
BstMAI GTCTC 3 cut(s) 2, 176, 1334
BstMBI GATC 7 cut(s) 40, 350, 735, 1009, 1470, 1731, 1935
BstMWI GCNNNNNNNGC 6 cut(s) 374, 502, 871, 1508, 1527, 1883
BstNI CCWGG 2 cut(s) 828, 1742
BstNSI RCATGY 6 cut(s) 391, 865, 1210, 1443, 1946, 2001
BstPAI GACNNNNGTC 1 cut(s) 851
BstPI GGTNACC 1 cut(s) 822
BstSCI CCNGG 5 cut(s) 90, 826, 1525, 1740, 1926
BstSLI GKGCMC 1 cut(s) 1789
BstV1I GCAGC 2 cut(s) 1166, 1655
BstV2I GAAGAC 1 cut(s) 623
BstX2I RGATCY 1 cut(s) 1470
BstXI CCANNNNNNTGG 3 cut(s) 819, 1615, 2108
BstYI RGATCY 1 cut(s) 1470
BstZ17I GTATAC 2 cut(s) 1058, 2003
BsuI GTATCC 1 cut(s) 1692
BsuRI GGCC 3 cut(s) 340, 480, 1112
BtgI CCRYGG 1 cut(s) 818
BtsCI GGATG 2 cut(s) 609, 1982
BtsIMutI CAGTG 7 cut(s) 722, 882, 1115, 1350, 2012, 2053, 2086
BveI ACCTGC 1 cut(s) 1837
Cac8I GCNNGC 5 cut(s) 97, 417, 433, 1183, 1208
CaiI CAGNNNCTG 1 cut(s) 268
CfoI GCGC 1 cut(s) 801
Cfr13I GGNCC 1 cut(s) 741
Csp6I GTAC 6 cut(s) 17, 307, 928, 1484, 1625, 1669
CviQI GTAC 6 cut(s) 17, 307, 928, 1484, 1625, 1669
DdeI CTNAG 9 cut(s) 364, 963, 1263, 1406, 1810, 2020, 2045, 2054, 2148
DinI GGCGCC 1 cut(s) 800
DpnI GATC 7 cut(s) 42, 352, 737, 1011, 1472, 1733, 1937
DpnII GATC 7 cut(s) 40, 350, 735, 1009, 1470, 1731, 1935
EaeI YGGCCR 1 cut(s) 1110
Eam1104I CTCTTC 6 cut(s) 365, 503, 809, 1565, 1724, 1815
EarI CTCTTC 6 cut(s) 365, 503, 809, 1565, 1724, 1815
EciI GGCGGA 1 cut(s) 733
Eco130I CCWWGG 3 cut(s) 794, 818, 1986
Eco24I GRGCYC 1 cut(s) 2012
Eco47I GGWCC 1 cut(s) 741
Eco57I CTGAAG 5 cut(s) 85, 123, 790, 1242, 1464
Eco91I GGTNACC 1 cut(s) 822
EcoO65I GGTNACC 1 cut(s) 822
EcoRI GAATTC 1 cut(s) 1991
EcoRII CCWGG 2 cut(s) 826, 1740
EcoT14I CCWWGG 3 cut(s) 794, 818, 1986
EcoT22I ATGCAT 1 cut(s) 389
EcoT38I GRGCYC 1 cut(s) 2012
EgeI GGCGCC 1 cut(s) 800
EheI GGCGCC 1 cut(s) 800
ErhI CCWWGG 3 cut(s) 794, 818, 1986
Esp3I CGTCTC 1 cut(s) 176
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FauI CCCGC 1 cut(s) 457
FauNDI CATATG 1 cut(s) 1227
FbaI TGATCA 1 cut(s) 1731
FblI GTMKAC 2 cut(s) 1057, 2002
Fnu4HI GCNGC 4 cut(s) 1155, 1403, 1644, 1875
FokI GGATG 2 cut(s) 616, 1969
FriOI GRGCYC 1 cut(s) 2012
Fsp4HI GCNGC 4 cut(s) 1155, 1403, 1644, 1875
FspBI CTAG 3 cut(s) 1101, 1920, 2127
GlaI GCGC 1 cut(s) 800
GluI GCNGC 4 cut(s) 1155, 1403, 1644, 1875
GsaI CCCAGC 1 cut(s) 1713
GsuI CTGGAG 2 cut(s) 1047, 1314
HaeII RGCGCY 1 cut(s) 802
HaeIII GGCC 3 cut(s) 340, 480, 1112
