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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 199 |
| AccIII | TCCGGA | 1 cut(s) | 345 |
| AciI | CCGC | 2 cut(s) | 560, 587 |
| AclWI | GGATC | 4 cut(s) | 281, 965, 1118, 1131 |
| AcoI | YGGCCR | 1 cut(s) | 609 |
| AcsI | RAATTY | 4 cut(s) | 201, 596, 991, 1025 |
| AcuI | CTGAAG | 1 cut(s) | 1035 |
| AfaI | GTAC | 3 cut(s) | 526, 946, 1136 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 679 |
| AgeI | ACCGGT | 1 cut(s) | 947 |
| AgsI | TTSAA | 3 cut(s) | 389, 406, 491 |
| AjnI | CCWGG | 2 cut(s) | 376, 1056 |
| AluBI | AGCT | 4 cut(s) | 401, 494, 845, 1070 |
| AluI | AGCT | 4 cut(s) | 401, 494, 845, 1070 |
| Alw21I | GWGCWC | 1 cut(s) | 786 |
| Alw26I | GTCTC | 1 cut(s) | 38 |
| Alw44I | GTGCAC | 1 cut(s) | 782 |
| AlwI | GGATC | 4 cut(s) | 281, 965, 1118, 1131 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 383 |
| Aor13HI | TCCGGA | 1 cut(s) | 345 |
| AoxI | GGCC | 1 cut(s) | 609 |
| ApaLI | GTGCAC | 1 cut(s) | 782 |
| ApeKI | GCWGC | 1 cut(s) | 228 |
| ApoI | RAATTY | 4 cut(s) | 201, 596, 991, 1025 |
| AseI | ATTAAT | 1 cut(s) | 753 |
| AsiGI | ACCGGT | 1 cut(s) | 947 |
| AspA2I | CCTAGG | 1 cut(s) | 922 |
| AsuC2I | CCSGG | 1 cut(s) | 983 |
| AsuHPI | GGTGA | 2 cut(s) | 28, 509 |
| AvrII | CCTAGG | 1 cut(s) | 922 |
| BaeGI | GKGCMC | 1 cut(s) | 786 |
| BalI | TGGCCA | 1 cut(s) | 611 |
| BamHI | GGATCC | 1 cut(s) | 1123 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 57, 89 |
| BbsI | GAAGAC | 2 cut(s) | 107, 1041 |
| Bbv12I | GWGCWC | 1 cut(s) | 786 |
| BbvI | GCAGC | 1 cut(s) | 215 |
| BccI | CCATC | 2 cut(s) | 635, 645 |
| BceAI | ACGGC | 1 cut(s) | 422 |
| BciT130I | CCWGG | 2 cut(s) | 378, 1058 |
| BcnI | CCSGG | 1 cut(s) | 983 |
| BcoDI | GTCTC | 1 cut(s) | 38 |
| BfaI | CTAG | 1 cut(s) | 923 |
| BfmI | CTRYAG | 1 cut(s) | 1079 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 443 |
| BisI | GCNGC | 1 cut(s) | 229 |
| BlnI | CCTAGG | 1 cut(s) | 922 |
| BlsI | GCNGC | 1 cut(s) | 230 |
| Bme1390I | CCNGG | 3 cut(s) | 378, 983, 1058 |
| BmiI | GGNNCC | 1 cut(s) | 1125 |
| BmrFI | CCNGG | 3 cut(s) | 378, 983, 1058 |
| BmsI | GCATC | 1 cut(s) | 424 |
| BpiI | GAAGAC | 2 cut(s) | 107, 1041 |
| BpuEI | CTTGAG | 1 cut(s) | 555 |
| BpuMI | CCSGG | 1 cut(s) | 983 |
| BsaJI | CCNNGG | 3 cut(s) | 376, 735, 922 |
| BsaWI | WCCGGW | 2 cut(s) | 345, 947 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 679 |
| Bse118I | RCCGGY | 1 cut(s) | 947 |
| Bse1I | ACTGG | 2 cut(s) | 528, 612 |
| BseAI | TCCGGA | 1 cut(s) | 345 |
| BseBI | CCWGG | 2 cut(s) | 378, 1058 |
| BseDI | CCNNGG | 3 cut(s) | 376, 735, 922 |
| BseGI | GGATG | 3 cut(s) | 627, 693, 978 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 679 |
| BseMII | CTCAG | 2 cut(s) | 137, 172 |
