DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rep_fac-A_C | PF08646 | 68 - 174 | 4.2e-11 | Replication factor-A C terminal domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 323 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 237 |
| AciI | CCGC | 2 cut(s) | 201, 262 |
| AclWI | GGATC | 2 cut(s) | 158, 171 |
| AfaI | GTAC | 3 cut(s) | 242, 269, 307 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 237 |
| AgsI | TTSAA | 4 cut(s) | 323, 362, 485, 520 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 402, 434 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 459, 491 |
| AluBI | AGCT | 4 cut(s) | 73, 346, 407, 429 |
| AluI | AGCT | 4 cut(s) | 73, 346, 407, 429 |
| Alw26I | GTCTC | 1 cut(s) | 4 |
| AlwI | GGATC | 2 cut(s) | 158, 171 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 50 |
| AspLEI | GCGC | 1 cut(s) | 160 |
| AsuC2I | CCSGG | 1 cut(s) | 63 |
| AsuHPI | GGTGA | 3 cut(s) | 19, 77, 454 |
| BamHI | GGATCC | 1 cut(s) | 163 |
| BbsI | GAAGAC | 2 cut(s) | 16, 291 |
| BccI | CCATC | 1 cut(s) | 13 |
| BcnI | CCSGG | 1 cut(s) | 63 |
| BcoDI | GTCTC | 1 cut(s) | 4 |
| BglII | AGATCT | 1 cut(s) | 189 |
| BisI | GCNGC | 2 cut(s) | 201, 262 |
| BlsI | GCNGC | 2 cut(s) | 202, 263 |
| Bme1390I | CCNGG | 1 cut(s) | 63 |
| BmiI | GGNNCC | 1 cut(s) | 165 |
| BmrFI | CCNGG | 1 cut(s) | 63 |
| BmrI | ACTGGG | 1 cut(s) | 473 |
| BmsI | GCATC | 2 cut(s) | 309, 432 |
| BmuI | ACTGGG | 1 cut(s) | 473 |
| BpiI | GAAGAC | 2 cut(s) | 16, 291 |
| BpuMI | CCSGG | 1 cut(s) | 63 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 459, 489 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 237 |
| Bse1I | ACTGG | 2 cut(s) | 444, 479 |
| BseGI | GGATG | 1 cut(s) | 254 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 237 |
| BseNI | ACTGG | 2 cut(s) | 444, 479 |
| BsiSI | CCGG | 1 cut(s) | 62 |
| BslFI | GGGAC | 1 cut(s) | 311 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 237 |
| BsmAI | GTCTC | 1 cut(s) | 4 |
| BsmBI | CGTCTC | 1 cut(s) | 4 |
| BsmFI | GGGAC | 1 cut(s) | 311 |
| Bsp143I | GATC | 2 cut(s) | 163, 189 |
| BspACI | CCGC | 2 cut(s) | 201, 262 |
| BspLI | GGNNCC | 1 cut(s) | 165 |
| BspPI | GGATC | 2 cut(s) | 158, 171 |
| BsrI | ACTGG | 2 cut(s) | 444, 479 |
| BssMI | GATC | 2 cut(s) | 163, 189 |
| Bst4CI | ACNGT | 1 cut(s) | 385 |
| Bst6I | CTCTTC | 2 cut(s) | 108, 336 |
| BstF5I | GGATG | 1 cut(s) | 254 |
| BstHHI | GCGC | 1 cut(s) | 160 |
| BstKTI | GATC | 2 cut(s) | 166, 192 |
| BstMAI | GTCTC | 1 cut(s) | 4 |
| BstMBI | GATC | 2 cut(s) | 163, 189 |
| BstNSI | RCATGY | 1 cut(s) | 497 |
| BstSCI | CCNGG | 1 cut(s) | 61 |
| BstV2I | GAAGAC | 2 cut(s) | 16, 291 |
| BstX2I | RGATCY | 2 cut(s) | 163, 189 |
| BstYI | RGATCY | 2 cut(s) | 163, 189 |
| BtsCI | GGATG | 1 cut(s) | 254 |
| BtsIMutI | CAGTG | 1 cut(s) | 302 |
| CfoI | GCGC | 1 cut(s) | 160 |
| Csp6I | GTAC | 3 cut(s) | 241, 268, 306 |
| CviAII | CATG | 5 cut(s) | 178, 314, 336, 352, 494 |
| CviJI | RGCY | 5 cut(s) | 73, 140, 346, 407, 429 |
| CviKI_1 | RGCY | 5 cut(s) | 73, 140, 346, 407, 429 |
| CviQI | GTAC | 3 cut(s) | 241, 268, 306 |
| DpnI | GATC | 2 cut(s) | 165, 191 |
| DpnII | GATC | 2 cut(s) | 163, 189 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 323 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 323 |
