DNA recombination
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Myb_DNA-binding | PF00249 | 16 - 63 | 9.9e-15 | Myb-like DNA-binding domain |
| Myb_DNA-bind_6 | PF13921 | 19 - 77 | 2.2e-09 | Myb-like DNA-binding domain |
| Myb_DNA-binding | PF00249 | 69 - 113 | 5.5e-17 | Myb-like DNA-binding domain |
| Myb_DNA-bind_6 | PF13921 | 73 - 122 | 3.8e-09 | Myb-like DNA-binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 77 |
| AatII | GACGTC | 1 cut(s) | 450 |
| AciI | CCGC | 1 cut(s) | 429 |
| AcsI | RAATTY | 2 cut(s) | 331, 644 |
| AcuI | CTGAAG | 3 cut(s) | 62, 164, 558 |
| AcyI | GRCGYC | 1 cut(s) | 447 |
| AfaI | GTAC | 2 cut(s) | 16, 559 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 345 |
| AflIII | ACRYGT | 1 cut(s) | 375 |
| AgsI | TTSAA | 3 cut(s) | 181, 479, 619 |
| AjiI | CACGTC | 1 cut(s) | 376 |
| AjnI | CCWGG | 3 cut(s) | 53, 128, 295 |
| AluBI | AGCT | 3 cut(s) | 235, 352, 536 |
| AluI | AGCT | 3 cut(s) | 235, 352, 536 |
| Alw21I | GWGCWC | 1 cut(s) | 237 |
| Alw26I | GTCTC | 1 cut(s) | 160 |
| Ama87I | CYCGRG | 1 cut(s) | 662 |
| AoxI | GGCC | 1 cut(s) | 191 |
| ApeKI | GCWGC | 2 cut(s) | 431, 533 |
| ApoI | RAATTY | 2 cut(s) | 331, 644 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 75, 107, 456, 488 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 602 |
| AspS9I | GGNCC | 1 cut(s) | 273 |
| AsuHPI | GGTGA | 1 cut(s) | 575 |
| AvaI | CYCGRG | 1 cut(s) | 662 |
| AvaII | GGWCC | 1 cut(s) | 273 |
| BanII | GRGCYC | 1 cut(s) | 237 |
| BbsI | GAAGAC | 2 cut(s) | 75, 486 |
| Bbv12I | GWGCWC | 1 cut(s) | 237 |
| BbvI | GCAGC | 2 cut(s) | 418, 545 |
| BccI | CCATC | 2 cut(s) | 29, 264 |
| BceAI | ACGGC | 1 cut(s) | 404 |
| BciT130I | CCWGG | 3 cut(s) | 55, 130, 297 |
| BcoDI | GTCTC | 1 cut(s) | 160 |
| BisI | GCNGC | 3 cut(s) | 429, 432, 534 |
| BlsI | GCNGC | 3 cut(s) | 430, 433, 535 |
| BmcAI | AGTACT | 1 cut(s) | 16 |
| Bme1390I | CCNGG | 3 cut(s) | 55, 130, 297 |
| Bme18I | GGWCC | 1 cut(s) | 273 |
| BmeT110I | CYCGRG | 1 cut(s) | 662 |
| BmgBI | CACGTC | 1 cut(s) | 376 |
| BmgT120I | GGNCC | 1 cut(s) | 273 |
| BmiI | GGNNCC | 2 cut(s) | 52, 248 |
| BmrFI | CCNGG | 3 cut(s) | 55, 130, 297 |
| BmsI | GCATC | 2 cut(s) | 499, 511 |
| BpiI | GAAGAC | 2 cut(s) | 75, 486 |
| BsaBI | GATNNNNATC | 2 cut(s) | 492, 573 |
| BsaHI | GRCGYC | 1 cut(s) | 447 |
| BsaJI | CCNNGG | 2 cut(s) | 129, 296 |
| BsaXI | ACNNNNNCTCC | 5 cut(s) | 28, 392, 422, 513, 543 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 345 |
| Bse1I | ACTGG | 2 cut(s) | 332, 565 |
| Bse8I | GATNNNNATC | 2 cut(s) | 492, 573 |
| BseBI | CCWGG | 3 cut(s) | 55, 130, 297 |
