DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 60 |
| AclWI | GGATC | 2 cut(s) | 327, 340 |
| AcoI | YGGCCR | 2 cut(s) | 39, 88 |
| AcsI | RAATTY | 1 cut(s) | 6 |
| AfaI | GTAC | 1 cut(s) | 187 |
| AgsI | TTSAA | 1 cut(s) | 33 |
| AluBI | AGCT | 1 cut(s) | 212 |
| AluI | AGCT | 1 cut(s) | 212 |
| Alw26I | GTCTC | 1 cut(s) | 17 |
| AlwI | GGATC | 2 cut(s) | 327, 340 |
| AoxI | GGCC | 2 cut(s) | 39, 88 |
| ApoI | RAATTY | 1 cut(s) | 6 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 197, 234 |
| AsuHPI | GGTGA | 2 cut(s) | 230, 291 |
| BalI | TGGCCA | 2 cut(s) | 41, 90 |
| BamHI | GGATCC | 1 cut(s) | 332 |
| BbsI | GAAGAC | 2 cut(s) | 30, 266 |
| BcoDI | GTCTC | 1 cut(s) | 17 |
| BfaI | CTAG | 1 cut(s) | 389 |
| BmiI | GGNNCC | 1 cut(s) | 334 |
| BmsI | GCATC | 1 cut(s) | 353 |
| BpiI | GAAGAC | 2 cut(s) | 30, 266 |
| Bse1I | ACTGG | 1 cut(s) | 91 |
| BseGI | GGATG | 3 cut(s) | 126, 138, 368 |
| BseMII | CTCAG | 1 cut(s) | 308 |
| BseNI | ACTGG | 1 cut(s) | 91 |
| BshFI | GGCC | 2 cut(s) | 41, 90 |
| BsmAI | GTCTC | 1 cut(s) | 17 |
| BsmBI | CGTCTC | 1 cut(s) | 17 |
| BsnI | GGCC | 2 cut(s) | 41, 90 |
| Bsp143I | GATC | 1 cut(s) | 332 |
| BspACI | CCGC | 1 cut(s) | 60 |
| BspANI | GGCC | 2 cut(s) | 41, 90 |
| BspCNI | CTCAG | 1 cut(s) | 309 |
| BspLI | GGNNCC | 1 cut(s) | 334 |
| BspPI | GGATC | 2 cut(s) | 327, 340 |
| BsrI | ACTGG | 1 cut(s) | 91 |
| BssMI | GATC | 1 cut(s) | 332 |
| Bst4CI | ACNGT | 2 cut(s) | 124, 327 |
| BstDEI | CTNAG | 1 cut(s) | 317 |
| BstEII | GGTNACC | 1 cut(s) | 297 |
| BstF5I | GGATG | 3 cut(s) | 126, 138, 368 |
| BstKTI | GATC | 1 cut(s) | 335 |
| BstMAI | GTCTC | 1 cut(s) | 17 |
| BstMBI | GATC | 1 cut(s) | 332 |
| BstPI | GGTNACC | 1 cut(s) | 297 |
| BstV2I | GAAGAC | 2 cut(s) | 30, 266 |
| BstX2I | RGATCY | 1 cut(s) | 332 |
| BstYI | RGATCY | 1 cut(s) | 332 |
| BsuRI | GGCC | 2 cut(s) | 41, 90 |
| BtsCI | GGATG | 3 cut(s) | 126, 138, 368 |
| BtsIMutI | CAGTG | 1 cut(s) | 225 |
| Csp6I | GTAC | 1 cut(s) | 186 |
| CviAII | CATG | 3 cut(s) | 43, 202, 294 |
| CviJI | RGCY | 3 cut(s) | 41, 90, 212 |
| CviKI_1 | RGCY | 3 cut(s) | 41, 90, 212 |
| CviQI | GTAC | 1 cut(s) | 186 |
| DdeI | CTNAG | 1 cut(s) | 317 |
| DpnI | GATC | 1 cut(s) | 334 |
| DpnII | GATC | 1 cut(s) | 332 |
| EaeI | YGGCCR | 2 cut(s) | 39, 88 |
| Eco91I | GGTNACC | 1 cut(s) | 297 |
| EcoO65I | GGTNACC | 1 cut(s) | 297 |
| Esp3I | CGTCTC | 1 cut(s) | 17 |
| FaeI | CATG | 3 cut(s) | 46, 205, 297 |
| FaiI | YATR | 5 cut(s) | 44, 50, 169, 203, 295 |
| FatI | CATG | 3 cut(s) | 42, 201, 293 |
| FauI | CCCGC | 1 cut(s) | 67 |
