DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| REPA_OB_2 | PF16900 | 3 - 67 | 6.2e-06 | Replication protein A OB domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 218 |
| AclWI | GGATC | 3 cut(s) | 383, 396, 427 |
| AcoI | YGGCCR | 2 cut(s) | 222, 326 |
| AcsI | RAATTY | 2 cut(s) | 103, 227 |
| AfaI | GTAC | 1 cut(s) | 315 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 238 |
| AflII | CTTAAG | 1 cut(s) | 497 |
| AgsI | TTSAA | 3 cut(s) | 322, 374, 480 |
| AluBI | AGCT | 2 cut(s) | 149, 554 |
| AluI | AGCT | 2 cut(s) | 149, 554 |
| Alw21I | GWGCWC | 1 cut(s) | 198 |
| AlwI | GGATC | 3 cut(s) | 383, 396, 427 |
| AoxI | GGCC | 3 cut(s) | 222, 259, 326 |
| ApoI | RAATTY | 2 cut(s) | 103, 227 |
| AseI | ATTAAT | 1 cut(s) | 524 |
| AsuHPI | GGTGA | 2 cut(s) | 152, 530 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 37 |
| BalI | TGGCCA | 1 cut(s) | 224 |
| BamHI | GGATCC | 1 cut(s) | 388 |
| Bbv12I | GWGCWC | 1 cut(s) | 198 |
| BceAI | ACGGC | 1 cut(s) | 341 |
| BfaI | CTAG | 1 cut(s) | 150 |
| BfrI | CTTAAG | 1 cut(s) | 497 |
| BmiI | GGNNCC | 1 cut(s) | 390 |
| BmsI | GCATC | 1 cut(s) | 279 |
| BpmI | CTGGAG | 1 cut(s) | 422 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 238 |
| Bse1I | ACTGG | 5 cut(s) | 70, 191, 439, 446, 520 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 238 |
| BseNI | ACTGG | 5 cut(s) | 70, 191, 439, 446, 520 |
| BseRI | GAGGAG | 1 cut(s) | 124 |
| BshFI | GGCC | 3 cut(s) | 224, 261, 328 |
| BsiHKAI | GWGCWC | 1 cut(s) | 198 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 238 |
| BsnI | GGCC | 3 cut(s) | 224, 261, 328 |
| Bsp1286I | GDGCHC | 1 cut(s) | 198 |
| Bsp143I | GATC | 3 cut(s) | 276, 388, 432 |
| BspANI | GGCC | 3 cut(s) | 224, 261, 328 |
| BspLI | GGNNCC | 1 cut(s) | 390 |
| BspPI | GGATC | 3 cut(s) | 383, 396, 427 |
| BspTI | CTTAAG | 1 cut(s) | 497 |
| BsrI | ACTGG | 5 cut(s) | 70, 191, 439, 446, 520 |
| BssMI | GATC | 3 cut(s) | 276, 388, 432 |
| Bst4CI | ACNGT | 4 cut(s) | 17, 55, 180, 415 |
| Bst6I | CTCTTC | 1 cut(s) | 333 |
| BstAFI | CTTAAG | 1 cut(s) | 497 |
| BstC8I | GCNNGC | 1 cut(s) | 198 |
| BstKTI | GATC | 3 cut(s) | 279, 391, 435 |
| BstMBI | GATC | 3 cut(s) | 276, 388, 432 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 267 |
| BstNSI | RCATGY | 1 cut(s) | 270 |
| BstX2I | RGATCY | 1 cut(s) | 388 |
| BstYI | RGATCY | 1 cut(s) | 388 |
| BsuRI | GGCC | 3 cut(s) | 224, 261, 328 |
| BtsI | GCAGTG | 1 cut(s) | 423 |
| BtsIMutI | CAGTG | 5 cut(s) | 63, 198, 420, 423, 513 |
| Cac8I | GCNNGC | 1 cut(s) | 198 |
| Csp6I | GTAC | 1 cut(s) | 314 |
| CviAII | CATG | 4 cut(s) | 267, 403, 539, 561 |
| CviJI | RGCY | 6 cut(s) | 149, 224, 261, 328, 474, 554 |
| CviKI_1 | RGCY | 6 cut(s) | 149, 224, 261, 328, 474, 554 |
| CviQI | GTAC | 1 cut(s) | 314 |
| DpnI | GATC | 3 cut(s) | 278, 390, 434 |
| DpnII | GATC | 3 cut(s) | 276, 388, 432 |
| DraI | TTTAAA | 1 cut(s) | 490 |
| EaeI | YGGCCR | 2 cut(s) | 222, 326 |
| Eam1104I | CTCTTC | 1 cut(s) | 333 |
| EarI | CTCTTC | 1 cut(s) | 333 |
| Eco32I | GATATC | 1 cut(s) | 121 |
| EcoRV | GATATC | 1 cut(s) | 121 |
| EcoT22I | ATGCAT | 1 cut(s) | 272 |
| FaeI | CATG | 4 cut(s) | 270, 406, 542, 564 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 353, 385 |
| FatI | CATG | 4 cut(s) | 266, 402, 538, 560 |
| FspBI | CTAG | 1 cut(s) | 150 |
