DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Rep_fac-A_C | PF08646 | 20 - 131 | 5.9e-09 | Replication factor-A C terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 576 |
| AccI | GTMKAC | 1 cut(s) | 51 |
| AclWI | GGATC | 3 cut(s) | 23, 36, 290 |
| AcsI | RAATTY | 1 cut(s) | 295 |
| AcuI | CTGAAG | 1 cut(s) | 537 |
| AfaI | GTAC | 3 cut(s) | 58, 101, 336 |
| AleI | CACNNNNGTG | 1 cut(s) | 599 |
| AluBI | AGCT | 6 cut(s) | 130, 162, 239, 288, 440, 461 |
| AluI | AGCT | 6 cut(s) | 130, 162, 239, 288, 440, 461 |
| Alw26I | GTCTC | 1 cut(s) | 13 |
| AlwI | GGATC | 3 cut(s) | 23, 36, 290 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 551 |
| ApeKI | GCWGC | 2 cut(s) | 440, 525 |
| ApoI | RAATTY | 1 cut(s) | 295 |
| AspLEI | GCGC | 1 cut(s) | 577 |
| AsuHPI | GGTGA | 1 cut(s) | 400 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 91, 124 |
| BamHI | GGATCC | 1 cut(s) | 28 |
| BbvI | GCAGC | 2 cut(s) | 427, 537 |
| BccI | CCATC | 1 cut(s) | 454 |
| BceAI | ACGGC | 1 cut(s) | 75 |
| BclI | TGATCA | 1 cut(s) | 249 |
| BcoDI | GTCTC | 1 cut(s) | 13 |
| BfmI | CTRYAG | 1 cut(s) | 240 |
| BisI | GCNGC | 2 cut(s) | 441, 526 |
| BlsI | GCNGC | 2 cut(s) | 442, 527 |
| BmiI | GGNNCC | 1 cut(s) | 30 |
| BmsI | GCATC | 2 cut(s) | 136, 562 |
| BpuEI | CTTGAG | 1 cut(s) | 97 |
| BsaJI | CCNNGG | 1 cut(s) | 194 |
| BseDI | CCNNGG | 1 cut(s) | 194 |
| BseGI | GGATG | 2 cut(s) | 151, 567 |
| BseXI | GCAGC | 2 cut(s) | 427, 537 |
| BsmAI | GTCTC | 1 cut(s) | 13 |
| Bsp143I | GATC | 4 cut(s) | 28, 249, 282, 484 |
| Bsp19I | CCATGG | 1 cut(s) | 194 |
| BspHI | TCATGA | 1 cut(s) | 246 |
| BspLI | GGNNCC | 1 cut(s) | 30 |
| BspPI | GGATC | 3 cut(s) | 23, 36, 290 |
| BssECI | CCNNGG | 1 cut(s) | 194 |
| BssMI | GATC | 4 cut(s) | 28, 249, 282, 484 |
| BssT1I | CCWWGG | 1 cut(s) | 194 |
| Bst4CI | ACNGT | 6 cut(s) | 7, 56, 244, 276, 334, 598 |
| Bst6I | CTCTTC | 2 cut(s) | 195, 560 |
| BstDSI | CCRYGG | 1 cut(s) | 194 |
| BstF5I | GGATG | 2 cut(s) | 151, 567 |
| BstHHI | GCGC | 1 cut(s) | 577 |
| BstKTI | GATC | 4 cut(s) | 31, 252, 285, 487 |
| BstMAI | GTCTC | 1 cut(s) | 13 |
| BstMBI | GATC | 4 cut(s) | 28, 249, 282, 484 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 583 |
| BstSFI | CTRYAG | 1 cut(s) | 240 |
| BstV1I | GCAGC | 2 cut(s) | 427, 537 |
| BstX2I | RGATCY | 1 cut(s) | 28 |
