DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 786 |
| AclWI | GGATC | 3 cut(s) | 653, 666, 697 |
| AcoI | YGGCCR | 1 cut(s) | 596 |
| AcsI | RAATTY | 2 cut(s) | 325, 449 |
| AcuI | CTGAAG | 1 cut(s) | 788 |
| AcvI | CACGTG | 1 cut(s) | 91 |
| AfaI | GTAC | 3 cut(s) | 222, 576, 585 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 460 |
| AflII | CTTAAG | 1 cut(s) | 224 |
| AgsI | TTSAA | 6 cut(s) | 109, 592, 644, 750, 1016, 1154 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 340, 372 |
| AluBI | AGCT | 6 cut(s) | 371, 824, 910, 1042, 1126, 1169 |
| AluI | AGCT | 6 cut(s) | 371, 824, 910, 1042, 1126, 1169 |
| Alw21I | GWGCWC | 1 cut(s) | 966 |
| Alw26I | GTCTC | 2 cut(s) | 276, 889 |
| AlwI | GGATC | 3 cut(s) | 653, 666, 697 |
| AoxI | GGCC | 2 cut(s) | 481, 596 |
| ApeKI | GCWGC | 4 cut(s) | 470, 492, 907, 1123 |
| ApoI | RAATTY | 2 cut(s) | 325, 449 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 831, 863 |
| AseI | ATTAAT | 1 cut(s) | 794 |
| AspS9I | GGNCC | 1 cut(s) | 199 |
| AsuHPI | GGTGA | 4 cut(s) | 374, 800, 841, 949 |
| AvaII | GGWCC | 1 cut(s) | 199 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 226, 259 |
| BamHI | GGATCC | 1 cut(s) | 658 |
| BbrPI | CACGTG | 1 cut(s) | 91 |
| BbsI | GAAGAC | 1 cut(s) | 995 |
| Bbv12I | GWGCWC | 1 cut(s) | 966 |
| BbvI | GCAGC | 4 cut(s) | 482, 504, 919, 1135 |
| BccI | CCATC | 2 cut(s) | 883, 1039 |
| BceAI | ACGGC | 1 cut(s) | 611 |
| BciVI | GTATCC | 1 cut(s) | 963 |
| BclI | TGATCA | 1 cut(s) | 85 |
| BcoDI | GTCTC | 2 cut(s) | 276, 889 |
| BfaI | CTAG | 2 cut(s) | 372, 1065 |
| BfrI | CTTAAG | 1 cut(s) | 224 |
| BfuI | GTATCC | 1 cut(s) | 963 |
| BglII | AGATCT | 1 cut(s) | 931 |
| BisI | GCNGC | 4 cut(s) | 471, 493, 908, 1124 |
| BlsI | GCNGC | 4 cut(s) | 472, 494, 909, 1125 |
| BmcAI | AGTACT | 2 cut(s) | 222, 576 |
| Bme18I | GGWCC | 1 cut(s) | 199 |
| BmgT120I | GGNCC | 1 cut(s) | 199 |
| BmiI | GGNNCC | 2 cut(s) | 660, 1185 |
| BmsI | GCATC | 4 cut(s) | 130, 927, 1091, 1185 |
| BpiI | GAAGAC | 1 cut(s) | 995 |
| BsaAI | YACGTR | 1 cut(s) | 91 |
| BsaBI | GATNNNNATC | 1 cut(s) | 867 |
| BsaWI | WCCGGW | 2 cut(s) | 708, 1117 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 460 |
| Bse1I | ACTGG | 3 cut(s) | 292, 413, 716 |
| Bse3DI | GCAATG | 1 cut(s) | 539 |
| Bse8I | GATNNNNATC | 1 cut(s) | 867 |
| BseGI | GGATG | 2 cut(s) | 145, 235 |
| BseJI | GATNNNNATC | 1 cut(s) | 867 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 460 |
| BseMI | GCAATG | 1 cut(s) | 539 |
| BseMII | CTCAG | 2 cut(s) | 227, 1179 |
| BseNI | ACTGG | 3 cut(s) | 292, 413, 716 |
| BseRI | GAGGAG | 1 cut(s) | 346 |
| BseXI | GCAGC | 4 cut(s) | 482, 504, 919, 1135 |
