DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rep_fac-A_C | PF08646 | 143 - 247 | 7.8e-08 | Replication factor-A C terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 648 |
| AciI | CCGC | 1 cut(s) | 447 |
| AclWI | GGATC | 2 cut(s) | 353, 366 |
| AcsI | RAATTY | 4 cut(s) | 31, 83, 525, 728 |
| AcuI | CTGAAG | 2 cut(s) | 665, 926 |
| AfaI | GTAC | 4 cut(s) | 236, 437, 588, 678 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 465 |
| AgsI | TTSAA | 2 cut(s) | 221, 733 |
| AjnI | CCWGG | 1 cut(s) | 256 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 603, 635 |
| AleI | CACNNNNGTG | 1 cut(s) | 195 |
| AluBI | AGCT | 6 cut(s) | 182, 242, 443, 581, 724, 904 |
| AluI | AGCT | 6 cut(s) | 182, 242, 443, 581, 724, 904 |
| Alw21I | GWGCWC | 1 cut(s) | 726 |
| Alw26I | GTCTC | 2 cut(s) | 146, 883 |
| AlwI | GGATC | 2 cut(s) | 353, 366 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 341, 893 |
| AoxI | GGCC | 1 cut(s) | 254 |
| ApeKI | GCWGC | 1 cut(s) | 867 |
| ApoI | RAATTY | 4 cut(s) | 31, 83, 525, 728 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 99, 412 |
| AspS9I | GGNCC | 1 cut(s) | 456 |
| AsuHPI | GGTGA | 3 cut(s) | 108, 272, 767 |
| AvaII | GGWCC | 1 cut(s) | 456 |
| BamHI | GGATCC | 1 cut(s) | 358 |
| BanII | GRGCYC | 1 cut(s) | 726 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 261, 293 |
| Bbv12I | GWGCWC | 1 cut(s) | 726 |
| BbvI | GCAGC | 1 cut(s) | 879 |
| BciT130I | CCWGG | 1 cut(s) | 258 |
| BclI | TGATCA | 1 cut(s) | 703 |
| BcoDI | GTCTC | 2 cut(s) | 146, 883 |
| BfaI | CTAG | 2 cut(s) | 161, 252 |
| BfmI | CTRYAG | 2 cut(s) | 129, 582 |
| BfuAI | ACCTGC | 1 cut(s) | 648 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 516 |
| BisI | GCNGC | 1 cut(s) | 868 |
| BlsI | GCNGC | 1 cut(s) | 869 |
| BmcAI | AGTACT | 2 cut(s) | 588, 678 |
| Bme1390I | CCNGG | 1 cut(s) | 258 |
| Bme18I | GGWCC | 1 cut(s) | 456 |
| BmgT120I | GGNCC | 1 cut(s) | 456 |
| BmiI | GGNNCC | 3 cut(s) | 6, 360, 457 |
| BmrFI | CCNGG | 1 cut(s) | 258 |
| BmsI | GCATC | 1 cut(s) | 797 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 43, 75 |
| Bsa29I | ATCGAT | 1 cut(s) | 791 |
| BsaJI | CCNNGG | 2 cut(s) | 514, 536 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 465 |
| Bse1I | ACTGG | 4 cut(s) | 119, 138, 360, 684 |
| Bse3DI | GCAATG | 2 cut(s) | 393, 416 |
| BseBI | CCWGG | 1 cut(s) | 258 |
| BseCI | ATCGAT | 1 cut(s) | 791 |
| BseDI | CCNNGG | 2 cut(s) | 514, 536 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 465 |
| BseMI | GCAATG | 2 cut(s) | 393, 416 |
| BseMII | CTCAG | 3 cut(s) | 157, 234, 990 |
| BseNI | ACTGG | 4 cut(s) | 119, 138, 360, 684 |
| BseRI | GAGGAG | 2 cut(s) | 52, 273 |
