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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 93 |
| AciI | CCGC | 1 cut(s) | 259 |
| AcsI | RAATTY | 2 cut(s) | 529, 653 |
| AcvI | CACGTG | 1 cut(s) | 295 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 93, 664 |
| AflII | CTTAAG | 1 cut(s) | 428 |
| AflIII | ACRYGT | 1 cut(s) | 204 |
| AgsI | TTSAA | 3 cut(s) | 11, 67, 313 |
| AluBI | AGCT | 2 cut(s) | 575, 740 |
| AluI | AGCT | 2 cut(s) | 575, 740 |
| Alw21I | GWGCWC | 1 cut(s) | 624 |
| Alw26I | GTCTC | 1 cut(s) | 91 |
| AoxI | GGCC | 2 cut(s) | 130, 685 |
| ApeKI | GCWGC | 1 cut(s) | 674 |
| ApoI | RAATTY | 2 cut(s) | 529, 653 |
| AspS9I | GGNCC | 1 cut(s) | 403 |
| AsuHPI | GGTGA | 1 cut(s) | 578 |
| AvaII | GGWCC | 1 cut(s) | 403 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 430, 463 |
| BbrPI | CACGTG | 1 cut(s) | 295 |
| Bbv12I | GWGCWC | 1 cut(s) | 624 |
| BbvI | GCAGC | 1 cut(s) | 686 |
| BclI | TGATCA | 1 cut(s) | 289 |
| BcoDI | GTCTC | 1 cut(s) | 91 |
| BfaI | CTAG | 1 cut(s) | 576 |
| BfrI | CTTAAG | 1 cut(s) | 428 |
| BisI | GCNGC | 1 cut(s) | 675 |
| BlsI | GCNGC | 1 cut(s) | 676 |
| Bme18I | GGWCC | 1 cut(s) | 403 |
| BmgT120I | GGNCC | 1 cut(s) | 403 |
| BmsI | GCATC | 3 cut(s) | 92, 334, 705 |
| BsaAI | YACGTR | 1 cut(s) | 295 |
| BsaI | GGTCTC | 1 cut(s) | 91 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 93, 664 |
| Bse1I | ACTGG | 1 cut(s) | 617 |
| Bse3DI | GCAATG | 1 cut(s) | 29 |
| BseGI | GGATG | 3 cut(s) | 83, 349, 439 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 93, 664 |
| BseMI | GCAATG | 1 cut(s) | 29 |
| BseMII | CTCAG | 3 cut(s) | 431, 472, 732 |
| BseNI | ACTGG | 1 cut(s) | 617 |
| BseRI | GAGGAG | 1 cut(s) | 550 |
| BseXI | GCAGC | 1 cut(s) | 686 |
| BshFI | GGCC | 2 cut(s) | 132, 687 |
| BsiHKAI | GWGCWC | 1 cut(s) | 624 |
| BslFI | GGGAC | 1 cut(s) | 174 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 93, 664 |
| BsmAI | GTCTC | 1 cut(s) | 91 |
| BsmFI | GGGAC | 1 cut(s) | 174 |
| BsmI | GAATGC | 1 cut(s) | 347 |
| BsnI | GGCC | 2 cut(s) | 132, 687 |
| Bso31I | GGTCTC | 1 cut(s) | 91 |
| Bsp1286I | GDGCHC | 1 cut(s) | 624 |
| Bsp143I | GATC | 1 cut(s) | 289 |
| BspACI | CCGC | 1 cut(s) | 259 |
| BspANI | GGCC | 2 cut(s) | 132, 687 |
| BspCNI | CTCAG | 3 cut(s) | 430, 471, 733 |
| BspTI | CTTAAG | 1 cut(s) | 428 |
| BspTNI | GGTCTC | 1 cut(s) | 91 |
| BsrDI | GCAATG | 1 cut(s) | 29 |
| BsrI | ACTGG | 1 cut(s) | 617 |
| BssMI | GATC | 1 cut(s) | 289 |
| Bst4CI | ACNGT | 6 cut(s) | 51, 128, 306, 443, 481, 606 |
| Bst6I | CTCTTC | 1 cut(s) | 150 |
| BstAFI | CTTAAG | 1 cut(s) | 428 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 31 |
| BstBAI | YACGTR | 1 cut(s) | 295 |
| BstC8I | GCNNGC | 2 cut(s) | 27, 624 |