| BshFI | GGCC | 2 cut(s) | 483, 598 |
| BsiHKAI | GWGCWC | 1 cut(s) | 966 |
| BsiSI | CCGG | 2 cut(s) | 709, 1118 |
| BslFI | GGGAC | 1 cut(s) | 575 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 460 |
| BsmAI | GTCTC | 2 cut(s) | 276, 889 |
| BsmFI | GGGAC | 1 cut(s) | 575 |
| BsmI | GAATGC | 1 cut(s) | 143 |
| BsnI | GGCC | 2 cut(s) | 483, 598 |
| Bsp1286I | GDGCHC | 1 cut(s) | 966 |
| Bsp143I | GATC | 5 cut(s) | 85, 498, 658, 702, 931 |
| BspACI | CCGC | 1 cut(s) | 786 |
| BspANI | GGCC | 2 cut(s) | 483, 598 |
| BspCNI | CTCAG | 2 cut(s) | 226, 1180 |
| BspLI | GGNNCC | 2 cut(s) | 660, 1185 |
| BspPI | GGATC | 3 cut(s) | 653, 666, 697 |
| BspTI | CTTAAG | 1 cut(s) | 224 |
| BsrDI | GCAATG | 1 cut(s) | 539 |
| BsrI | ACTGG | 3 cut(s) | 292, 413, 716 |
| BssMI | GATC | 5 cut(s) | 85, 498, 658, 702, 931 |
| Bst4CI | ACNGT | 8 cut(s) | 220, 239, 277, 402, 685, 951, 1024, 1111 |
| Bst6I | CTCTTC | 2 cut(s) | 603, 972 |
| BstAFI | CTTAAG | 1 cut(s) | 224 |
| BstBAI | YACGTR | 1 cut(s) | 91 |
| BstC8I | GCNNGC | 2 cut(s) | 420, 1040 |
| BstDEI | CTNAG | 2 cut(s) | 213, 1188 |
| BstF5I | GGATG | 2 cut(s) | 145, 235 |
| BstKTI | GATC | 5 cut(s) | 88, 501, 661, 705, 934 |
| BstMAI | GTCTC | 2 cut(s) | 276, 889 |
| BstMBI | GATC | 5 cut(s) | 85, 498, 658, 702, 931 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 489 |
| BstNSI | RCATGY | 1 cut(s) | 492 |
| BstV1I | GCAGC | 4 cut(s) | 482, 504, 919, 1135 |
| BstV2I | GAAGAC | 1 cut(s) | 995 |
| BstX2I | RGATCY | 2 cut(s) | 658, 931 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 13 |
| BstYI | RGATCY | 2 cut(s) | 658, 931 |
| BsuI | GTATCC | 1 cut(s) | 963 |
| BsuRI | GGCC | 2 cut(s) | 483, 598 |
| BtsCI | GGATG | 2 cut(s) | 145, 235 |
| BtsI | GCAGTG | 1 cut(s) | 693 |
| BtsIMutI | CAGTG | 5 cut(s) | 285, 420, 690, 693, 1107 |
| Cac8I | GCNNGC | 2 cut(s) | 420, 1040 |
| Cfr13I | GGNCC | 1 cut(s) | 199 |
| CseI | GACGC | 1 cut(s) | 102 |
| Csp6I | GTAC | 3 cut(s) | 221, 575, 584 |
| CviAII | CATG | 4 cut(s) | 489, 673, 809, 831 |
| CviQI | GTAC | 3 cut(s) | 221, 575, 584 |
| DdeI | CTNAG | 2 cut(s) | 213, 1188 |
| DpnI | GATC | 5 cut(s) | 87, 500, 660, 704, 933 |
| DpnII | GATC | 5 cut(s) | 85, 498, 658, 702, 931 |
| DraI | TTTAAA | 1 cut(s) | 760 |
| EaeI | YGGCCR | 1 cut(s) | 596 |
| Eam1104I | CTCTTC | 2 cut(s) | 603, 972 |
| EarI | CTCTTC | 2 cut(s) | 603, 972 |
| Eco32I | GATATC | 1 cut(s) | 343 |
| Eco47I | GGWCC | 1 cut(s) | 199 |
| Eco57I | CTGAAG | 1 cut(s) | 788 |
| Eco72I | CACGTG | 1 cut(s) | 91 |
| EcoRV | GATATC | 1 cut(s) | 343 |
| EcoT22I | ATGCAT | 1 cut(s) | 145 |