| BseXI | GCAGC | 1 cut(s) | 879 |
| BsgI | GTGCAG | 1 cut(s) | 654 |
| BshFI | GGCC | 1 cut(s) | 256 |
| BshVI | ATCGAT | 1 cut(s) | 791 |
| BsiHKAI | GWGCWC | 1 cut(s) | 726 |
| BslFI | GGGAC | 3 cut(s) | 463, 469, 518 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 465 |
| BsmAI | GTCTC | 2 cut(s) | 146, 883 |
| BsmFI | GGGAC | 3 cut(s) | 463, 469, 518 |
| BsnI | GGCC | 1 cut(s) | 256 |
| Bsp1286I | GDGCHC | 1 cut(s) | 726 |
| Bsp143I | GATC | 6 cut(s) | 343, 358, 565, 703, 826, 921 |
| Bsp19I | CCATGG | 2 cut(s) | 514, 536 |
| BspACI | CCGC | 1 cut(s) | 447 |
| BspANI | GGCC | 1 cut(s) | 256 |
| BspCNI | CTCAG | 3 cut(s) | 156, 235, 991 |
| BspDI | ATCGAT | 1 cut(s) | 791 |
| BspLI | GGNNCC | 3 cut(s) | 6, 360, 457 |
| BspMI | ACCTGC | 1 cut(s) | 648 |
| BspPI | GGATC | 2 cut(s) | 353, 366 |
| BspQI | GCTCTTC | 1 cut(s) | 909 |
| BsrDI | GCAATG | 2 cut(s) | 393, 416 |
| BsrI | ACTGG | 4 cut(s) | 119, 138, 360, 684 |
| BssECI | CCNNGG | 2 cut(s) | 514, 536 |
| BssMI | GATC | 6 cut(s) | 343, 358, 565, 703, 826, 921 |
| BssT1I | CCWWGG | 2 cut(s) | 514, 536 |
| Bst2UI | CCWGG | 1 cut(s) | 258 |
| Bst4CI | ACNGT | 6 cut(s) | 425, 586, 657, 877, 940, 981 |
| Bst6I | CTCTTC | 3 cut(s) | 842, 902, 909 |
| BstC8I | GCNNGC | 1 cut(s) | 445 |
| BstDEI | CTNAG | 4 cut(s) | 91, 143, 243, 999 |
| BstDSI | CCRYGG | 2 cut(s) | 514, 536 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 463 |
| BstKTI | GATC | 6 cut(s) | 346, 361, 568, 706, 829, 924 |
| BstMAI | GTCTC | 2 cut(s) | 146, 883 |
| BstMBI | GATC | 6 cut(s) | 343, 358, 565, 703, 826, 921 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 516, 925 |
| BstNI | CCWGG | 1 cut(s) | 258 |
| BstSCI | CCNGG | 1 cut(s) | 256 |
| BstSFI | CTRYAG | 2 cut(s) | 129, 582 |
| BstV1I | GCAGC | 1 cut(s) | 879 |
| BstX2I | RGATCY | 1 cut(s) | 358 |
| BstYI | RGATCY | 1 cut(s) | 358 |
| Bsu15I | ATCGAT | 1 cut(s) | 791 |
| BsuRI | GGCC | 1 cut(s) | 256 |
| BsuTUI | ATCGAT | 1 cut(s) | 791 |
| BtgI | CCRYGG | 2 cut(s) | 514, 536 |
| BtgZI | GCGATG | 1 cut(s) | 84 |
| BtsIMutI | CAGTG | 3 cut(s) | 342, 353, 430 |
| BveI | ACCTGC | 1 cut(s) | 648 |
| Cac8I | GCNNGC | 1 cut(s) | 445 |
| CaiI | CAGNNNCTG | 2 cut(s) | 341, 893 |
| Cfr13I | GGNCC | 1 cut(s) | 456 |
| ClaI | ATCGAT | 1 cut(s) | 791 |
| CseI | GACGC | 1 cut(s) | 96 |
| Csp6I | GTAC | 4 cut(s) | 235, 436, 587, 677 |
| CviAII | CATG | 3 cut(s) | 515, 537, 553 |
| CviQI | GTAC | 4 cut(s) | 235, 436, 587, 677 |
| DdeI | CTNAG | 4 cut(s) | 91, 143, 243, 999 |
| DpnI | GATC | 6 cut(s) | 345, 360, 567, 705, 828, 923 |
| DpnII | GATC | 6 cut(s) | 343, 358, 565, 703, 826, 921 |
| Eam1104I | CTCTTC | 3 cut(s) | 842, 902, 909 |