| BseNI | ACTGG | 2 cut(s) | 528, 612 |
| BseSI | GKGCMC | 1 cut(s) | 786 |
| BseXI | GCAGC | 1 cut(s) | 215 |
| Bsh1236I | CGCG | 1 cut(s) | 199 |
| BshFI | GGCC | 1 cut(s) | 611 |
| BshTI | ACCGGT | 1 cut(s) | 947 |
| BsiHKAI | GWGCWC | 1 cut(s) | 786 |
| BsiSI | CCGG | 3 cut(s) | 346, 948, 983 |
| BslFI | GGGAC | 2 cut(s) | 542, 555 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 679 |
| BsmAI | GTCTC | 1 cut(s) | 38 |
| BsmFI | GGGAC | 2 cut(s) | 542, 555 |
| BsmI | GAATGC | 1 cut(s) | 506 |
| BsnI | GGCC | 1 cut(s) | 611 |
| Bsp1286I | GDGCHC | 1 cut(s) | 786 |
| Bsp13I | TCCGGA | 1 cut(s) | 345 |
| Bsp1407I | TGTACA | 1 cut(s) | 1134 |
| Bsp143I | GATC | 4 cut(s) | 55, 273, 970, 1123 |
| Bsp68I | TCGCGA | 1 cut(s) | 199 |
| BspACI | CCGC | 2 cut(s) | 560, 587 |
| BspANI | GGCC | 1 cut(s) | 611 |
| BspCNI | CTCAG | 2 cut(s) | 136, 171 |
| BspEI | TCCGGA | 1 cut(s) | 345 |
| BspFNI | CGCG | 1 cut(s) | 199 |
| BspLI | GGNNCC | 1 cut(s) | 1125 |
| BspPI | GGATC | 4 cut(s) | 281, 965, 1118, 1131 |
| BsrFI | RCCGGY | 1 cut(s) | 947 |
| BsrGI | TGTACA | 1 cut(s) | 1134 |
| BsrI | ACTGG | 2 cut(s) | 528, 612 |
| BssAI | RCCGGY | 1 cut(s) | 947 |
| BssECI | CCNNGG | 3 cut(s) | 376, 735, 922 |
| BssMI | GATC | 4 cut(s) | 55, 273, 970, 1123 |
| BssT1I | CCWWGG | 2 cut(s) | 735, 922 |
| Bst2UI | CCWGG | 2 cut(s) | 378, 1058 |
| Bst4CI | ACNGT | 9 cut(s) | 28, 179, 222, 385, 410, 732, 817, 944, 960 |
| BstAUI | TGTACA | 1 cut(s) | 1134 |
| BstC8I | GCNNGC | 2 cut(s) | 187, 268 |
| BstDEI | CTNAG | 2 cut(s) | 123, 158 |
| BstF5I | GGATG | 3 cut(s) | 627, 693, 978 |
| BstFNI | CGCG | 1 cut(s) | 199 |
| BstKTI | GATC | 4 cut(s) | 58, 276, 973, 1126 |
| BstMAI | GTCTC | 1 cut(s) | 38 |
| BstMBI | GATC | 4 cut(s) | 55, 273, 970, 1123 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 443, 924, 1067 |
| BstNI | CCWGG | 2 cut(s) | 378, 1058 |
| BstSCI | CCNGG | 3 cut(s) | 376, 981, 1056 |
| BstSFI | CTRYAG | 1 cut(s) | 1079 |
| BstSLI | GKGCMC | 1 cut(s) | 786 |
| BstUI | CGCG | 1 cut(s) | 199 |
| BstV1I | GCAGC | 1 cut(s) | 215 |
| BstV2I | GAAGAC | 2 cut(s) | 107, 1041 |
| BstX2I | RGATCY | 1 cut(s) | 1123 |
| BstYI | RGATCY | 1 cut(s) | 1123 |
| BsuRI | GGCC | 1 cut(s) | 611 |
| BtsCI | GGATG | 3 cut(s) | 627, 693, 978 |
| BtsI | GCAGTG | 1 cut(s) | 875 |
| BtsIMutI | CAGTG | 6 cut(s) | 175, 381, 619, 875, 956, 1011 |
| BtuMI | TCGCGA | 1 cut(s) | 199 |
| Cac8I | GCNNGC | 2 cut(s) | 187, 268 |
| CaiI | CAGNNNCTG | 1 cut(s) | 383 |
| Cfr10I | RCCGGY | 1 cut(s) | 947 |
| CseI | GACGC | 1 cut(s) | 924 |
| Csp6I | GTAC | 3 cut(s) | 525, 945, 1135 |
| CspAI | ACCGGT | 1 cut(s) | 947 |
| CviAII | CATG | 1 cut(s) | 563 |
| CviQI | GTAC | 3 cut(s) | 525, 945, 1135 |
| DdeI | CTNAG | 2 cut(s) | 123, 158 |
| DpnI | GATC | 4 cut(s) | 57, 275, 972, 1125 |
