DNA recombination
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 420 |
| AccII | CGCG | 1 cut(s) | 70 |
| AciI | CCGC | 1 cut(s) | 335 |
| AclWI | GGATC | 2 cut(s) | 683, 833 |
| AcsI | RAATTY | 4 cut(s) | 308, 368, 725, 863 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 1 cut(s) | 408 |
| AflII | CTTAAG | 1 cut(s) | 514 |
| AjiI | CACGTC | 1 cut(s) | 124 |
| AjnI | CCWGG | 2 cut(s) | 736, 770 |
| AluBI | AGCT | 3 cut(s) | 59, 386, 621 |
| AluI | AGCT | 3 cut(s) | 59, 386, 621 |
| Alw26I | GTCTC | 2 cut(s) | 73, 735 |
| AlwI | GGATC | 2 cut(s) | 683, 833 |
| Ama87I | CYCGRG | 1 cut(s) | 730 |
| AoxI | GGCC | 1 cut(s) | 734 |
| ApeKI | GCWGC | 1 cut(s) | 386 |
| ApoI | RAATTY | 4 cut(s) | 308, 368, 725, 863 |
| AseI | ATTAAT | 1 cut(s) | 14 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 579 |
| AspLEI | GCGC | 1 cut(s) | 70 |
| AspS9I | GGNCC | 1 cut(s) | 43 |
| AsuHPI | GGTGA | 3 cut(s) | 560, 581, 760 |
| AvaI | CYCGRG | 1 cut(s) | 730 |
| AvaII | GGWCC | 1 cut(s) | 43 |
| BbsI | GAAGAC | 1 cut(s) | 330 |
| BbvI | GCAGC | 1 cut(s) | 373 |
| BccI | CCATC | 2 cut(s) | 104, 664 |
| BceAI | ACGGC | 1 cut(s) | 439 |
| BciT130I | CCWGG | 2 cut(s) | 738, 772 |
| BclI | TGATCA | 3 cut(s) | 133, 271, 681 |
| BcoDI | GTCTC | 2 cut(s) | 73, 735 |
| BfaI | CTAG | 3 cut(s) | 60, 641, 836 |
| BfrI | CTTAAG | 1 cut(s) | 514 |
| BglII | AGATCT | 2 cut(s) | 285, 526 |
| BisI | GCNGC | 1 cut(s) | 387 |
| BlsI | GCNGC | 1 cut(s) | 388 |
| Bme1390I | CCNGG | 2 cut(s) | 738, 772 |
| Bme18I | GGWCC | 1 cut(s) | 43 |
| BmeT110I | CYCGRG | 1 cut(s) | 730 |
| BmgBI | CACGTC | 1 cut(s) | 124 |
| BmgT120I | GGNCC | 1 cut(s) | 43 |
| BmiI | GGNNCC | 1 cut(s) | 45 |
| BmrFI | CCNGG | 2 cut(s) | 738, 772 |
| BmsI | GCATC | 1 cut(s) | 136 |
| BpiI | GAAGAC | 1 cut(s) | 330 |
| BsaBI | GATNNNNATC | 1 cut(s) | 693 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaI | GGTCTC | 1 cut(s) | 73 |
| BsaJI | CCNNGG | 2 cut(s) | 344, 489 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 732, 762 |
| Bse1I | ACTGG | 1 cut(s) | 384 |
| Bse8I | GATNNNNATC | 1 cut(s) | 693 |
| BseBI | CCWGG | 2 cut(s) | 738, 772 |
| BseDI | CCNNGG | 2 cut(s) | 344, 489 |
| BseGI | GGATG | 1 cut(s) | 767 |
| BseJI | GATNNNNATC | 1 cut(s) | 693 |
| BseNI | ACTGG | 1 cut(s) | 384 |
| BseXI | GCAGC | 1 cut(s) | 373 |
| BsgI | GTGCAG | 1 cut(s) | 485 |
| Bsh1236I | CGCG | 1 cut(s) | 70 |
| BshFI | GGCC | 1 cut(s) | 736 |
| BsiHKCI | CYCGRG | 1 cut(s) | 730 |
| BslFI | GGGAC | 1 cut(s) | 29 |
| BsmAI | GTCTC | 2 cut(s) | 73, 735 |
| BsmFI | GGGAC | 1 cut(s) | 29 |
| BsmI | GAATGC | 1 cut(s) | 349 |