| FaeI | CATG | 4 cut(s) | 492, 676, 812, 834 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 623, 655, 1061, 1093 |
| FaqI | GGGAC | 1 cut(s) | 575 |
| FatI | CATG | 4 cut(s) | 488, 672, 808, 830 |
| FbaI | TGATCA | 1 cut(s) | 85 |
| Fnu4HI | GCNGC | 4 cut(s) | 471, 493, 908, 1124 |
| FokI | GGATG | 2 cut(s) | 152, 242 |
| Fsp4HI | GCNGC | 4 cut(s) | 471, 493, 908, 1124 |
| FspBI | CTAG | 2 cut(s) | 372, 1065 |
| GluI | GCNGC | 4 cut(s) | 471, 493, 908, 1124 |
| HaeIII | GGCC | 2 cut(s) | 483, 598 |
| HapII | CCGG | 2 cut(s) | 709, 1118 |
| HgaI | GACGC | 1 cut(s) | 102 |
| Hin1II | CATG | 4 cut(s) | 492, 676, 812, 834 |
| HincII | GTYRAC | 2 cut(s) | 117, 444 |
| HindII | GTYRAC | 2 cut(s) | 117, 444 |
| HindIII | AAGCTT | 1 cut(s) | 1167 |
| HinfI | GANTC | 2 cut(s) | 211, 299 |
| HpaII | CCGG | 2 cut(s) | 709, 1118 |
| HphI | GGTGA | 4 cut(s) | 374, 800, 841, 949 |
| Hpy166II | GTNNAC | 4 cut(s) | 117, 235, 444, 940 |
| Hpy188I | TCNGA | 5 cut(s) | 216, 281, 347, 888, 1052 |
| Hpy188III | TCNNGA | 6 cut(s) | 506, 550, 662, 857, 929, 974 |
| Hpy8I | GTNNAC | 4 cut(s) | 117, 235, 444, 940 |
| HpyAV | CCTTC | 2 cut(s) | 14, 551 |
| HpyCH4III | ACNGT | 8 cut(s) | 220, 239, 277, 402, 685, 951, 1024, 1111 |
| HpyCH4IV | ACGT | 1 cut(s) | 90 |
| HpyCH4V | TGCA | 6 cut(s) | 143, 492, 693, 817, 1082, 1176 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 489 |
| HpyF3I | CTNAG | 2 cut(s) | 213, 1188 |
| HpySE526I | ACGT | 1 cut(s) | 90 |
| Hsp92II | CATG | 4 cut(s) | 492, 676, 812, 834 |
| Ksp22I | TGATCA | 1 cut(s) | 85 |
| Kzo9I | GATC | 5 cut(s) | 85, 498, 658, 702, 931 |
| LmnI | GCTCC | 2 cut(s) | 1120, 1183 |
| Lsp1109I | GCAGC | 4 cut(s) | 482, 504, 919, 1135 |
| LweI | GCATC | 4 cut(s) | 130, 927, 1091, 1185 |
| MaeI | CTAG | 2 cut(s) | 372, 1065 |
| MaeII | ACGT | 1 cut(s) | 90 |
| MaeIII | GTNAC | 6 cut(s) | 271, 362, 463, 833, 847, 1111 |
| MalI | GATC | 5 cut(s) | 87, 500, 660, 704, 933 |
| MboI | GATC | 5 cut(s) | 85, 498, 658, 702, 931 |
| MboII | GAAGA | 5 cut(s) | 29, 170, 620, 989, 1000 |
| MfeI | CAATTG | 1 cut(s) | 922 |
| MflI | RGATCY | 2 cut(s) | 658, 931 |
| MhlI | GDGCHC | 1 cut(s) | 966 |
| MluCI | AATT | 9 cut(s) | 43, 293, 325, 348, 449, 644, 791, 795, 922 |
| MlyI | GAGTC | 1 cut(s) | 205 |
| MmeI | TCCRAC | 3 cut(s) | 30, 980, 1154 |
| MnlI | CCTC | 9 cut(s) | 159, 190, 201, 324, 327, 331, 716, 734, 772 |
| Mph1103I | ATGCAT | 1 cut(s) | 145 |
| MseI | TTAA | 8 cut(s) | 171, 225, 396, 437, 647, 759, 794, 984 |
| MslI | CAYNNNNRTG | 1 cut(s) | 887 |
| MspA1I | CMGCKG | 2 cut(s) | 786, 910 |
| MspCI | CTTAAG | 1 cut(s) | 224 |
| MspI | CCGG | 2 cut(s) | 709, 1118 |
| MunI | CAATTG | 1 cut(s) | 922 |