| DpnII | GATC | 4 cut(s) | 55, 273, 970, 1123 |
| DraI | TTTAAA | 2 cut(s) | 601, 906 |
| EaeI | YGGCCR | 1 cut(s) | 609 |
| Eco130I | CCWWGG | 2 cut(s) | 735, 922 |
| Eco57I | CTGAAG | 1 cut(s) | 1035 |
| EcoRI | GAATTC | 1 cut(s) | 991 |
| EcoRII | CCWGG | 2 cut(s) | 376, 1056 |
| EcoT14I | CCWWGG | 2 cut(s) | 735, 922 |
| ErhI | CCWWGG | 2 cut(s) | 735, 922 |
| FaeI | CATG | 1 cut(s) | 566 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 920, 952, 1059, 1091 |
| FaqI | GGGAC | 2 cut(s) | 542, 555 |
| FatI | CATG | 1 cut(s) | 562 |
| FauI | CCCGC | 1 cut(s) | 567 |
| Fnu4HI | GCNGC | 1 cut(s) | 229 |
| FokI | GGATG | 3 cut(s) | 614, 680, 965 |
| Fsp4HI | GCNGC | 1 cut(s) | 229 |
| FspBI | CTAG | 1 cut(s) | 923 |
| GluI | GCNGC | 1 cut(s) | 229 |
| HaeIII | GGCC | 1 cut(s) | 611 |
| HapII | CCGG | 3 cut(s) | 346, 948, 983 |
| HgaI | GACGC | 1 cut(s) | 924 |
| Hin1II | CATG | 1 cut(s) | 566 |
| HincII | GTYRAC | 3 cut(s) | 463, 691, 861 |
| HindII | GTYRAC | 3 cut(s) | 463, 691, 861 |
| HindIII | AAGCTT | 1 cut(s) | 843 |
| HinfI | GANTC | 1 cut(s) | 212 |
| HpaII | CCGG | 3 cut(s) | 346, 948, 983 |
| HphI | GGTGA | 2 cut(s) | 28, 509 |
| Hpy166II | GTNNAC | 5 cut(s) | 47, 463, 691, 784, 861 |
| Hpy188I | TCNGA | 7 cut(s) | 126, 161, 208, 759, 792, 914, 1054 |
| Hpy188III | TCNNGA | 5 cut(s) | 62, 198, 346, 974, 1127 |
| Hpy8I | GTNNAC | 5 cut(s) | 47, 463, 691, 784, 861 |
| HpyCH4III | ACNGT | 9 cut(s) | 28, 179, 222, 385, 410, 732, 817, 944, 960 |
| HpyCH4IV | ACGT | 1 cut(s) | 821 |
| HpyCH4V | TGCA | 7 cut(s) | 189, 260, 354, 430, 767, 784, 1020 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 443, 924, 1067 |
| HpyF3I | CTNAG | 2 cut(s) | 123, 158 |
| HpySE526I | ACGT | 1 cut(s) | 821 |
| Hsp92II | CATG | 1 cut(s) | 566 |
| Kpn2I | TCCGGA | 1 cut(s) | 345 |
| Kzo9I | GATC | 4 cut(s) | 55, 273, 970, 1123 |
| Lsp1109I | GCAGC | 1 cut(s) | 215 |
| LweI | GCATC | 1 cut(s) | 424 |
| MaeI | CTAG | 1 cut(s) | 923 |
| MaeII | ACGT | 1 cut(s) | 821 |
| MaeIII | GTNAC | 3 cut(s) | 589, 817, 1096 |
| MalI | GATC | 4 cut(s) | 57, 275, 972, 1125 |
| MboI | GATC | 4 cut(s) | 55, 273, 970, 1123 |
| MboII | GAAGA | 7 cut(s) | 77, 107, 496, 752, 818, 843, 1041 |
| MfeI | CAATTG | 1 cut(s) | 1101 |
| MflI | RGATCY | 1 cut(s) | 1123 |
| MhlI | GDGCHC | 1 cut(s) | 786 |
| MlsI | TGGCCA | 1 cut(s) | 611 |
| MluCI | AATT | 7 cut(s) | 201, 596, 605, 991, 1025, 1101, 1109 |
| MluNI | TGGCCA | 1 cut(s) | 611 |
| MmeI | TCCRAC | 1 cut(s) | 1038 |
| MnlI | CCTC | 9 cut(s) | 88, 147, 202, 436, 642, 684, 753, 859, 1053 |
| Mox20I | TGGCCA | 1 cut(s) | 611 |
| MroI | TCCGGA | 1 cut(s) | 345 |
| MscI | TGGCCA | 1 cut(s) | 611 |
| MseI | TTAA | 7 cut(s) | 311, 455, 582, 600, 753, 905, 938 |
| MslI | CAYNNNNRTG | 1 cut(s) | 772 |
