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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 50 |
| AcsI | RAATTY | 2 cut(s) | 113, 173 |
| AfaI | GTAC | 1 cut(s) | 280 |
| AgsI | TTSAA | 2 cut(s) | 61, 173 |
| Alw21I | GWGCWC | 2 cut(s) | 193, 258 |
| AoxI | GGCC | 1 cut(s) | 50 |
| ApeKI | GCWGC | 4 cut(s) | 231, 336, 339, 384 |
| ApoI | RAATTY | 2 cut(s) | 113, 173 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 275, 307 |
| BbsI | GAAGAC | 2 cut(s) | 206, 298 |
| Bbv12I | GWGCWC | 2 cut(s) | 193, 258 |
| BbvI | GCAGC | 3 cut(s) | 218, 348, 351 |
| BceAI | ACGGC | 1 cut(s) | 65 |
| BciVI | GTATCC | 1 cut(s) | 124 |
| BclI | TGATCA | 1 cut(s) | 361 |
| BfuI | GTATCC | 1 cut(s) | 124 |
| BisI | GCNGC | 4 cut(s) | 232, 337, 340, 385 |
| BlsI | GCNGC | 4 cut(s) | 233, 338, 341, 386 |
| BpiI | GAAGAC | 2 cut(s) | 206, 298 |
| BpmI | CTGGAG | 1 cut(s) | 308 |
| BpuEI | CTTGAG | 1 cut(s) | 340 |
| BsaJI | CCNNGG | 1 cut(s) | 47 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 124, 154, 180, 210 |
| Bse118I | RCCGGY | 1 cut(s) | 52 |
| Bse1I | ACTGG | 1 cut(s) | 291 |
| BseDI | CCNNGG | 1 cut(s) | 47 |
| BseMII | CTCAG | 1 cut(s) | 218 |
| BseNI | ACTGG | 1 cut(s) | 291 |
| BseX3I | CGGCCG | 1 cut(s) | 50 |
| BseXI | GCAGC | 3 cut(s) | 218, 348, 351 |
| Bsh1285I | CGRYCG | 1 cut(s) | 53 |
| BshFI | GGCC | 1 cut(s) | 52 |
| BsiEI | CGRYCG | 1 cut(s) | 53 |
| BsiHKAI | GWGCWC | 2 cut(s) | 193, 258 |
| BsiSI | CCGG | 1 cut(s) | 53 |
| BsnI | GGCC | 1 cut(s) | 52 |
| Bsp1286I | GDGCHC | 2 cut(s) | 193, 258 |
| Bsp143I | GATC | 2 cut(s) | 178, 361 |
| BspANI | GGCC | 1 cut(s) | 52 |
| BspCNI | CTCAG | 1 cut(s) | 217 |
| BsrFI | RCCGGY | 1 cut(s) | 52 |
| BsrI | ACTGG | 1 cut(s) | 291 |
| BssAI | RCCGGY | 1 cut(s) | 52 |
| BssECI | CCNNGG | 1 cut(s) | 47 |
| BssMI | GATC | 2 cut(s) | 178, 361 |
| Bst4CI | ACNGT | 2 cut(s) | 153, 278 |
| BstDEI | CTNAG | 1 cut(s) | 204 |
| BstDSI | CCRYGG | 1 cut(s) | 47 |
| BstKTI | GATC | 2 cut(s) | 181, 364 |
| BstMBI | GATC | 2 cut(s) | 178, 361 |
| BstMCI | CGRYCG | 1 cut(s) | 53 |
| BstNSI | RCATGY | 1 cut(s) | 358 |
| BstV1I | GCAGC | 3 cut(s) | 218, 348, 351 |
| BstV2I | GAAGAC | 2 cut(s) | 206, 298 |
| BstZI | CGGCCG | 1 cut(s) | 50 |
| BsuI | GTATCC | 1 cut(s) | 124 |
| BsuRI | GGCC | 1 cut(s) | 52 |
| BtgI | CCRYGG | 1 cut(s) | 47 |
| Cfr10I | RCCGGY | 1 cut(s) | 52 |
| Csp6I | GTAC | 1 cut(s) | 279 |
| CviAII | CATG | 3 cut(s) | 164, 355, 359 |
| CviJI | RGCY | 1 cut(s) | 52 |
| CviKI_1 | RGCY | 1 cut(s) | 52 |
| CviQI | GTAC | 1 cut(s) | 279 |
| DdeI | CTNAG | 1 cut(s) | 204 |
| DpnI | GATC | 2 cut(s) | 180, 363 |
| DpnII | GATC | 2 cut(s) | 178, 361 |
| EaeI | YGGCCR | 1 cut(s) | 50 |
| EagI | CGGCCG | 1 cut(s) | 50 |
| EclXI | CGGCCG | 1 cut(s) | 50 |
| Eco52I | CGGCCG | 1 cut(s) | 50 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoT22I | ATGCAT | 1 cut(s) | 360 |