| GsuI | CTGGAG | 1 cut(s) | 422 |
| HaeIII | GGCC | 3 cut(s) | 224, 261, 328 |
| Hin1II | CATG | 4 cut(s) | 270, 406, 542, 564 |
| HinfI | GANTC | 1 cut(s) | 77 |
| HphI | GGTGA | 2 cut(s) | 152, 530 |
| Hpy166II | GTNNAC | 1 cut(s) | 13 |
| Hpy188I | TCNGA | 1 cut(s) | 125 |
| Hpy188III | TCNNGA | 3 cut(s) | 274, 284, 392 |
| Hpy8I | GTNNAC | 1 cut(s) | 13 |
| HpyAV | CCTTC | 1 cut(s) | 142 |
| HpyCH4III | ACNGT | 4 cut(s) | 17, 55, 180, 415 |
| HpyCH4IV | ACGT | 1 cut(s) | 218 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 270, 423, 547 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 267 |
| HpySE526I | ACGT | 1 cut(s) | 218 |
| Hsp92II | CATG | 4 cut(s) | 270, 406, 542, 564 |
| Kzo9I | GATC | 3 cut(s) | 276, 388, 432 |
| LweI | GCATC | 1 cut(s) | 279 |
| MaeI | CTAG | 1 cut(s) | 150 |
| MaeII | ACGT | 1 cut(s) | 218 |
| MaeIII | GTNAC | 3 cut(s) | 49, 140, 241 |
| MalI | GATC | 3 cut(s) | 278, 390, 434 |
| MboI | GATC | 3 cut(s) | 276, 388, 432 |
| MboII | GAAGA | 1 cut(s) | 350 |
| MflI | RGATCY | 1 cut(s) | 388 |
| MhlI | GDGCHC | 1 cut(s) | 198 |
| MlsI | TGGCCA | 1 cut(s) | 224 |
| MluCI | AATT | 7 cut(s) | 71, 103, 126, 227, 374, 521, 525 |
| MluNI | TGGCCA | 1 cut(s) | 224 |
| MnlI | CCTC | 5 cut(s) | 102, 105, 109, 446, 464 |
| Mox20I | TGGCCA | 1 cut(s) | 224 |
| Mph1103I | ATGCAT | 1 cut(s) | 272 |
| MscI | TGGCCA | 1 cut(s) | 224 |
| MseI | TTAA | 7 cut(s) | 174, 215, 377, 489, 498, 524, 565 |
| Msp20I | TGGCCA | 1 cut(s) | 224 |
| MspCI | CTTAAG | 1 cut(s) | 497 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 267 |
| NdeII | GATC | 3 cut(s) | 276, 388, 432 |
| NlaIII | CATG | 4 cut(s) | 270, 406, 542, 564 |
| NlaIV | GGNNCC | 1 cut(s) | 390 |
| NmuCI | GTSAC | 1 cut(s) | 140 |
| NsiI | ATGCAT | 1 cut(s) | 272 |
| NspI | RCATGY | 1 cut(s) | 270 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 215 |
| PfeI | GAWTC | 1 cut(s) | 77 |
| PshBI | ATTAAT | 1 cut(s) | 524 |
| Psp1406I | AACGTT | 1 cut(s) | 218 |
| PspN4I | GGNNCC | 1 cut(s) | 390 |
| PsuI | RGATCY | 1 cut(s) | 388 |
| RsaI | GTAC | 1 cut(s) | 315 |
| RsaNI | GTAC | 1 cut(s) | 314 |
| SaqAI | TTAA | 7 cut(s) | 174, 215, 377, 489, 498, 524, 565 |
| Sau3AI | GATC | 3 cut(s) | 276, 388, 432 |
| SduI | GDGCHC | 1 cut(s) | 198 |
| SetI | ASST | 5 cut(s) | 134, 151, 221, 319, 556 |
| SfaNI | GCATC | 1 cut(s) | 279 |
| SmlI | CTYRAG | 1 cut(s) | 497 |
| SmoI | CTYRAG | 1 cut(s) | 497 |
| Sse9I | AATT | 7 cut(s) | 71, 103, 126, 227, 374, 521, 525 |
| SspMI | CTAG | 1 cut(s) | 150 |
| TaaI | ACNGT | 4 cut(s) | 17, 55, 180, 415 |
| TaiI | ACGT | 1 cut(s) | 221 |
| TaqII | GACCGA | 1 cut(s) | 355 |
| TasI | AATT | 7 cut(s) | 71, 103, 126, 227, 374, 521, 525 |
| TfiI | GAWTC | 1 cut(s) | 77 |
| Tru1I | TTAA | 7 cut(s) | 174, 215, 377, 489, 498, 524, 565 |
| Tru9I | TTAA | 7 cut(s) | 174, 215, 377, 489, 498, 524, 565 |
| TscAI | CASTG | 5 cut(s) | 70, 198, 420, 430, 520 |
| TseFI | GTSAC | 1 cut(s) | 140 |
| Tsp45I | GTSAC | 1 cut(s) | 140 |
| TspDTI | ATGAA | 3 cut(s) | 318, 419, 440 |
| TspRI | CASTG | 5 cut(s) | 70, 198, 420, 430, 520 |
| Vha464I | CTTAAG | 1 cut(s) | 497 |
| VspI | ATTAAT | 1 cut(s) | 524 |
| XapI | RAATTY | 2 cut(s) | 103, 227 |
| XceI | RCATGY | 1 cut(s) | 270 |
| XspI | CTAG | 1 cut(s) | 150 |
| Zsp2I | ATGCAT | 1 cut(s) | 272 |