| BstDEI | CTNAG | 3 cut(s) | 417, 458, 741 |
| BstF5I | GGATG | 3 cut(s) | 83, 349, 439 |
| BstKTI | GATC | 1 cut(s) | 292 |
| BstMAI | GTCTC | 1 cut(s) | 91 |
| BstMBI | GATC | 1 cut(s) | 289 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 31, 619, 693 |
| BstNSI | RCATGY | 4 cut(s) | 29, 167, 208, 696 |
| BstV1I | GCAGC | 1 cut(s) | 686 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 217 |
| BsuRI | GGCC | 2 cut(s) | 132, 687 |
| BtsCI | GGATG | 3 cut(s) | 83, 349, 439 |
| BtsIMutI | CAGTG | 2 cut(s) | 489, 624 |
| Cac8I | GCNNGC | 2 cut(s) | 27, 624 |
| Cfr13I | GGNCC | 1 cut(s) | 403 |
| CviAII | CATG | 5 cut(s) | 26, 164, 173, 205, 693 |
| CviJI | RGCY | 5 cut(s) | 132, 334, 575, 687, 740 |
| CviKI_1 | RGCY | 5 cut(s) | 132, 334, 575, 687, 740 |
| DdeI | CTNAG | 3 cut(s) | 417, 458, 741 |
| DpnI | GATC | 1 cut(s) | 291 |
| DpnII | GATC | 1 cut(s) | 289 |
| Eam1104I | CTCTTC | 1 cut(s) | 150 |
| EarI | CTCTTC | 1 cut(s) | 150 |
| Eco31I | GGTCTC | 1 cut(s) | 91 |
| Eco32I | GATATC | 1 cut(s) | 547 |
| Eco47I | GGWCC | 1 cut(s) | 403 |
| Eco72I | CACGTG | 1 cut(s) | 295 |
| EcoRV | GATATC | 1 cut(s) | 547 |
| EcoT22I | ATGCAT | 3 cut(s) | 31, 349, 698 |
| FaeI | CATG | 5 cut(s) | 29, 167, 176, 208, 696 |
| FaqI | GGGAC | 1 cut(s) | 174 |
| FatI | CATG | 5 cut(s) | 25, 163, 172, 204, 692 |
| FbaI | TGATCA | 1 cut(s) | 289 |
| Fnu4HI | GCNGC | 1 cut(s) | 675 |
| FokI | GGATG | 3 cut(s) | 70, 356, 446 |
| Fsp4HI | GCNGC | 1 cut(s) | 675 |
| FspBI | CTAG | 1 cut(s) | 576 |
| GluI | GCNGC | 1 cut(s) | 675 |
| HaeIII | GGCC | 2 cut(s) | 132, 687 |
| Hin1II | CATG | 5 cut(s) | 29, 167, 176, 208, 696 |
| HincII | GTYRAC | 2 cut(s) | 321, 648 |
| HindII | GTYRAC | 2 cut(s) | 321, 648 |
| HinfI | GANTC | 3 cut(s) | 317, 415, 503 |
| HphI | GGTGA | 1 cut(s) | 578 |
| Hpy166II | GTNNAC | 3 cut(s) | 321, 439, 648 |
| Hpy188I | TCNGA | 5 cut(s) | 57, 74, 420, 461, 551 |
| Hpy188III | TCNNGA | 2 cut(s) | 87, 710 |
| Hpy8I | GTNNAC | 3 cut(s) | 321, 439, 648 |
| Hpy99I | CGWCG | 1 cut(s) | 155 |
| HpyAV | CCTTC | 3 cut(s) | 218, 392, 568 |
| HpyCH4III | ACNGT | 6 cut(s) | 51, 128, 306, 443, 481, 606 |
| HpyCH4IV | ACGT | 1 cut(s) | 294 |
| HpyCH4V | TGCA | 4 cut(s) | 29, 83, 347, 696 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 31, 619, 693 |
| HpyF3I | CTNAG | 3 cut(s) | 417, 458, 741 |
| HpySE526I | ACGT | 1 cut(s) | 294 |
| Hsp92II | CATG | 5 cut(s) | 29, 167, 176, 208, 696 |
| Ksp22I | TGATCA | 1 cut(s) | 289 |
| Kzo9I | GATC | 1 cut(s) | 289 |
| Lsp1109I | GCAGC | 1 cut(s) | 686 |
| LweI | GCATC | 3 cut(s) | 92, 334, 705 |
| MaeI | CTAG | 1 cut(s) | 576 |
| MaeII | ACGT | 1 cut(s) | 294 |
| MaeIII | GTNAC | 4 cut(s) | 38, 475, 566, 667 |
| MalI | GATC | 1 cut(s) | 291 |
| MboI | GATC | 1 cut(s) | 289 |
| MboII | GAAGA | 2 cut(s) | 167, 233 |