| BstYI | RGATCY | 1 cut(s) | 28 |
| BtgI | CCRYGG | 1 cut(s) | 194 |
| BtsCI | GGATG | 2 cut(s) | 151, 567 |
| BtsI | GCAGTG | 1 cut(s) | 150 |
| BtsIMutI | CAGTG | 1 cut(s) | 150 |
| CaiI | CAGNNNCTG | 1 cut(s) | 551 |
| CciI | TCATGA | 1 cut(s) | 246 |
| CfoI | GCGC | 1 cut(s) | 577 |
| Csp6I | GTAC | 3 cut(s) | 57, 100, 335 |
| CviAII | CATG | 6 cut(s) | 82, 173, 195, 247, 253, 326 |
| CviJI | RGCY | 7 cut(s) | 62, 130, 162, 239, 288, 440, 461 |
| CviKI_1 | RGCY | 7 cut(s) | 62, 130, 162, 239, 288, 440, 461 |
| CviQI | GTAC | 3 cut(s) | 57, 100, 335 |
| DpnI | GATC | 4 cut(s) | 30, 251, 284, 486 |
| DpnII | GATC | 4 cut(s) | 28, 249, 282, 484 |
| Eam1104I | CTCTTC | 2 cut(s) | 195, 560 |
| EarI | CTCTTC | 2 cut(s) | 195, 560 |
| Eco130I | CCWWGG | 1 cut(s) | 194 |
| Eco57I | CTGAAG | 1 cut(s) | 537 |
| EcoT14I | CCWWGG | 1 cut(s) | 194 |
| EcoT22I | ATGCAT | 2 cut(s) | 25, 87 |
| ErhI | CCWWGG | 1 cut(s) | 194 |
| FaeI | CATG | 6 cut(s) | 85, 176, 198, 250, 256, 329 |
| FatI | CATG | 6 cut(s) | 81, 172, 194, 246, 252, 325 |
| FbaI | TGATCA | 1 cut(s) | 249 |
| FblI | GTMKAC | 1 cut(s) | 51 |
| Fnu4HI | GCNGC | 2 cut(s) | 441, 526 |
| FokI | GGATG | 2 cut(s) | 158, 574 |
| Fsp4HI | GCNGC | 2 cut(s) | 441, 526 |
| FspI | TGCGCA | 1 cut(s) | 576 |
| GlaI | GCGC | 1 cut(s) | 576 |
| GluI | GCNGC | 2 cut(s) | 441, 526 |
| HhaI | GCGC | 1 cut(s) | 577 |
| Hin1II | CATG | 6 cut(s) | 85, 176, 198, 250, 256, 329 |
| Hin6I | GCGC | 1 cut(s) | 575 |
| HinP1I | GCGC | 1 cut(s) | 575 |
| HincII | GTYRAC | 1 cut(s) | 304 |
| HindII | GTYRAC | 1 cut(s) | 304 |
| HinfI | GANTC | 4 cut(s) | 75, 184, 312, 548 |
| HpaI | GTTAAC | 1 cut(s) | 304 |
| HphI | GGTGA | 1 cut(s) | 400 |
| Hpy166II | GTNNAC | 3 cut(s) | 52, 304, 391 |
| Hpy188I | TCNGA | 3 cut(s) | 381, 547, 553 |
| Hpy188III | TCNNGA | 2 cut(s) | 32, 247 |
| Hpy8I | GTNNAC | 3 cut(s) | 52, 304, 391 |
| HpyAV | CCTTC | 1 cut(s) | 512 |
| HpyCH4III | ACNGT | 6 cut(s) | 7, 56, 244, 276, 334, 598 |
| HpyCH4V | TGCA | 3 cut(s) | 23, 85, 155 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 583 |
| Hsp92II | CATG | 6 cut(s) | 85, 176, 198, 250, 256, 329 |
| HspAI | GCGC | 1 cut(s) | 575 |
| Ksp22I | TGATCA | 1 cut(s) | 249 |
| KspAI | GTTAAC | 1 cut(s) | 304 |
| Kzo9I | GATC | 4 cut(s) | 28, 249, 282, 484 |
| LmnI | GCTCC | 1 cut(s) | 448 |