| FokI | GGATG | 3 cut(s) | 113, 125, 375 |
| FspBI | CTAG | 1 cut(s) | 389 |
| HaeIII | GGCC | 2 cut(s) | 41, 90 |
| Hin1II | CATG | 3 cut(s) | 46, 205, 297 |
| HincII | GTYRAC | 1 cut(s) | 323 |
| HindII | GTYRAC | 1 cut(s) | 323 |
| HinfI | GANTC | 2 cut(s) | 29, 319 |
| HphI | GGTGA | 2 cut(s) | 230, 291 |
| Hpy166II | GTNNAC | 3 cut(s) | 217, 238, 323 |
| Hpy188I | TCNGA | 3 cut(s) | 77, 268, 318 |
| Hpy188III | TCNNGA | 2 cut(s) | 14, 130 |
| Hpy8I | GTNNAC | 3 cut(s) | 217, 238, 323 |
| HpyAV | CCTTC | 1 cut(s) | 98 |
| HpyCH4III | ACNGT | 2 cut(s) | 124, 327 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 154, 366 |
| HpyF3I | CTNAG | 1 cut(s) | 317 |
| Hsp92II | CATG | 3 cut(s) | 46, 205, 297 |
| Kzo9I | GATC | 1 cut(s) | 332 |
| LpnPI | CCDG | 4 cut(s) | 23, 97, 104, 345 |
| LweI | GCATC | 1 cut(s) | 353 |
| MaeI | CTAG | 1 cut(s) | 389 |
| MaeIII | GTNAC | 1 cut(s) | 297 |
| MalI | GATC | 1 cut(s) | 334 |
| MboI | GATC | 1 cut(s) | 332 |
| MboII | GAAGA | 6 cut(s) | 29, 35, 184, 263, 271, 352 |
| MflI | RGATCY | 1 cut(s) | 332 |
| MlsI | TGGCCA | 2 cut(s) | 41, 90 |
| MluCI | AATT | 1 cut(s) | 6 |
| MluNI | TGGCCA | 2 cut(s) | 41, 90 |
| MlyI | GAGTC | 1 cut(s) | 328 |
| MnlI | CCTC | 2 cut(s) | 289, 349 |
| Mox20I | TGGCCA | 2 cut(s) | 41, 90 |
| MroXI | GAANNNNTTC | 2 cut(s) | 197, 234 |
| MscI | TGGCCA | 2 cut(s) | 41, 90 |
| Msp20I | TGGCCA | 2 cut(s) | 41, 90 |
| NdeII | GATC | 1 cut(s) | 332 |
| NlaIII | CATG | 3 cut(s) | 46, 205, 297 |
| NlaIV | GGNNCC | 1 cut(s) | 334 |
| NmuCI | GTSAC | 1 cut(s) | 297 |
| PdmI | GAANNNNTTC | 2 cut(s) | 197, 234 |
| PfeI | GAWTC | 1 cut(s) | 29 |
| PleI | GAGTC | 1 cut(s) | 327 |
| PpsI | GAGTC | 1 cut(s) | 327 |
| PspEI | GGTNACC | 1 cut(s) | 297 |
| PspN4I | GGNNCC | 1 cut(s) | 334 |
| PsuI | RGATCY | 1 cut(s) | 332 |
| RsaI | GTAC | 1 cut(s) | 187 |
| RsaNI | GTAC | 1 cut(s) | 186 |
| Sau3AI | GATC | 1 cut(s) | 332 |
| SchI | GAGTC | 1 cut(s) | 328 |
| SetI | ASST | 2 cut(s) | 214, 237 |
| SfaNI | GCATC | 1 cut(s) | 353 |
| Sse9I | AATT | 1 cut(s) | 6 |
| SsiI | CCGC | 1 cut(s) | 60 |
| SspMI | CTAG | 1 cut(s) | 389 |
| TaaI | ACNGT | 2 cut(s) | 124, 327 |
| TaqI | TCGA | 1 cut(s) | 15 |
| TasI | AATT | 1 cut(s) | 6 |
| TfiI | GAWTC | 1 cut(s) | 29 |
| TscAI | CASTG | 1 cut(s) | 232 |
| TseFI | GTSAC | 1 cut(s) | 297 |
| Tsp45I | GTSAC | 1 cut(s) | 297 |
| TspDTI | ATGAA | 3 cut(s) | 36, 117, 190 |
| TspRI | CASTG | 1 cut(s) | 232 |
| XapI | RAATTY | 1 cut(s) | 6 |
| XmnI | GAANNNNTTC | 2 cut(s) | 197, 234 |
| XspI | CTAG | 1 cut(s) | 389 |