HapII CCGG 4 cut(s) 91, 341, 1526, 1927
HhaI GCGC 1 cut(s) 801
Hin1I GRCGYC 1 cut(s) 799
Hin6I GCGC 1 cut(s) 799
HinP1I GCGC 1 cut(s) 799
HindIII AAGCTT 2 cut(s) 1183, 1519
HinfI GANTC 7 cut(s) 30, 274, 450, 1026, 1286, 1549, 2058
HpaII CCGG 4 cut(s) 91, 341, 1526, 1927
HphI GGTGA 3 cut(s) 816, 1402, 1943
Hpy166II GTNNAC 6 cut(s) 309, 393, 1058, 1669, 2003, 2144
Hpy188I TCNGA 4 cut(s) 1050, 1813, 2023, 2076
Hpy188III TCNNGA 5 cut(s) 34, 103, 1250, 1633, 1796
Hpy8I GTNNAC 6 cut(s) 309, 393, 1058, 1669, 2003, 2144
Hpy99I CGWCG 1 cut(s) 1895
HpyAV CCTTC 8 cut(s) 491, 591, 1005, 1266, 1276, 1513, 1802, 2131
HpyF10VI GCNNNNNNNGC 6 cut(s) 374, 502, 871, 1508, 1527, 1883
HpyF3I CTNAG 9 cut(s) 364, 963, 1263, 1406, 1810, 2020, 2045, 2054, 2148
Hsp92I GRCGYC 1 cut(s) 799
HspAI GCGC 1 cut(s) 799
KasI GGCGCC 1 cut(s) 798
Ksp22I TGATCA 1 cut(s) 1731
Kzo9I GATC 7 cut(s) 40, 350, 735, 1009, 1470, 1731, 1935
LguI GCTCTTC 3 cut(s) 365, 503, 1565
LmnI GCTCC 9 cut(s) 118, 440, 830, 893, 1333, 1436, 1448, 1573, 1743
Lsp1109I GCAGC 2 cut(s) 1166, 1655
LweI GCATC 2 cut(s) 1795, 1886
MaeI CTAG 3 cut(s) 1101, 1920, 2127
MaeIII GTNAC 5 cut(s) 62, 687, 822, 1128, 1147
MalI GATC 7 cut(s) 42, 352, 737, 1011, 1472, 1733, 1937
MboI GATC 7 cut(s) 40, 350, 735, 1009, 1470, 1731, 1935
MflI RGATCY 1 cut(s) 1470
MhlI GDGCHC 2 cut(s) 1789, 2012
MlsI TGGCCA 1 cut(s) 1112
MluNI TGGCCA 1 cut(s) 1112
Mly113I GGCGCC 1 cut(s) 799
MlyI GAGTC 1 cut(s) 2067
MmeI TCCRAC 1 cut(s) 1426
Mox20I TGGCCA 1 cut(s) 1112
Mph1103I ATGCAT 1 cut(s) 389
MscI TGGCCA 1 cut(s) 1112
MseI TTAA 4 cut(s) 321, 978, 1464, 1727
MslI CAYNNNNRTG 4 cut(s) 314, 382, 1613, 2046
Msp20I TGGCCA 1 cut(s) 1112
MspA1I CMGCKG 2 cut(s) 764, 1402
MspI CCGG 4 cut(s) 91, 341, 1526, 1927
MspR9I CCNGG 5 cut(s) 92, 828, 1527, 1742, 1928
Mva1269I GAATGC 1 cut(s) 896
MvaI CCWGG 2 cut(s) 828, 1742
MwoI GCNNNNNNNGC 6 cut(s) 374, 502, 871, 1508, 1527, 1883
NarI GGCGCC 1 cut(s) 799
NciI CCSGG 3 cut(s) 92, 1527, 1928
NcoI CCATGG 1 cut(s) 818
NdeI CATATG 1 cut(s) 1227
NdeII GATC 7 cut(s) 40, 350, 735, 1009, 1470, 1731, 1935
NlaIV GGNNCC 7 cut(s) 114, 800, 1254, 1450, 1569, 1746, 1827
NmuCI GTSAC 2 cut(s) 687, 822
NsiI ATGCAT 1 cut(s) 389
NspI RCATGY 6 cut(s) 391, 865, 1210, 1443, 1946, 2001
OliI CACNNNNGTG 1 cut(s) 1613
PaeI GCATGC 1 cut(s) 1210
PaqCI CACCTGC 1 cut(s) 1837
PciI ACATGT 1 cut(s) 1997
PciSI GCTCTTC 3 cut(s) 365, 503, 1565
PctI GAATGC 1 cut(s) 896