| EarI | CTCTTC | 3 cut(s) | 842, 902, 909 |
| Ecl136II | GAGCTC | 1 cut(s) | 724 |
| Eco130I | CCWWGG | 2 cut(s) | 514, 536 |
| Eco24I | GRGCYC | 1 cut(s) | 726 |
| Eco47I | GGWCC | 1 cut(s) | 456 |
| Eco53kI | GAGCTC | 1 cut(s) | 724 |
| Eco57I | CTGAAG | 2 cut(s) | 665, 926 |
| EcoICRI | GAGCTC | 1 cut(s) | 724 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 463 |
| EcoO109I | RGGNCCY | 1 cut(s) | 456 |
| EcoRII | CCWGG | 1 cut(s) | 256 |
| EcoT14I | CCWWGG | 2 cut(s) | 514, 536 |
| EcoT38I | GRGCYC | 1 cut(s) | 726 |
| ErhI | CCWWGG | 2 cut(s) | 514, 536 |
| FaeI | CATG | 3 cut(s) | 518, 540, 556 |
| FaqI | GGGAC | 3 cut(s) | 463, 469, 518 |
| FatI | CATG | 3 cut(s) | 514, 536, 552 |
| FauI | CCCGC | 1 cut(s) | 440 |
| FbaI | TGATCA | 1 cut(s) | 703 |
| Fnu4HI | GCNGC | 1 cut(s) | 868 |
| FriOI | GRGCYC | 1 cut(s) | 726 |
| Fsp4HI | GCNGC | 1 cut(s) | 868 |
| FspBI | CTAG | 2 cut(s) | 161, 252 |
| GluI | GCNGC | 1 cut(s) | 868 |
| HaeIII | GGCC | 1 cut(s) | 256 |
| HgaI | GACGC | 1 cut(s) | 96 |
| Hin1II | CATG | 3 cut(s) | 518, 540, 556 |
| HindIII | AAGCTT | 1 cut(s) | 441 |
| HinfI | GANTC | 4 cut(s) | 54, 217, 365, 890 |
| HphI | GGTGA | 3 cut(s) | 108, 272, 767 |
| Hpy166II | GTNNAC | 1 cut(s) | 550 |
| Hpy188I | TCNGA | 5 cut(s) | 146, 343, 407, 889, 895 |
| Hpy188III | TCNNGA | 2 cut(s) | 212, 362 |
| Hpy8I | GTNNAC | 1 cut(s) | 550 |
| Hpy99I | CGWCG | 1 cut(s) | 112 |
| HpyAV | CCTTC | 2 cut(s) | 402, 643 |
| HpyCH4III | ACNGT | 6 cut(s) | 425, 586, 657, 877, 940, 981 |
| HpyCH4V | TGCA | 6 cut(s) | 349, 393, 421, 635, 691, 788 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 516, 925 |
| HpyF3I | CTNAG | 4 cut(s) | 91, 143, 243, 999 |
| Hsp92II | CATG | 3 cut(s) | 518, 540, 556 |
| Ksp22I | TGATCA | 1 cut(s) | 703 |
| Kzo9I | GATC | 6 cut(s) | 343, 358, 565, 703, 826, 921 |
| LguI | GCTCTTC | 1 cut(s) | 909 |
| LmnI | GCTCC | 1 cut(s) | 864 |
| Lsp1109I | GCAGC | 1 cut(s) | 879 |
| LweI | GCATC | 1 cut(s) | 797 |
| MaeI | CTAG | 2 cut(s) | 161, 252 |
| MaeIII | GTNAC | 1 cut(s) | 133 |
| MalI | GATC | 6 cut(s) | 345, 360, 567, 705, 828, 923 |
| MboI | GATC | 6 cut(s) | 343, 358, 565, 703, 826, 921 |
| MboII | GAAGA | 8 cut(s) | 56, 491, 658, 695, 757, 859, 919, 926 |
| MflI | RGATCY | 1 cut(s) | 358 |
| MhlI | GDGCHC | 1 cut(s) | 726 |
| MluCI | AATT | 7 cut(s) | 31, 83, 155, 168, 525, 558, 728 |
| MnlI | CCTC | 8 cut(s) | 30, 124, 291, 294, 598, 793, 853, 958 |
| MroXI | GAANNNNTTC | 2 cut(s) | 99, 412 |
| MseI | TTAA | 2 cut(s) | 291, 501 |
| MslI | CAYNNNNRTG | 1 cut(s) | 195 |
| MspR9I | CCNGG | 1 cut(s) | 258 |
| MvaI | CCWGG | 1 cut(s) | 258 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 516, 925 |