| BsnI | GGCC | 1 cut(s) | 736 |
| Bso31I | GGTCTC | 1 cut(s) | 73 |
| BsoBI | CYCGRG | 1 cut(s) | 730 |
| Bsp143I | GATC | 9 cut(s) | 133, 271, 285, 526, 568, 627, 681, 688, 838 |
| BspACI | CCGC | 1 cut(s) | 335 |
| BspANI | GGCC | 1 cut(s) | 736 |
| BspFNI | CGCG | 1 cut(s) | 70 |
| BspLI | GGNNCC | 1 cut(s) | 45 |
| BspPI | GGATC | 2 cut(s) | 683, 833 |
| BspTI | CTTAAG | 1 cut(s) | 514 |
| BspTNI | GGTCTC | 1 cut(s) | 73 |
| BsrI | ACTGG | 1 cut(s) | 384 |
| BssECI | CCNNGG | 2 cut(s) | 344, 489 |
| BssMI | GATC | 9 cut(s) | 133, 271, 285, 526, 568, 627, 681, 688, 838 |
| BssNAI | GTATAC | 1 cut(s) | 421 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssT1I | CCWWGG | 2 cut(s) | 344, 489 |
| Bst1107I | GTATAC | 1 cut(s) | 421 |
| Bst2UI | CCWGG | 2 cut(s) | 738, 772 |
| Bst4CI | ACNGT | 2 cut(s) | 439, 600 |
| Bst6I | CTCTTC | 1 cut(s) | 514 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAFI | CTTAAG | 1 cut(s) | 514 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 155, 781 |
| BstC8I | GCNNGC | 1 cut(s) | 242 |
| BstDEI | CTNAG | 1 cut(s) | 127 |
| BstF5I | GGATG | 1 cut(s) | 767 |
| BstFNI | CGCG | 1 cut(s) | 70 |
| BstHHI | GCGC | 1 cut(s) | 70 |
| BstKTI | GATC | 9 cut(s) | 136, 274, 288, 529, 571, 630, 684, 691, 841 |
| BstMAI | GTCTC | 2 cut(s) | 73, 735 |
| BstMBI | GATC | 9 cut(s) | 133, 271, 285, 526, 568, 627, 681, 688, 838 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 65, 155, 781 |
| BstNI | CCWGG | 2 cut(s) | 738, 772 |
| BstNSI | RCATGY | 1 cut(s) | 678 |
| BstSCI | CCNGG | 2 cut(s) | 736, 770 |
| BstUI | CGCG | 1 cut(s) | 70 |
| BstV1I | GCAGC | 1 cut(s) | 373 |
| BstV2I | GAAGAC | 1 cut(s) | 330 |
| BstX2I | RGATCY | 4 cut(s) | 285, 526, 688, 838 |
| BstYI | RGATCY | 4 cut(s) | 285, 526, 688, 838 |
| BstZ17I | GTATAC | 1 cut(s) | 421 |
| BsuRI | GGCC | 1 cut(s) | 736 |
| BtgZI | GCGATG | 1 cut(s) | 159 |
| BtrI | CACGTC | 1 cut(s) | 124 |
| BtsCI | GGATG | 1 cut(s) | 767 |
| Cac8I | GCNNGC | 1 cut(s) | 242 |
| CfoI | GCGC | 1 cut(s) | 70 |
| Cfr13I | GGNCC | 1 cut(s) | 43 |
| Csp6I | GTAC | 1 cut(s) | 407 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 585, 620 |
| CviAII | CATG | 4 cut(s) | 20, 155, 675, 679 |
| CviJI | RGCY | 6 cut(s) | 59, 386, 426, 494, 621, 736 |
| CviKI_1 | RGCY | 6 cut(s) | 59, 386, 426, 494, 621, 736 |
| CviQI | GTAC | 1 cut(s) | 407 |
| DdeI | CTNAG | 1 cut(s) | 127 |
| DpnI | GATC | 9 cut(s) | 135, 273, 287, 528, 570, 629, 683, 690, 840 |
| DpnII | GATC | 9 cut(s) | 133, 271, 285, 526, 568, 627, 681, 688, 838 |
| Eam1104I | CTCTTC | 1 cut(s) | 514 |
| EarI | CTCTTC | 1 cut(s) | 514 |