| Msp20I | TGGCCA | 1 cut(s) | 611 |
| MspI | CCGG | 3 cut(s) | 346, 948, 983 |
| MspR9I | CCNGG | 3 cut(s) | 378, 983, 1058 |
| MunI | CAATTG | 1 cut(s) | 1101 |
| Mva1269I | GAATGC | 1 cut(s) | 506 |
| MvaI | CCWGG | 2 cut(s) | 378, 1058 |
| MvnI | CGCG | 1 cut(s) | 199 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 443, 924, 1067 |
| NciI | CCSGG | 1 cut(s) | 983 |
| NdeII | GATC | 4 cut(s) | 55, 273, 970, 1123 |
| NlaIII | CATG | 1 cut(s) | 566 |
| NlaIV | GGNNCC | 1 cut(s) | 1125 |
| NruI | TCGCGA | 1 cut(s) | 199 |
| PctI | GAATGC | 1 cut(s) | 506 |
| PfeI | GAWTC | 1 cut(s) | 212 |
| PfoI | TCCNGGA | 1 cut(s) | 981 |
| PinAI | ACCGGT | 1 cut(s) | 947 |
| PkrI | GCNGC | 1 cut(s) | 230 |
| PshBI | ATTAAT | 1 cut(s) | 753 |
| Psp6I | CCWGG | 2 cut(s) | 376, 1056 |
| PspGI | CCWGG | 2 cut(s) | 376, 1056 |
| PspN4I | GGNNCC | 1 cut(s) | 1125 |
| PstNI | CAGNNNCTG | 1 cut(s) | 383 |
| PsuI | RGATCY | 1 cut(s) | 1123 |
| RruI | TCGCGA | 1 cut(s) | 199 |
| RsaI | GTAC | 3 cut(s) | 526, 946, 1136 |
| RsaNI | GTAC | 3 cut(s) | 525, 945, 1135 |
| RseI | CAYNNNNRTG | 1 cut(s) | 772 |
| SaqAI | TTAA | 7 cut(s) | 311, 455, 582, 600, 753, 905, 938 |
| SatI | GCNGC | 1 cut(s) | 229 |
| Sau3AI | GATC | 4 cut(s) | 55, 273, 970, 1123 |
| ScrFI | CCNGG | 3 cut(s) | 378, 983, 1058 |
| SduI | GDGCHC | 1 cut(s) | 786 |
| SetI | ASST | 9 cut(s) | 52, 196, 403, 496, 824, 847, 924, 1072, 1143 |
| SfaNI | GCATC | 1 cut(s) | 424 |
| SfcI | CTRYAG | 1 cut(s) | 1079 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 772 |
| SmlI | CTYRAG | 1 cut(s) | 570 |
| SmoI | CTYRAG | 1 cut(s) | 570 |
| Sse9I | AATT | 7 cut(s) | 201, 596, 605, 991, 1025, 1101, 1109 |
| SsiI | CCGC | 2 cut(s) | 560, 587 |
| SspI | AATATT | 1 cut(s) | 1038 |
| SspMI | CTAG | 1 cut(s) | 923 |
| StyD4I | CCNGG | 3 cut(s) | 376, 981, 1056 |
| StyI | CCWWGG | 2 cut(s) | 735, 922 |
| TaaI | ACNGT | 9 cut(s) | 28, 179, 222, 385, 410, 732, 817, 944, 960 |
| TaiI | ACGT | 1 cut(s) | 824 |
| TaqI | TCGA | 2 cut(s) | 54, 368 |
| TasI | AATT | 7 cut(s) | 201, 596, 605, 991, 1025, 1101, 1109 |
| TatI | WGTACW | 1 cut(s) | 1134 |
| TfiI | GAWTC | 1 cut(s) | 212 |
| Tru1I | TTAA | 7 cut(s) | 311, 455, 582, 600, 753, 905, 938 |
| Tru9I | TTAA | 7 cut(s) | 311, 455, 582, 600, 753, 905, 938 |
| TscAI | CASTG | 6 cut(s) | 182, 388, 619, 882, 963, 1011 |
| TseI | GCWGC | 1 cut(s) | 228 |
| TspDTI | ATGAA | 8 cut(s) | 293, 438, 522, 579, 942, 955, 1080, 1122 |
| TspGWI | ACGGA | 2 cut(s) | 512, 1035 |
| TspRI | CASTG | 6 cut(s) | 182, 388, 619, 882, 963, 1011 |
| VneI | GTGCAC | 1 cut(s) | 782 |
| VspI | ATTAAT | 1 cut(s) | 753 |
| XapI | RAATTY | 4 cut(s) | 201, 596, 991, 1025 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 733 |
| XmaJI | CCTAGG | 1 cut(s) | 922 |
| XspI | CTAG | 1 cut(s) | 923 |