| NcoI | CCATGG | 2 cut(s) | 514, 536 |
| NdeII | GATC | 6 cut(s) | 343, 358, 565, 703, 826, 921 |
| NlaIII | CATG | 3 cut(s) | 518, 540, 556 |
| NlaIV | GGNNCC | 3 cut(s) | 6, 360, 457 |
| NmuCI | GTSAC | 1 cut(s) | 133 |
| OliI | CACNNNNGTG | 1 cut(s) | 195 |
| PciSI | GCTCTTC | 1 cut(s) | 909 |
| PdmI | GAANNNNTTC | 2 cut(s) | 99, 412 |
| PfeI | GAWTC | 4 cut(s) | 54, 217, 365, 890 |
| PkrI | GCNGC | 1 cut(s) | 869 |
| PpuMI | RGGWCCY | 1 cut(s) | 456 |
| Psp124BI | GAGCTC | 1 cut(s) | 726 |
| Psp5II | RGGWCCY | 1 cut(s) | 456 |
| Psp6I | CCWGG | 1 cut(s) | 256 |
| PspGI | CCWGG | 1 cut(s) | 256 |
| PspN4I | GGNNCC | 3 cut(s) | 6, 360, 457 |
| PspPI | GGNCC | 1 cut(s) | 456 |
| PspPPI | RGGWCCY | 1 cut(s) | 456 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 660, 692 |
| PstNI | CAGNNNCTG | 2 cut(s) | 341, 893 |
| PsuI | RGATCY | 1 cut(s) | 358 |
| RsaI | GTAC | 4 cut(s) | 236, 437, 588, 678 |
| RsaNI | GTAC | 4 cut(s) | 235, 436, 587, 677 |
| RseI | CAYNNNNRTG | 1 cut(s) | 195 |
| SacI | GAGCTC | 1 cut(s) | 726 |
| SapI | GCTCTTC | 1 cut(s) | 909 |
| SaqAI | TTAA | 2 cut(s) | 291, 501 |
| SatI | GCNGC | 1 cut(s) | 868 |
| Sau3AI | GATC | 6 cut(s) | 343, 358, 565, 703, 826, 921 |
| Sau96I | GGNCC | 1 cut(s) | 456 |
| ScaI | AGTACT | 2 cut(s) | 588, 678 |
| ScrFI | CCNGG | 1 cut(s) | 258 |
| SduI | GDGCHC | 1 cut(s) | 726 |
| SfaNI | GCATC | 1 cut(s) | 797 |
| SfcI | CTRYAG | 2 cut(s) | 129, 582 |
| SinI | GGWCC | 1 cut(s) | 456 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 195 |
| Sse9I | AATT | 7 cut(s) | 31, 83, 155, 168, 525, 558, 728 |
| SsiI | CCGC | 1 cut(s) | 447 |
| SspMI | CTAG | 2 cut(s) | 161, 252 |
| SstI | GAGCTC | 1 cut(s) | 726 |
| StyD4I | CCNGG | 1 cut(s) | 256 |
| StyI | CCWWGG | 2 cut(s) | 514, 536 |
| TaaI | ACNGT | 6 cut(s) | 425, 586, 657, 877, 940, 981 |
| TaqI | TCGA | 3 cut(s) | 87, 103, 791 |
| TasI | AATT | 7 cut(s) | 31, 83, 155, 168, 525, 558, 728 |
| TatI | WGTACW | 3 cut(s) | 234, 586, 676 |
| TfiI | GAWTC | 4 cut(s) | 54, 217, 365, 890 |
| Tru1I | TTAA | 2 cut(s) | 291, 501 |
| Tru9I | TTAA | 2 cut(s) | 291, 501 |
| TscAI | CASTG | 3 cut(s) | 342, 360, 430 |
| TseFI | GTSAC | 1 cut(s) | 133 |
| TseI | GCWGC | 1 cut(s) | 867 |
| Tsp45I | GTSAC | 1 cut(s) | 133 |
| TspDTI | ATGAA | 5 cut(s) | 193, 357, 405, 752, 999 |
| TspRI | CASTG | 3 cut(s) | 342, 360, 430 |
| VpaK11BI | GGWCC | 1 cut(s) | 456 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 463 |
| XapI | RAATTY | 4 cut(s) | 31, 83, 525, 728 |
| XmnI | GAANNNNTTC | 2 cut(s) | 99, 412 |
| XspI | CTAG | 2 cut(s) | 161, 252 |
| ZrmI | AGTACT | 2 cut(s) | 588, 678 |