DNA RNA polymerases superfamily protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 290, 521 |
| AcuI | CTGAAG | 1 cut(s) | 281 |
| AfaI | GTAC | 1 cut(s) | 131 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 170, 476 |
| AgsI | TTSAA | 5 cut(s) | 89, 247, 355, 385, 400 |
| AluBI | AGCT | 1 cut(s) | 515 |
| AluI | AGCT | 1 cut(s) | 515 |
| Alw26I | GTCTC | 2 cut(s) | 199, 376 |
| Ama87I | CYCGRG | 1 cut(s) | 439 |
| AoxI | GGCC | 2 cut(s) | 402, 494 |
| AsuC2I | CCSGG | 1 cut(s) | 462 |
| AsuHPI | GGTGA | 3 cut(s) | 152, 275, 300 |
| AvaI | CYCGRG | 1 cut(s) | 439 |
| BauI | CACGAG | 1 cut(s) | 15 |
| BccI | CCATC | 1 cut(s) | 176 |
| BcnI | CCSGG | 1 cut(s) | 462 |
| BcoDI | GTCTC | 2 cut(s) | 199, 376 |
| BisI | GCNGC | 1 cut(s) | 291 |
| BlsI | GCNGC | 1 cut(s) | 292 |
| Bme1390I | CCNGG | 1 cut(s) | 462 |
| BmeT110I | CYCGRG | 1 cut(s) | 439 |
| BmrFI | CCNGG | 1 cut(s) | 462 |
| BmsI | GCATC | 3 cut(s) | 37, 463, 491 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 493, 525 |
| BpuEI | CTTGAG | 2 cut(s) | 495, 512 |
| BpuMI | CCSGG | 1 cut(s) | 462 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 499, 529 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 170, 476 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 170, 476 |
| BseMII | CTCAG | 1 cut(s) | 180 |
| BshFI | GGCC | 2 cut(s) | 404, 496 |
| BsiHKCI | CYCGRG | 1 cut(s) | 439 |
| BsiSI | CCGG | 1 cut(s) | 462 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 170, 476 |
| BsmAI | GTCTC | 2 cut(s) | 199, 376 |
| BsmI | GAATGC | 1 cut(s) | 428 |
| BsnI | GGCC | 2 cut(s) | 404, 496 |
| BsoBI | CYCGRG | 1 cut(s) | 439 |
| Bsp143I | GATC | 2 cut(s) | 94, 265 |
| BspACI | CCGC | 2 cut(s) | 290, 521 |
| BspANI | GGCC | 2 cut(s) | 404, 496 |
| BspCNI | CTCAG | 1 cut(s) | 181 |
| BspQI | GCTCTTC | 1 cut(s) | 300 |
| BssMI | GATC | 2 cut(s) | 94, 265 |
| BssSI | CACGAG | 1 cut(s) | 15 |
| Bst2BI | CACGAG | 1 cut(s) | 15 |
| Bst4CI | ACNGT | 2 cut(s) | 243, 430 |
| Bst6I | CTCTTC | 2 cut(s) | 85, 300 |
| BstC8I | GCNNGC | 1 cut(s) | 36 |
| BstDEI | CTNAG | 2 cut(s) | 189, 498 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 474 |
| BstKTI | GATC | 2 cut(s) | 97, 268 |
| BstMAI | GTCTC | 2 cut(s) | 199, 376 |
| BstMBI | GATC | 2 cut(s) | 94, 265 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 44 |
| BstNSI | RCATGY | 1 cut(s) | 38 |
| BstSCI | CCNGG | 1 cut(s) | 460 |
| BsuRI | GGCC | 2 cut(s) | 404, 496 |
| BtsIMutI | CAGTG | 1 cut(s) | 426 |
| Cac8I | GCNNGC | 1 cut(s) | 36 |
| Csp6I | GTAC | 1 cut(s) | 130 |
| CviAII | CATG | 3 cut(s) | 35, 165, 286 |
| CviJI | RGCY | 4 cut(s) | 293, 404, 496, 515 |
| CviKI_1 | RGCY | 4 cut(s) | 293, 404, 496, 515 |
| CviQI | GTAC | 1 cut(s) | 130 |
| DdeI | CTNAG | 2 cut(s) | 189, 498 |
| DpnI | GATC | 2 cut(s) | 96, 267 |
| DpnII | GATC | 2 cut(s) | 94, 265 |
| Eam1104I | CTCTTC | 2 cut(s) | 85, 300 |
| EarI | CTCTTC | 2 cut(s) | 85, 300 |
| Eco147I | AGGCCT | 2 cut(s) | 404, 496 |
| Eco32I | GATATC | 1 cut(s) | 72 |
| Eco57I | CTGAAG | 1 cut(s) | 281 |
| Eco88I | CYCGRG | 1 cut(s) | 439 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 474 |
| EcoRV | GATATC | 1 cut(s) | 72 |
| FaeI | CATG | 3 cut(s) | 38, 168, 289 |
| FaiI | YATR | 4 cut(s) | 36, 166, 287, 537 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 239, 271 |
| FatI | CATG | 3 cut(s) | 34, 164, 285 |
| Fnu4HI | GCNGC | 1 cut(s) | 291 |
| Fsp4HI | GCNGC | 1 cut(s) | 291 |
| GluI | GCNGC | 1 cut(s) | 291 |
| HaeIII | GGCC | 2 cut(s) | 404, 496 |