| LpnPI | CCDG | 5 cut(s) | 45, 351, 395, 495, 639 |
| Lsp1109I | GCAGC | 2 cut(s) | 427, 537 |
| LweI | GCATC | 2 cut(s) | 136, 562 |
| MaeIII | GTNAC | 1 cut(s) | 412 |
| MalI | GATC | 4 cut(s) | 30, 251, 284, 486 |
| MboI | GATC | 4 cut(s) | 28, 249, 282, 484 |
| MboII | GAAGA | 4 cut(s) | 182, 353, 415, 577 |
| MfeI | CAATTG | 1 cut(s) | 404 |
| MflI | RGATCY | 1 cut(s) | 28 |
| MluCI | AATT | 3 cut(s) | 216, 295, 404 |
| MnlI | CCTC | 5 cut(s) | 40, 136, 198, 500, 616 |
| Mph1103I | ATGCAT | 2 cut(s) | 25, 87 |
| MseI | TTAA | 2 cut(s) | 158, 303 |
| MslI | CAYNNNNRTG | 2 cut(s) | 251, 599 |
| MspA1I | CMGCKG | 1 cut(s) | 288 |
| MunI | CAATTG | 1 cut(s) | 404 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 583 |
| NcoI | CCATGG | 1 cut(s) | 194 |
| NdeII | GATC | 4 cut(s) | 28, 249, 282, 484 |
| NlaIII | CATG | 6 cut(s) | 85, 176, 198, 250, 256, 329 |
| NlaIV | GGNNCC | 1 cut(s) | 30 |
| NsbI | TGCGCA | 1 cut(s) | 576 |
| NsiI | ATGCAT | 2 cut(s) | 25, 87 |
| OliI | CACNNNNGTG | 1 cut(s) | 599 |
| PagI | TCATGA | 1 cut(s) | 246 |
| PfeI | GAWTC | 4 cut(s) | 75, 184, 312, 548 |
| PkrI | GCNGC | 2 cut(s) | 442, 527 |
| PspN4I | GGNNCC | 1 cut(s) | 30 |
| PstNI | CAGNNNCTG | 1 cut(s) | 551 |
| PsuI | RGATCY | 1 cut(s) | 28 |
| PvuII | CAGCTG | 1 cut(s) | 288 |
| RsaI | GTAC | 3 cut(s) | 58, 101, 336 |
| RsaNI | GTAC | 3 cut(s) | 57, 100, 335 |
| RseI | CAYNNNNRTG | 2 cut(s) | 251, 599 |
| SaqAI | TTAA | 2 cut(s) | 158, 303 |
| SatI | GCNGC | 2 cut(s) | 441, 526 |
| Sau3AI | GATC | 4 cut(s) | 28, 249, 282, 484 |
| SfaNI | GCATC | 2 cut(s) | 136, 562 |
| SfcI | CTRYAG | 1 cut(s) | 240 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 251, 599 |
| SmlI | CTYRAG | 1 cut(s) | 112 |
| SmoI | CTYRAG | 1 cut(s) | 112 |
| Sse9I | AATT | 3 cut(s) | 216, 295, 404 |
| StyI | CCWWGG | 1 cut(s) | 194 |
| TaaI | ACNGT | 6 cut(s) | 7, 56, 244, 276, 334, 598 |
| TasI | AATT | 3 cut(s) | 216, 295, 404 |
| TfiI | GAWTC | 4 cut(s) | 75, 184, 312, 548 |
| Tru1I | TTAA | 2 cut(s) | 158, 303 |
| Tru9I | TTAA | 2 cut(s) | 158, 303 |
| TscAI | CASTG | 1 cut(s) | 157 |
| TseI | GCWGC | 2 cut(s) | 440, 525 |
| TspDTI | ATGAA | 4 cut(s) | 342, 529, 578, 657 |
| TspGWI | ACGGA | 2 cut(s) | 59, 59 |
| TspRI | CASTG | 1 cut(s) | 157 |
| XapI | RAATTY | 1 cut(s) | 295 |
| XmiI | GTMKAC | 1 cut(s) | 51 |
| Zsp2I | ATGCAT | 2 cut(s) | 25, 87 |