| FaeI | CATG | 3 cut(s) | 167, 358, 362 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 119, 151 |
| FatI | CATG | 3 cut(s) | 163, 354, 358 |
| FbaI | TGATCA | 1 cut(s) | 361 |
| Fnu4HI | GCNGC | 4 cut(s) | 232, 337, 340, 385 |
| Fsp4HI | GCNGC | 4 cut(s) | 232, 337, 340, 385 |
| GluI | GCNGC | 4 cut(s) | 232, 337, 340, 385 |
| GsuI | CTGGAG | 1 cut(s) | 308 |
| HaeIII | GGCC | 1 cut(s) | 52 |
| HapII | CCGG | 1 cut(s) | 53 |
| Hin1II | CATG | 3 cut(s) | 167, 358, 362 |
| HinfI | GANTC | 4 cut(s) | 104, 202, 290, 328 |
| HpaII | CCGG | 1 cut(s) | 53 |
| Hpy188I | TCNGA | 1 cut(s) | 188 |
| Hpy188III | TCNNGA | 2 cut(s) | 170, 206 |
| HpyAV | CCTTC | 2 cut(s) | 145, 265 |
| HpyCH4III | ACNGT | 2 cut(s) | 153, 278 |
| HpyCH4V | TGCA | 2 cut(s) | 234, 358 |
| HpyF3I | CTNAG | 1 cut(s) | 204 |
| Hsp92II | CATG | 3 cut(s) | 167, 358, 362 |
| Ksp22I | TGATCA | 1 cut(s) | 361 |
| Kzo9I | GATC | 2 cut(s) | 178, 361 |
| LmnI | GCTCC | 1 cut(s) | 188 |
| LpnPI | CCDG | 5 cut(s) | 66, 104, 191, 264, 272 |
| Lsp1109I | GCAGC | 3 cut(s) | 218, 348, 351 |
| MaeIII | GTNAC | 1 cut(s) | 329 |
| MalI | GATC | 2 cut(s) | 180, 363 |
| MboI | GATC | 2 cut(s) | 178, 361 |
| MboII | GAAGA | 2 cut(s) | 211, 298 |
| MhlI | GDGCHC | 2 cut(s) | 193, 258 |
| MluCI | AATT | 3 cut(s) | 113, 173, 377 |
| MlyI | GAGTC | 3 cut(s) | 196, 299, 337 |
| MnlI | CCTC | 2 cut(s) | 76, 150 |
| Mph1103I | ATGCAT | 1 cut(s) | 360 |
| MseI | TTAA | 1 cut(s) | 264 |
| MspI | CCGG | 1 cut(s) | 53 |
| NdeII | GATC | 2 cut(s) | 178, 361 |
| NlaIII | CATG | 3 cut(s) | 167, 358, 362 |
| NmuCI | GTSAC | 1 cut(s) | 329 |
| NsiI | ATGCAT | 1 cut(s) | 360 |
| NspI | RCATGY | 1 cut(s) | 358 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PkrI | GCNGC | 4 cut(s) | 233, 338, 341, 386 |
| PleI | GAGTC | 3 cut(s) | 196, 298, 336 |
| PpsI | GAGTC | 3 cut(s) | 196, 298, 336 |
| RsaI | GTAC | 1 cut(s) | 280 |
| RsaNI | GTAC | 1 cut(s) | 279 |
| SaqAI | TTAA | 1 cut(s) | 264 |
| SatI | GCNGC | 4 cut(s) | 232, 337, 340, 385 |
| Sau3AI | GATC | 2 cut(s) | 178, 361 |
| SchI | GAGTC | 3 cut(s) | 196, 299, 337 |
| SduI | GDGCHC | 2 cut(s) | 193, 258 |
| SetI | ASST | 2 cut(s) | 123, 137 |
| SmlI | CTYRAG | 1 cut(s) | 319 |
| SmoI | CTYRAG | 1 cut(s) | 319 |
| Sse9I | AATT | 3 cut(s) | 113, 173, 377 |
| TaaI | ACNGT | 2 cut(s) | 153, 278 |
| TaqI | TCGA | 2 cut(s) | 99, 177 |
| TasI | AATT | 3 cut(s) | 113, 173, 377 |
| TatI | WGTACW | 1 cut(s) | 278 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| Tru1I | TTAA | 1 cut(s) | 264 |
| Tru9I | TTAA | 1 cut(s) | 264 |
| TseFI | GTSAC | 1 cut(s) | 329 |
| TseI | GCWGC | 4 cut(s) | 231, 336, 339, 384 |
| Tsp45I | GTSAC | 1 cut(s) | 329 |
| TspDTI | ATGAA | 3 cut(s) | 117, 152, 298 |
| TspGWI | ACGGA | 1 cut(s) | 83 |
| XapI | RAATTY | 2 cut(s) | 113, 173 |
| XceI | RCATGY | 1 cut(s) | 358 |
| Zsp2I | ATGCAT | 1 cut(s) | 360 |