| HapII | CCGG | 1 cut(s) | 462 |
| Hin1II | CATG | 3 cut(s) | 38, 168, 289 |
| HinfI | GANTC | 3 cut(s) | 437, 448, 508 |
| HpaII | CCGG | 1 cut(s) | 462 |
| HphI | GGTGA | 3 cut(s) | 152, 275, 300 |
| Hpy188I | TCNGA | 5 cut(s) | 69, 106, 190, 223, 394 |
| Hpy188III | TCNNGA | 1 cut(s) | 413 |
| HpyAV | CCTTC | 2 cut(s) | 394, 462 |
| HpyCH4III | ACNGT | 2 cut(s) | 243, 430 |
| HpyCH4V | TGCA | 4 cut(s) | 28, 34, 426, 476 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 44 |
| HpyF3I | CTNAG | 2 cut(s) | 189, 498 |
| Hsp92II | CATG | 3 cut(s) | 38, 168, 289 |
| Kzo9I | GATC | 2 cut(s) | 94, 265 |
| LguI | GCTCTTC | 1 cut(s) | 300 |
| LmnI | GCTCC | 3 cut(s) | 16, 479, 520 |
| LpnPI | CCDG | 6 cut(s) | 83, 140, 462, 475, 483, 503 |
| LweI | GCATC | 3 cut(s) | 37, 463, 491 |
| MaeIII | GTNAC | 3 cut(s) | 306, 343, 538 |
| MalI | GATC | 2 cut(s) | 96, 267 |
| MboI | GATC | 2 cut(s) | 94, 265 |
| MboII | GAAGA | 5 cut(s) | 72, 188, 191, 259, 287 |
| MfeI | CAATTG | 1 cut(s) | 228 |
| MluCI | AATT | 3 cut(s) | 108, 217, 228 |
| MlyI | GAGTC | 3 cut(s) | 431, 457, 502 |
| MmeI | TCCRAC | 1 cut(s) | 417 |
| MnlI | CCTC | 7 cut(s) | 24, 131, 163, 184, 435, 486, 536 |
| MseI | TTAA | 1 cut(s) | 338 |
| MslI | CAYNNNNRTG | 1 cut(s) | 33 |
| MspI | CCGG | 1 cut(s) | 462 |
| MspR9I | CCNGG | 1 cut(s) | 462 |
| MunI | CAATTG | 1 cut(s) | 228 |
| Mva1269I | GAATGC | 1 cut(s) | 428 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 44 |
| NciI | CCSGG | 1 cut(s) | 462 |
| NdeII | GATC | 2 cut(s) | 94, 265 |
| NlaIII | CATG | 3 cut(s) | 38, 168, 289 |
| NmuCI | GTSAC | 2 cut(s) | 306, 538 |
| NspI | RCATGY | 1 cut(s) | 38 |
| PaeI | GCATGC | 1 cut(s) | 38 |
| PaeR7I | CTCGAG | 1 cut(s) | 439 |
| PceI | AGGCCT | 2 cut(s) | 404, 496 |
| PciSI | GCTCTTC | 1 cut(s) | 300 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 80 |
| PctI | GAATGC | 1 cut(s) | 428 |
| PkrI | GCNGC | 1 cut(s) | 292 |
| PleI | GAGTC | 3 cut(s) | 431, 456, 502 |
| PpsI | GAGTC | 3 cut(s) | 431, 456, 502 |
| PspXI | VCTCGAGB | 1 cut(s) | 439 |
| RsaI | GTAC | 1 cut(s) | 131 |
| RsaNI | GTAC | 1 cut(s) | 130 |
| RseI | CAYNNNNRTG | 1 cut(s) | 33 |
| SapI | GCTCTTC | 1 cut(s) | 300 |
| SaqAI | TTAA | 1 cut(s) | 338 |
| SatI | GCNGC | 1 cut(s) | 291 |
| Sau3AI | GATC | 2 cut(s) | 94, 265 |
| SchI | GAGTC | 3 cut(s) | 431, 457, 502 |
| ScrFI | CCNGG | 1 cut(s) | 462 |
| SetI | ASST | 5 cut(s) | 116, 142, 472, 517, 528 |
| SfaNI | GCATC | 3 cut(s) | 37, 463, 491 |
| Sfr274I | CTCGAG | 1 cut(s) | 439 |
| SlaI | CTCGAG | 1 cut(s) | 439 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 33 |
| SmlI | CTYRAG | 3 cut(s) | 439, 510, 527 |
| SmoI | CTYRAG | 3 cut(s) | 439, 510, 527 |
| SphI | GCATGC | 1 cut(s) | 38 |
| Sse9I | AATT | 3 cut(s) | 108, 217, 228 |
| SseBI | AGGCCT | 2 cut(s) | 404, 496 |
| SsiI | CCGC | 2 cut(s) | 290, 521 |
| SspI | AATATT | 1 cut(s) | 364 |
| StuI | AGGCCT | 2 cut(s) | 404, 496 |
| StyD4I | CCNGG | 1 cut(s) | 460 |
| TaaI | ACNGT | 2 cut(s) | 243, 430 |
| TaqI | TCGA | 1 cut(s) | 440 |
| TasI | AATT | 3 cut(s) | 108, 217, 228 |
| TatI | WGTACW | 1 cut(s) | 129 |
| TauI | GCSGC | 1 cut(s) | 293 |
| Tru1I | TTAA | 1 cut(s) | 338 |
| Tru9I | TTAA | 1 cut(s) | 338 |
| TscAI | CASTG | 1 cut(s) | 433 |
| TseFI | GTSAC | 2 cut(s) | 306, 538 |
| Tsp45I | GTSAC | 2 cut(s) | 306, 538 |
| TspDTI | ATGAA | 1 cut(s) | 435 |
| TspRI | CASTG | 1 cut(s) | 433 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 474 |
| XceI | RCATGY | 1 cut(s) | 38 |
| XhoI | CTCGAG | 1 cut(s) | 439 |