| Eco130I | CCWWGG | 2 cut(s) | 344, 489 |
| Eco31I | GGTCTC | 1 cut(s) | 73 |
| Eco47I | GGWCC | 1 cut(s) | 43 |
| Eco88I | CYCGRG | 1 cut(s) | 730 |
| EcoRI | GAATTC | 1 cut(s) | 725 |
| EcoRII | CCWGG | 2 cut(s) | 736, 770 |
| EcoT14I | CCWWGG | 2 cut(s) | 344, 489 |
| EcoT22I | ATGCAT | 1 cut(s) | 680 |
| ErhI | CCWWGG | 2 cut(s) | 344, 489 |
| FaeI | CATG | 4 cut(s) | 23, 158, 678, 682 |
| FaqI | GGGAC | 1 cut(s) | 29 |
| FatI | CATG | 4 cut(s) | 19, 154, 674, 678 |
| FauI | CCCGC | 1 cut(s) | 342 |
| FbaI | TGATCA | 3 cut(s) | 133, 271, 681 |
| FblI | GTMKAC | 1 cut(s) | 420 |
| Fnu4HI | GCNGC | 1 cut(s) | 387 |
| FokI | GGATG | 1 cut(s) | 754 |
| Fsp4HI | GCNGC | 1 cut(s) | 387 |
| FspBI | CTAG | 3 cut(s) | 60, 641, 836 |
| GlaI | GCGC | 1 cut(s) | 69 |
| GluI | GCNGC | 1 cut(s) | 387 |
| HaeIII | GGCC | 1 cut(s) | 736 |
| HhaI | GCGC | 1 cut(s) | 70 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 4 cut(s) | 23, 158, 678, 682 |
| Hin6I | GCGC | 1 cut(s) | 68 |
| HinP1I | GCGC | 1 cut(s) | 68 |
| HincII | GTYRAC | 1 cut(s) | 850 |
| HindII | GTYRAC | 1 cut(s) | 850 |
| HindIII | AAGCTT | 1 cut(s) | 619 |
| HinfI | GANTC | 3 cut(s) | 340, 485, 586 |
| HphI | GGTGA | 3 cut(s) | 560, 581, 760 |
| Hpy166II | GTNNAC | 3 cut(s) | 407, 421, 850 |
| Hpy188I | TCNGA | 4 cut(s) | 456, 531, 585, 823 |
| Hpy188III | TCNNGA | 5 cut(s) | 365, 446, 572, 730, 842 |
| Hpy8I | GTNNAC | 3 cut(s) | 407, 421, 850 |
| HpyAV | CCTTC | 1 cut(s) | 200 |
| HpyCH4III | ACNGT | 2 cut(s) | 439, 600 |
| HpyCH4IV | ACGT | 2 cut(s) | 123, 417 |
| HpyCH4V | TGCA | 6 cut(s) | 149, 158, 466, 557, 678, 784 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 65, 155, 781 |
| HpyF3I | CTNAG | 1 cut(s) | 127 |
| HpySE526I | ACGT | 2 cut(s) | 123, 417 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 4 cut(s) | 23, 158, 678, 682 |
| HspAI | GCGC | 1 cut(s) | 68 |
| Ksp22I | TGATCA | 3 cut(s) | 133, 271, 681 |
| Kzo9I | GATC | 9 cut(s) | 133, 271, 285, 526, 568, 627, 681, 688, 838 |
| Lsp1109I | GCAGC | 1 cut(s) | 373 |
| LweI | GCATC | 1 cut(s) | 136 |
| MaeI | CTAG | 3 cut(s) | 60, 641, 836 |
| MaeII | ACGT | 2 cut(s) | 123, 417 |
| MaeIII | GTNAC | 3 cut(s) | 98, 613, 668 |
| MalI | GATC | 9 cut(s) | 135, 273, 287, 528, 570, 629, 683, 690, 840 |
| MboI | GATC | 9 cut(s) | 133, 271, 285, 526, 568, 627, 681, 688, 838 |
| MflI | RGATCY | 4 cut(s) | 285, 526, 688, 838 |
| MnlI | CCTC | 3 cut(s) | 192, 603, 726 |
| Mph1103I | ATGCAT | 1 cut(s) | 680 |
| MroXI | GAANNNNTTC | 1 cut(s) | 579 |
| MseI | TTAA | 5 cut(s) | 14, 93, 515, 623, 912 |
| MslI | CAYNNNNRTG | 1 cut(s) | 677 |