| BseDI | CCNNGG | 2 cut(s) | 129, 296 |
| BseGI | GGATG | 3 cut(s) | 410, 589, 657 |
| BseJI | GATNNNNATC | 2 cut(s) | 492, 573 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 345 |
| BseMII | CTCAG | 3 cut(s) | 179, 184, 569 |
| BseNI | ACTGG | 2 cut(s) | 332, 565 |
| BseRI | GAGGAG | 1 cut(s) | 404 |
| BseXI | GCAGC | 2 cut(s) | 418, 545 |
| BshFI | GGCC | 1 cut(s) | 193 |
| BsiHKAI | GWGCWC | 1 cut(s) | 237 |
| BsiHKCI | CYCGRG | 1 cut(s) | 662 |
| BsiSI | CCGG | 1 cut(s) | 285 |
| BslFI | GGGAC | 1 cut(s) | 434 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 345 |
| BsmAI | GTCTC | 1 cut(s) | 160 |
| BsmFI | GGGAC | 1 cut(s) | 434 |
| BsnI | GGCC | 1 cut(s) | 193 |
| BsoBI | CYCGRG | 1 cut(s) | 662 |
| Bsp1286I | GDGCHC | 1 cut(s) | 237 |
| Bsp143I | GATC | 2 cut(s) | 393, 487 |
| BspACI | CCGC | 1 cut(s) | 429 |
| BspANI | GGCC | 1 cut(s) | 193 |
| BspCNI | CTCAG | 3 cut(s) | 180, 183, 570 |
| BspHI | TCATGA | 1 cut(s) | 505 |
| BspLI | GGNNCC | 2 cut(s) | 52, 248 |
| BspQI | GCTCTTC | 1 cut(s) | 225 |
| BsrI | ACTGG | 2 cut(s) | 332, 565 |
| BssECI | CCNNGG | 2 cut(s) | 129, 296 |
| BssMI | GATC | 2 cut(s) | 393, 487 |
| BssNI | GRCGYC | 1 cut(s) | 447 |
| Bst2UI | CCWGG | 3 cut(s) | 55, 130, 297 |
| Bst4CI | ACNGT | 1 cut(s) | 104 |
| Bst6I | CTCTTC | 3 cut(s) | 140, 152, 225 |
| BstACI | GRCGYC | 1 cut(s) | 447 |
| BstDEI | CTNAG | 4 cut(s) | 170, 188, 370, 578 |
| BstEII | GGTNACC | 1 cut(s) | 291 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 343 |
| BstF5I | GGATG | 3 cut(s) | 410, 589, 657 |
| BstKTI | GATC | 2 cut(s) | 396, 490 |
| BstMAI | GTCTC | 1 cut(s) | 160 |
| BstMBI | GATC | 2 cut(s) | 393, 487 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 59, 425, 539 |
| BstNI | CCWGG | 3 cut(s) | 55, 130, 297 |
| BstPI | GGTNACC | 1 cut(s) | 291 |
| BstSCI | CCNGG | 3 cut(s) | 53, 128, 295 |
| BstV1I | GCAGC | 2 cut(s) | 418, 545 |
| BstV2I | GAAGAC | 2 cut(s) | 75, 486 |
| BsuRI | GGCC | 1 cut(s) | 193 |
| BtrI | CACGTC | 1 cut(s) | 376 |
| BtsCI | GGATG | 3 cut(s) | 410, 589, 657 |
| BtsIMutI | CAGTG | 1 cut(s) | 435 |
| CciI | TCATGA | 1 cut(s) | 505 |
| Cfr13I | GGNCC | 1 cut(s) | 273 |
| Csp6I | GTAC | 2 cut(s) | 15, 558 |
| CviAII | CATG | 1 cut(s) | 506 |
| CviJI | RGCY | 8 cut(s) | 53, 86, 193, 235, 247, 284, 352, 536 |
| CviKI_1 | RGCY | 8 cut(s) | 53, 86, 193, 235, 247, 284, 352, 536 |
| CviQI | GTAC | 2 cut(s) | 15, 558 |
| DdeI | CTNAG | 4 cut(s) | 170, 188, 370, 578 |
| DpnI | GATC | 2 cut(s) | 395, 489 |
| DpnII | GATC | 2 cut(s) | 393, 487 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 77 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 77 |