| Mva1269I | GAATGC | 1 cut(s) | 143 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 489 |
| NdeII | GATC | 5 cut(s) | 85, 498, 658, 702, 931 |
| NlaIII | CATG | 4 cut(s) | 492, 676, 812, 834 |
| NlaIV | GGNNCC | 2 cut(s) | 660, 1185 |
| NmuCI | GTSAC | 2 cut(s) | 362, 847 |
| NsiI | ATGCAT | 1 cut(s) | 145 |
| NspI | RCATGY | 1 cut(s) | 492 |
| PctI | GAATGC | 1 cut(s) | 143 |
| PfeI | GAWTC | 1 cut(s) | 299 |
| PkrI | GCNGC | 4 cut(s) | 472, 494, 909, 1125 |
| PleI | GAGTC | 1 cut(s) | 205 |
| PmaCI | CACGTG | 1 cut(s) | 91 |
| PmlI | CACGTG | 1 cut(s) | 91 |
| PpsI | GAGTC | 1 cut(s) | 205 |
| Ppu21I | YACGTR | 1 cut(s) | 91 |
| PshBI | ATTAAT | 1 cut(s) | 794 |
| PspCI | CACGTG | 1 cut(s) | 91 |
| PspN4I | GGNNCC | 2 cut(s) | 660, 1185 |
| PspPI | GGNCC | 1 cut(s) | 199 |
| PsuI | RGATCY | 2 cut(s) | 658, 931 |
| PvuII | CAGCTG | 1 cut(s) | 910 |
| RsaI | GTAC | 3 cut(s) | 222, 576, 585 |
| RsaNI | GTAC | 3 cut(s) | 221, 575, 584 |
| RseI | CAYNNNNRTG | 1 cut(s) | 887 |
| SaqAI | TTAA | 8 cut(s) | 171, 225, 396, 437, 647, 759, 794, 984 |
| SatI | GCNGC | 4 cut(s) | 471, 493, 908, 1124 |
| Sau3AI | GATC | 5 cut(s) | 85, 498, 658, 702, 931 |
| Sau96I | GGNCC | 1 cut(s) | 199 |
| ScaI | AGTACT | 2 cut(s) | 222, 576 |
| SchI | GAGTC | 1 cut(s) | 205 |
| SduI | GDGCHC | 1 cut(s) | 966 |
| SfaNI | GCATC | 4 cut(s) | 130, 927, 1091, 1185 |
| SinI | GGWCC | 1 cut(s) | 199 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 887 |
| SmlI | CTYRAG | 1 cut(s) | 224 |
| SmoI | CTYRAG | 1 cut(s) | 224 |
| Sse9I | AATT | 9 cut(s) | 43, 293, 325, 348, 449, 644, 791, 795, 922 |
| SsiI | CCGC | 1 cut(s) | 786 |
| SspMI | CTAG | 2 cut(s) | 372, 1065 |
| TaaI | ACNGT | 8 cut(s) | 220, 239, 277, 402, 685, 951, 1024, 1111 |
| TaiI | ACGT | 1 cut(s) | 93 |
| TaqI | TCGA | 3 cut(s) | 551, 701, 856 |
| TasI | AATT | 9 cut(s) | 43, 293, 325, 348, 449, 644, 791, 795, 922 |
| TatI | WGTACW | 2 cut(s) | 220, 574 |
| TfiI | GAWTC | 1 cut(s) | 299 |
| Tru1I | TTAA | 8 cut(s) | 171, 225, 396, 437, 647, 759, 794, 984 |
| Tru9I | TTAA | 8 cut(s) | 171, 225, 396, 437, 647, 759, 794, 984 |
| TscAI | CASTG | 5 cut(s) | 292, 420, 690, 700, 1114 |
| TseFI | GTSAC | 2 cut(s) | 362, 847 |
| TseI | GCWGC | 4 cut(s) | 470, 492, 907, 1123 |
| Tsp45I | GTSAC | 2 cut(s) | 362, 847 |
| TspDTI | ATGAA | 6 cut(s) | 156, 170, 629, 689, 1014, 1044 |
| TspRI | CASTG | 5 cut(s) | 292, 420, 690, 700, 1114 |
| Vha464I | CTTAAG | 1 cut(s) | 224 |
| VpaK11BI | GGWCC | 1 cut(s) | 199 |
| VspI | ATTAAT | 1 cut(s) | 794 |
| XapI | RAATTY | 2 cut(s) | 325, 449 |
| XceI | RCATGY | 1 cut(s) | 492 |
| XspI | CTAG | 2 cut(s) | 372, 1065 |
| ZrmI | AGTACT | 2 cut(s) | 222, 576 |
| Zsp2I | ATGCAT | 1 cut(s) | 145 |