| MspCI | CTTAAG | 1 cut(s) | 514 |
| MspR9I | CCNGG | 2 cut(s) | 738, 772 |
| Mva1269I | GAATGC | 1 cut(s) | 349 |
| MvaI | CCWGG | 2 cut(s) | 738, 772 |
| MvnI | CGCG | 1 cut(s) | 70 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 65, 155, 781 |
| NdeII | GATC | 9 cut(s) | 133, 271, 285, 526, 568, 627, 681, 688, 838 |
| NlaIII | CATG | 4 cut(s) | 23, 158, 678, 682 |
| NlaIV | GGNNCC | 1 cut(s) | 45 |
| NmuCI | GTSAC | 2 cut(s) | 98, 668 |
| NsiI | ATGCAT | 1 cut(s) | 680 |
| NspI | RCATGY | 1 cut(s) | 678 |
| PaeR7I | CTCGAG | 1 cut(s) | 730 |
| PctI | GAATGC | 1 cut(s) | 349 |
| PdmI | GAANNNNTTC | 1 cut(s) | 579 |
| PfeI | GAWTC | 3 cut(s) | 340, 485, 586 |
| PkrI | GCNGC | 1 cut(s) | 388 |
| PshBI | ATTAAT | 1 cut(s) | 14 |
| Psp6I | CCWGG | 2 cut(s) | 736, 770 |
| PspGI | CCWGG | 2 cut(s) | 736, 770 |
| PspN4I | GGNNCC | 1 cut(s) | 45 |
| PspPI | GGNCC | 1 cut(s) | 43 |
| PsuI | RGATCY | 4 cut(s) | 285, 526, 688, 838 |
| RsaI | GTAC | 1 cut(s) | 408 |
| RsaNI | GTAC | 1 cut(s) | 407 |
| RseI | CAYNNNNRTG | 1 cut(s) | 677 |
| SaqAI | TTAA | 5 cut(s) | 14, 93, 515, 623, 912 |
| SatI | GCNGC | 1 cut(s) | 387 |
| Sau3AI | GATC | 9 cut(s) | 133, 271, 285, 526, 568, 627, 681, 688, 838 |
| Sau96I | GGNCC | 1 cut(s) | 43 |
| ScrFI | CCNGG | 2 cut(s) | 738, 772 |
| SfaNI | GCATC | 1 cut(s) | 136 |
| Sfr274I | CTCGAG | 1 cut(s) | 730 |
| SinI | GGWCC | 1 cut(s) | 43 |
| SlaI | CTCGAG | 1 cut(s) | 730 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 677 |
| SmlI | CTYRAG | 2 cut(s) | 514, 730 |
| SmoI | CTYRAG | 2 cut(s) | 514, 730 |
| SsiI | CCGC | 1 cut(s) | 335 |
| SspMI | CTAG | 3 cut(s) | 60, 641, 836 |
| StyD4I | CCNGG | 2 cut(s) | 736, 770 |
| StyI | CCWWGG | 2 cut(s) | 344, 489 |
| TaaI | ACNGT | 2 cut(s) | 439, 600 |
| TaiI | ACGT | 2 cut(s) | 126, 420 |
| TaqI | TCGA | 3 cut(s) | 254, 298, 731 |
| TaqII | GACCGA | 1 cut(s) | 97 |
| TatI | WGTACW | 1 cut(s) | 406 |
| TfiI | GAWTC | 3 cut(s) | 340, 485, 586 |
| Tru1I | TTAA | 5 cut(s) | 14, 93, 515, 623, 912 |
| Tru9I | TTAA | 5 cut(s) | 14, 93, 515, 623, 912 |
| TseFI | GTSAC | 2 cut(s) | 98, 668 |
| TseI | GCWGC | 1 cut(s) | 386 |
| Tsp45I | GTSAC | 2 cut(s) | 98, 668 |
| TspDTI | ATGAA | 6 cut(s) | 143, 342, 362, 756, 859, 889 |
| Vha464I | CTTAAG | 1 cut(s) | 514 |
| VpaK11BI | GGWCC | 1 cut(s) | 43 |
| VspI | ATTAAT | 1 cut(s) | 14 |
| XapI | RAATTY | 4 cut(s) | 308, 368, 725, 863 |
| XceI | RCATGY | 1 cut(s) | 678 |
| XhoI | CTCGAG | 1 cut(s) | 730 |
| XmiI | GTMKAC | 1 cut(s) | 420 |
| XmnI | GAANNNNTTC | 1 cut(s) | 579 |
| XspI | CTAG | 3 cut(s) | 60, 641, 836 |
| Zsp2I | ATGCAT | 1 cut(s) | 680 |