| Eam1104I | CTCTTC | 3 cut(s) | 140, 152, 225 |
| EarI | CTCTTC | 3 cut(s) | 140, 152, 225 |
| Ecl136II | GAGCTC | 1 cut(s) | 235 |
| Eco147I | AGGCCT | 1 cut(s) | 193 |
| Eco24I | GRGCYC | 1 cut(s) | 237 |
| Eco32I | GATATC | 1 cut(s) | 199 |
| Eco47I | GGWCC | 1 cut(s) | 273 |
| Eco53kI | GAGCTC | 1 cut(s) | 235 |
| Eco57I | CTGAAG | 3 cut(s) | 62, 164, 558 |
| Eco88I | CYCGRG | 1 cut(s) | 662 |
| Eco91I | GGTNACC | 1 cut(s) | 291 |
| EcoICRI | GAGCTC | 1 cut(s) | 235 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 343 |
| EcoO65I | GGTNACC | 1 cut(s) | 291 |
| EcoRI | GAATTC | 2 cut(s) | 331, 644 |
| EcoRII | CCWGG | 3 cut(s) | 53, 128, 295 |
| EcoRV | GATATC | 1 cut(s) | 199 |
| EcoT38I | GRGCYC | 1 cut(s) | 237 |
| FaeI | CATG | 1 cut(s) | 509 |
| FaiI | YATR | 3 cut(s) | 24, 507, 608 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 33, 389, 421 |
| FaqI | GGGAC | 1 cut(s) | 434 |
| FatI | CATG | 1 cut(s) | 505 |
| Fnu4HI | GCNGC | 3 cut(s) | 429, 432, 534 |
| FokI | GGATG | 3 cut(s) | 397, 596, 644 |
| FriOI | GRGCYC | 1 cut(s) | 237 |
| Fsp4HI | GCNGC | 3 cut(s) | 429, 432, 534 |
| GluI | GCNGC | 3 cut(s) | 429, 432, 534 |
| HaeIII | GGCC | 1 cut(s) | 193 |
| HapII | CCGG | 1 cut(s) | 285 |
| Hin1I | GRCGYC | 1 cut(s) | 447 |
| Hin1II | CATG | 1 cut(s) | 509 |
| HinfI | GANTC | 1 cut(s) | 168 |
| HpaII | CCGG | 1 cut(s) | 285 |
| HphI | GGTGA | 1 cut(s) | 575 |
| Hpy188I | TCNGA | 5 cut(s) | 110, 144, 189, 579, 643 |
| Hpy188III | TCNNGA | 1 cut(s) | 506 |
| Hpy99I | CGWCG | 1 cut(s) | 638 |
| HpyAV | CCTTC | 1 cut(s) | 282 |
| HpyCH4III | ACNGT | 1 cut(s) | 104 |
| HpyCH4IV | ACGT | 6 cut(s) | 90, 375, 447, 454, 516, 636 |
| HpyCH4V | TGCA | 2 cut(s) | 62, 533 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 59, 425, 539 |
| HpyF3I | CTNAG | 4 cut(s) | 170, 188, 370, 578 |
| HpySE526I | ACGT | 6 cut(s) | 90, 375, 447, 454, 516, 636 |
| Hsp92I | GRCGYC | 1 cut(s) | 447 |
| Hsp92II | CATG | 1 cut(s) | 509 |
| Kzo9I | GATC | 2 cut(s) | 393, 487 |
| LguI | GCTCTTC | 1 cut(s) | 225 |
| LmnI | GCTCC | 2 cut(s) | 50, 252 |
| Lsp1109I | GCAGC | 2 cut(s) | 418, 545 |
| LweI | GCATC | 2 cut(s) | 499, 511 |
| MaeII | ACGT | 6 cut(s) | 90, 375, 447, 454, 516, 636 |
| MaeIII | GTNAC | 1 cut(s) | 291 |
| MalI | GATC | 2 cut(s) | 395, 489 |
| MboI | GATC | 2 cut(s) | 393, 487 |
| MboII | GAAGA | 9 cut(s) | 55, 80, 157, 169, 233, 239, 242, 491, 497 |
| MhlI | GDGCHC | 1 cut(s) | 237 |
| MluCI | AATT | 3 cut(s) | 331, 601, 644 |
| MlyI | GAGTC | 1 cut(s) | 162 |
| MmeI | TCCRAC | 3 cut(s) | 88, 499, 505 |
| MnlI | CCTC | 7 cut(s) | 183, 339, 382, 394, 424, 436, 573 |