| MhlI | GDGCHC | 1 cut(s) | 624 |
| MluCI | AATT | 6 cut(s) | 180, 247, 497, 529, 552, 653 |
| MlyI | GAGTC | 2 cut(s) | 326, 409 |
| MmeI | TCCRAC | 1 cut(s) | 234 |
| MnlI | CCTC | 9 cut(s) | 143, 151, 178, 363, 394, 405, 528, 531, 535 |
| Mph1103I | ATGCAT | 3 cut(s) | 31, 349, 698 |
| MseI | TTAA | 6 cut(s) | 146, 179, 375, 429, 600, 641 |
| MspCI | CTTAAG | 1 cut(s) | 428 |
| Mva1269I | GAATGC | 1 cut(s) | 347 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 31, 619, 693 |
| NdeII | GATC | 1 cut(s) | 289 |
| NlaIII | CATG | 5 cut(s) | 29, 167, 176, 208, 696 |
| NmuCI | GTSAC | 2 cut(s) | 38, 566 |
| NsiI | ATGCAT | 3 cut(s) | 31, 349, 698 |
| NspI | RCATGY | 4 cut(s) | 29, 167, 208, 696 |
| PaeI | GCATGC | 1 cut(s) | 29 |
| PciI | ACATGT | 1 cut(s) | 204 |
| PctI | GAATGC | 1 cut(s) | 347 |
| PfeI | GAWTC | 1 cut(s) | 503 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 93 |
| PkrI | GCNGC | 1 cut(s) | 676 |
| PleI | GAGTC | 2 cut(s) | 325, 409 |
| PmaCI | CACGTG | 1 cut(s) | 295 |
| PmlI | CACGTG | 1 cut(s) | 295 |
| PpsI | GAGTC | 2 cut(s) | 325, 409 |
| Ppu21I | YACGTR | 1 cut(s) | 295 |
| PscI | ACATGT | 1 cut(s) | 204 |
| PspCI | CACGTG | 1 cut(s) | 295 |
| PspPI | GGNCC | 1 cut(s) | 403 |
| SaqAI | TTAA | 6 cut(s) | 146, 179, 375, 429, 600, 641 |
| SatI | GCNGC | 1 cut(s) | 675 |
| Sau3AI | GATC | 1 cut(s) | 289 |
| Sau96I | GGNCC | 1 cut(s) | 403 |
| SchI | GAGTC | 2 cut(s) | 326, 409 |
| SduI | GDGCHC | 1 cut(s) | 624 |
| SetI | ASST | 7 cut(s) | 234, 268, 297, 560, 577, 647, 742 |
| SfaNI | GCATC | 3 cut(s) | 92, 334, 705 |
| SinI | GGWCC | 1 cut(s) | 403 |
| SmlI | CTYRAG | 1 cut(s) | 428 |
| SmoI | CTYRAG | 1 cut(s) | 428 |
| SphI | GCATGC | 1 cut(s) | 29 |
| Sse9I | AATT | 6 cut(s) | 180, 247, 497, 529, 552, 653 |
| SsiI | CCGC | 1 cut(s) | 259 |
| SspMI | CTAG | 1 cut(s) | 576 |
| TaaI | ACNGT | 6 cut(s) | 51, 128, 306, 443, 481, 606 |
| TaiI | ACGT | 1 cut(s) | 297 |
| TaqI | TCGA | 1 cut(s) | 150 |
| TaqII | GACCGA | 1 cut(s) | 115 |
| TasI | AATT | 6 cut(s) | 180, 247, 497, 529, 552, 653 |
| TfiI | GAWTC | 1 cut(s) | 503 |
| Tru1I | TTAA | 6 cut(s) | 146, 179, 375, 429, 600, 641 |
| Tru9I | TTAA | 6 cut(s) | 146, 179, 375, 429, 600, 641 |
| TscAI | CASTG | 2 cut(s) | 496, 624 |
| TseFI | GTSAC | 2 cut(s) | 38, 566 |
| TseI | GCWGC | 1 cut(s) | 674 |
| Tsp45I | GTSAC | 2 cut(s) | 38, 566 |
| TspDTI | ATGAA | 4 cut(s) | 161, 360, 374, 744 |
| TspRI | CASTG | 2 cut(s) | 496, 624 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 93 |
| Vha464I | CTTAAG | 1 cut(s) | 428 |
| VpaK11BI | GGWCC | 1 cut(s) | 403 |
| XapI | RAATTY | 2 cut(s) | 529, 653 |
| XceI | RCATGY | 4 cut(s) | 29, 167, 208, 696 |
| XspI | CTAG | 1 cut(s) | 576 |
| Zsp2I | ATGCAT | 3 cut(s) | 31, 349, 698 |