PfeI GAWTC 6 cut(s) 30, 274, 450, 1026, 1286, 1549
PflMI CCANNNNNTGG 1 cut(s) 1070
PkrI GCNGC 4 cut(s) 1156, 1404, 1645, 1876
PleI GAGTC 1 cut(s) 2066
PluTI GGCGCC 1 cut(s) 802
PpsI GAGTC 1 cut(s) 2066
PscI ACATGT 1 cut(s) 1997
PshAI GACNNNNGTC 1 cut(s) 851
PshBI ATTAAT 1 cut(s) 1727
PsiI TTATAA 1 cut(s) 443
Psp6I CCWGG 2 cut(s) 826, 1740
PspEI GGTNACC 1 cut(s) 822
PspFI CCCAGC 1 cut(s) 1709
PspGI CCWGG 2 cut(s) 826, 1740
PspN4I GGNNCC 7 cut(s) 114, 800, 1254, 1450, 1569, 1746, 1827
PspPI GGNCC 1 cut(s) 741
PstNI CAGNNNCTG 1 cut(s) 268
PsuI RGATCY 1 cut(s) 1470
PvuII CAGCTG 1 cut(s) 764
RsaI GTAC 6 cut(s) 18, 308, 929, 1485, 1626, 1670
RsaNI GTAC 6 cut(s) 17, 307, 928, 1484, 1625, 1669
RseI CAYNNNNRTG 4 cut(s) 314, 382, 1613, 2046
SapI GCTCTTC 3 cut(s) 365, 503, 1565
SaqAI TTAA 4 cut(s) 321, 978, 1464, 1727
SatI GCNGC 4 cut(s) 1155, 1403, 1644, 1875
Sau3AI GATC 7 cut(s) 40, 350, 735, 1009, 1470, 1731, 1935
Sau96I GGNCC 1 cut(s) 741
ScaI AGTACT 1 cut(s) 1485
SchI GAGTC 1 cut(s) 2067
ScrFI CCNGG 5 cut(s) 92, 828, 1527, 1742, 1928
SduI GDGCHC 2 cut(s) 1789, 2012
SfaNI GCATC 2 cut(s) 1795, 1886
SfoI GGCGCC 1 cut(s) 800
SinI GGWCC 1 cut(s) 741
SmiMI CAYNNNNRTG 4 cut(s) 314, 382, 1613, 2046
SmlI CTYRAG 1 cut(s) 1592
SmoI CTYRAG 1 cut(s) 1592
SphI GCATGC 1 cut(s) 1210
SsiI CCGC 6 cut(s) 464, 744, 920, 1402, 1511, 1874
SspDI GGCGCC 1 cut(s) 798
SspMI CTAG 3 cut(s) 1101, 1920, 2127
StyD4I CCNGG 5 cut(s) 90, 826, 1525, 1740, 1926
StyI CCWWGG 3 cut(s) 794, 818, 1986
TaqI TCGA 2 cut(s) 46, 1141
TatI WGTACW 4 cut(s) 306, 927, 1483, 1668
TauI GCSGC 2 cut(s) 1405, 1877
TfiI GAWTC 6 cut(s) 30, 274, 450, 1026, 1286, 1549
Tru1I TTAA 4 cut(s) 321, 978, 1464, 1727
Tru9I TTAA 4 cut(s) 321, 978, 1464, 1727
TscAI CASTG 7 cut(s) 729, 882, 1122, 1350, 2019, 2053, 2086
TseFI GTSAC 2 cut(s) 687, 822
TseI GCWGC 2 cut(s) 1154, 1643
Tsp45I GTSAC 2 cut(s) 687, 822
TspDTI ATGAA 9 cut(s) 147, 304, 490, 573, 691, 889, 1018, 1495, 1833
TspGWI ACGGA 2 cut(s) 200, 1908
TspRI CASTG 7 cut(s) 729, 882, 1122, 1350, 2019, 2053, 2086
Van91I CCANNNNNTGG 1 cut(s) 1070
VpaK11BI GGWCC 1 cut(s) 741
VspI ATTAAT 1 cut(s) 1727
XapI RAATTY 5 cut(s) 562, 789, 974, 1899, 1991
XceI RCATGY 6 cut(s) 391, 865, 1210, 1443, 1946, 2001
XmiI GTMKAC 2 cut(s) 1057, 2002
XspI CTAG 3 cut(s) 1101, 1920, 2127
ZrmI AGTACT 1 cut(s) 1485
Zsp2I ATGCAT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.