| MroXI | GAANNNNTTC | 1 cut(s) | 602 |
| MseI | TTAA | 1 cut(s) | 341 |
| MslI | CAYNNNNRTG | 1 cut(s) | 507 |
| MspA1I | CMGCKG | 2 cut(s) | 431, 536 |
| MspI | CCGG | 1 cut(s) | 285 |
| MspR9I | CCNGG | 3 cut(s) | 55, 130, 297 |
| MvaI | CCWGG | 3 cut(s) | 55, 130, 297 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 59, 425, 539 |
| NdeII | GATC | 2 cut(s) | 393, 487 |
| NlaIII | CATG | 1 cut(s) | 509 |
| NlaIV | GGNNCC | 2 cut(s) | 52, 248 |
| PagI | TCATGA | 1 cut(s) | 505 |
| PceI | AGGCCT | 1 cut(s) | 193 |
| PciSI | GCTCTTC | 1 cut(s) | 225 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 660 |
| PdmI | GAANNNNTTC | 1 cut(s) | 602 |
| PkrI | GCNGC | 3 cut(s) | 430, 433, 535 |
| PleI | GAGTC | 1 cut(s) | 162 |
| PpsI | GAGTC | 1 cut(s) | 162 |
| Psp124BI | GAGCTC | 1 cut(s) | 237 |
| Psp6I | CCWGG | 3 cut(s) | 53, 128, 295 |
| PspEI | GGTNACC | 1 cut(s) | 291 |
| PspGI | CCWGG | 3 cut(s) | 53, 128, 295 |
| PspN4I | GGNNCC | 2 cut(s) | 52, 248 |
| PspPI | GGNCC | 1 cut(s) | 273 |
| PvuII | CAGCTG | 1 cut(s) | 536 |
| RsaI | GTAC | 2 cut(s) | 16, 559 |
| RsaNI | GTAC | 2 cut(s) | 15, 558 |
| RseI | CAYNNNNRTG | 1 cut(s) | 507 |
| SacI | GAGCTC | 1 cut(s) | 237 |
| SapI | GCTCTTC | 1 cut(s) | 225 |
| SaqAI | TTAA | 1 cut(s) | 341 |
| SatI | GCNGC | 3 cut(s) | 429, 432, 534 |
| Sau3AI | GATC | 2 cut(s) | 393, 487 |
| Sau96I | GGNCC | 1 cut(s) | 273 |
| ScaI | AGTACT | 1 cut(s) | 16 |
| SchI | GAGTC | 1 cut(s) | 162 |
| ScrFI | CCNGG | 3 cut(s) | 55, 130, 297 |
| SduI | GDGCHC | 1 cut(s) | 237 |
| SfaNI | GCATC | 2 cut(s) | 499, 511 |
| SinI | GGWCC | 1 cut(s) | 273 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 507 |
| Sse9I | AATT | 3 cut(s) | 331, 601, 644 |
| SseBI | AGGCCT | 1 cut(s) | 193 |
| SsiI | CCGC | 1 cut(s) | 429 |
| SstI | GAGCTC | 1 cut(s) | 237 |
| StuI | AGGCCT | 1 cut(s) | 193 |
| StyD4I | CCNGG | 3 cut(s) | 53, 128, 295 |
| TaaI | ACNGT | 1 cut(s) | 104 |
| TaiI | ACGT | 6 cut(s) | 93, 378, 450, 457, 519, 639 |
| TaqI | TCGA | 1 cut(s) | 633 |
| TasI | AATT | 3 cut(s) | 331, 601, 644 |
| TatI | WGTACW | 1 cut(s) | 14 |
| TauI | GCSGC | 1 cut(s) | 431 |
| Tru1I | TTAA | 1 cut(s) | 341 |
| Tru9I | TTAA | 1 cut(s) | 341 |
| TscAI | CASTG | 1 cut(s) | 442 |
| TseI | GCWGC | 2 cut(s) | 431, 533 |
| TspDTI | ATGAA | 4 cut(s) | 240, 327, 585, 595 |
| TspRI | CASTG | 1 cut(s) | 442 |
| VpaK11BI | GGWCC | 1 cut(s) | 273 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 343 |
| XapI | RAATTY | 2 cut(s) | 331, 644 |
| XmnI | GAANNNNTTC | 1 cut(s) | 602 |
| ZraI | GACGTC | 1 cut(s) | 448 |
| ZrmI | AGTACT | 1 cut(s) | 16 |