| Eam1104I | CTCTTC | 2 cut(s) | 108, 336 |
| EarI | CTCTTC | 2 cut(s) | 108, 336 |
| Esp3I | CGTCTC | 1 cut(s) | 4 |
| FaeI | CATG | 5 cut(s) | 181, 317, 339, 355, 497 |
| FaiI | YATR | 9 cut(s) | 32, 175, 179, 222, 228, 315, 337, 353, 495 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 315, 347 |
| FaqI | GGGAC | 1 cut(s) | 311 |
| FatI | CATG | 5 cut(s) | 177, 313, 335, 351, 493 |
| Fnu4HI | GCNGC | 2 cut(s) | 201, 262 |
| FokI | GGATG | 1 cut(s) | 261 |
| Fsp4HI | GCNGC | 2 cut(s) | 201, 262 |
| GlaI | GCGC | 1 cut(s) | 159 |
| GluI | GCNGC | 2 cut(s) | 201, 262 |
| HapII | CCGG | 1 cut(s) | 62 |
| HhaI | GCGC | 1 cut(s) | 160 |
| Hin1II | CATG | 5 cut(s) | 181, 317, 339, 355, 497 |
| Hin6I | GCGC | 1 cut(s) | 158 |
| HinP1I | GCGC | 1 cut(s) | 158 |
| HindIII | AAGCTT | 1 cut(s) | 344 |
| HinfI | GANTC | 2 cut(s) | 51, 82 |
| HpaII | CCGG | 1 cut(s) | 62 |
| HphI | GGTGA | 3 cut(s) | 19, 77, 454 |
| Hpy188I | TCNGA | 2 cut(s) | 148, 436 |
| Hpy188III | TCNNGA | 2 cut(s) | 96, 461 |
| HpyAV | CCTTC | 2 cut(s) | 401, 493 |
| HpyCH4III | ACNGT | 1 cut(s) | 385 |
| HpyCH4V | TGCA | 1 cut(s) | 300 |
| Hsp92II | CATG | 5 cut(s) | 181, 317, 339, 355, 497 |
| HspAI | GCGC | 1 cut(s) | 158 |
| Kzo9I | GATC | 2 cut(s) | 163, 189 |
| LpnPI | CCDG | 5 cut(s) | 75, 146, 425, 474, 492 |
| LweI | GCATC | 2 cut(s) | 309, 432 |
| MaeIII | GTNAC | 2 cut(s) | 65, 338 |
| MalI | GATC | 2 cut(s) | 165, 191 |
| MboI | GATC | 2 cut(s) | 163, 189 |
| MboII | GAAGA | 7 cut(s) | 16, 122, 125, 199, 296, 323, 374 |
| MfeI | CAATTG | 2 cut(s) | 232, 357 |
| MflI | RGATCY | 2 cut(s) | 163, 189 |
| MluCI | AATT | 4 cut(s) | 170, 232, 357, 486 |
| MnlI | CCTC | 2 cut(s) | 109, 339 |
| MroXI | GAANNNNTTC | 1 cut(s) | 50 |
| MspA1I | CMGCKG | 1 cut(s) | 429 |
| MspI | CCGG | 1 cut(s) | 62 |
| MspR9I | CCNGG | 1 cut(s) | 63 |
| MunI | CAATTG | 2 cut(s) | 232, 357 |
| NciI | CCSGG | 1 cut(s) | 63 |
| NdeII | GATC | 2 cut(s) | 163, 189 |
| NlaIII | CATG | 5 cut(s) | 181, 317, 339, 355, 497 |
| NlaIV | GGNNCC | 1 cut(s) | 165 |
| NmuCI | GTSAC | 1 cut(s) | 65 |
| NspI | RCATGY | 1 cut(s) | 497 |
| PdmI | GAANNNNTTC | 1 cut(s) | 50 |
| PfeI | GAWTC | 2 cut(s) | 51, 82 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 237 |
| PkrI | GCNGC | 2 cut(s) | 202, 263 |
| PspN4I | GGNNCC | 1 cut(s) | 165 |
| PsuI | RGATCY | 2 cut(s) | 163, 189 |
| PvuII | CAGCTG | 1 cut(s) | 429 |
| RsaI | GTAC | 3 cut(s) | 242, 269, 307 |
| RsaNI | GTAC | 3 cut(s) | 241, 268, 306 |
| SatI | GCNGC | 2 cut(s) | 201, 262 |
| Sau3AI | GATC | 2 cut(s) | 163, 189 |
| ScrFI | CCNGG | 1 cut(s) | 63 |
| SetI | ASST | 6 cut(s) | 75, 273, 348, 409, 431, 504 |
| SfaNI | GCATC | 2 cut(s) | 309, 432 |
| Sse9I | AATT | 4 cut(s) | 170, 232, 357, 486 |
| SsiI | CCGC | 2 cut(s) | 201, 262 |
| StyD4I | CCNGG | 1 cut(s) | 61 |
| TaaI | ACNGT | 1 cut(s) | 385 |
| TasI | AATT | 4 cut(s) | 170, 232, 357, 486 |
| TauI | GCSGC | 2 cut(s) | 203, 264 |
| TfiI | GAWTC | 2 cut(s) | 51, 82 |
| TscAI | CASTG | 1 cut(s) | 302 |
| TseFI | GTSAC | 1 cut(s) | 65 |
| Tsp45I | GTSAC | 1 cut(s) | 65 |
| TspDTI | ATGAA | 5 cut(s) | 59, 194, 209, 444, 480 |
| TspGWI | ACGGA | 1 cut(s) | 81 |
| TspRI | CASTG | 1 cut(s) | 302 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 237 |
| XceI | RCATGY | 1 cut(s) | 497 |
| XmnI | GAANNNNTTC | 1 cut(s) | 50 |