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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 410 |
| AfaI | GTAC | 1 cut(s) | 59 |
| AluBI | AGCT | 2 cut(s) | 240, 429 |
| AluI | AGCT | 2 cut(s) | 240, 429 |
| Alw21I | GWGCWC | 1 cut(s) | 341 |
| Alw26I | GTCTC | 1 cut(s) | 261 |
| AoxI | GGCC | 1 cut(s) | 117 |
| ApoI | RAATTY | 1 cut(s) | 410 |
| AspLEI | GCGC | 1 cut(s) | 6 |
| AsuHPI | GGTGA | 1 cut(s) | 179 |
| BaeGI | GKGCMC | 1 cut(s) | 463 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 61, 93 |
| Bbv12I | GWGCWC | 1 cut(s) | 341 |
| BccI | CCATC | 1 cut(s) | 259 |
| BclI | TGATCA | 1 cut(s) | 435 |
| BcoDI | GTCTC | 1 cut(s) | 261 |
| BfaI | CTAG | 4 cut(s) | 17, 210, 479, 498 |
| BlpI | GCTNAGC | 1 cut(s) | 7 |
| BmiI | GGNNCC | 1 cut(s) | 96 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 7 |
| Bsa29I | ATCGAT | 3 cut(s) | 172, 231, 507 |
| BsaI | GGTCTC | 1 cut(s) | 261 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 260, 290 |
| Bse1I | ACTGG | 1 cut(s) | 61 |
| BseCI | ATCGAT | 3 cut(s) | 172, 231, 507 |
| BseNI | ACTGG | 1 cut(s) | 61 |
| BseSI | GKGCMC | 1 cut(s) | 463 |
| BshFI | GGCC | 1 cut(s) | 119 |
| BshVI | ATCGAT | 3 cut(s) | 172, 231, 507 |
| BsiHKAI | GWGCWC | 1 cut(s) | 341 |
| BsmAI | GTCTC | 1 cut(s) | 261 |
| BsnI | GGCC | 1 cut(s) | 119 |
| Bso31I | GGTCTC | 1 cut(s) | 261 |
| Bsp1286I | GDGCHC | 2 cut(s) | 341, 463 |
| Bsp143I | GATC | 6 cut(s) | 13, 169, 173, 232, 399, 435 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 7 |
| BspANI | GGCC | 1 cut(s) | 119 |
| BspDI | ATCGAT | 3 cut(s) | 172, 231, 507 |
| BspLI | GGNNCC | 1 cut(s) | 96 |
| BspQI | GCTCTTC | 1 cut(s) | 211 |
| BspTNI | GGTCTC | 1 cut(s) | 261 |
| BsrI | ACTGG | 1 cut(s) | 61 |
| BssMI | GATC | 6 cut(s) | 13, 169, 173, 232, 399, 435 |
| Bst4CI | ACNGT | 1 cut(s) | 458 |
| Bst6I | CTCTTC | 3 cut(s) | 55, 211, 386 |
| BstDEI | CTNAG | 1 cut(s) | 7 |
| BstHHI | GCGC | 1 cut(s) | 6 |
| BstKTI | GATC | 6 cut(s) | 16, 172, 176, 235, 402, 438 |
| BstMAI | GTCTC | 1 cut(s) | 261 |
| BstMBI | GATC | 6 cut(s) | 13, 169, 173, 232, 399, 435 |
| BstSLI | GKGCMC | 1 cut(s) | 463 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 38 |
| Bsu15I | ATCGAT | 3 cut(s) | 172, 231, 507 |
| BsuRI | GGCC | 1 cut(s) | 119 |
| BsuTUI | ATCGAT | 3 cut(s) | 172, 231, 507 |
| BtsIMutI | CAGTG | 2 cut(s) | 107, 463 |
| CfoI | GCGC | 1 cut(s) | 6 |
| ClaI | ATCGAT | 3 cut(s) | 172, 231, 507 |
| Csp6I | GTAC | 1 cut(s) | 58 |
| CviJI | RGCY | 9 cut(s) | 11, 23, 45, 72, 97, 119, 240, 429, 476 |
| CviKI_1 | RGCY | 9 cut(s) | 11, 23, 45, 72, 97, 119, 240, 429, 476 |
| CviQI | GTAC | 1 cut(s) | 58 |
| DdeI | CTNAG | 1 cut(s) | 7 |
| DpnI | GATC | 6 cut(s) | 15, 171, 175, 234, 401, 437 |
| DpnII | GATC | 6 cut(s) | 13, 169, 173, 232, 399, 435 |
| Eam1104I | CTCTTC | 3 cut(s) | 55, 211, 386 |
| EarI | CTCTTC | 3 cut(s) | 55, 211, 386 |
| Eco147I | AGGCCT | 1 cut(s) | 119 |
| Eco31I | GGTCTC | 1 cut(s) | 261 |
| EcoRI | GAATTC | 1 cut(s) | 410 |
| FaiI | YATR | 9 cut(s) | 56, 78, 133, 224, 512, 514, 516, 518, 520 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 34, 66 |
| FbaI | TGATCA | 1 cut(s) | 435 |
| FspBI | CTAG | 4 cut(s) | 17, 210, 479, 498 |
| GlaI | GCGC | 1 cut(s) | 5 |
| HaeIII | GGCC | 1 cut(s) | 119 |
| HhaI | GCGC | 1 cut(s) | 6 |
| Hin6I | GCGC | 1 cut(s) | 4 |
| HinP1I | GCGC | 1 cut(s) | 4 |
| HindIII | AAGCTT | 1 cut(s) | 238 |
| HinfI | GANTC | 1 cut(s) | 501 |
| HphI | GGTGA | 1 cut(s) | 179 |
| Hpy188I | TCNGA | 1 cut(s) | 404 |
| Hpy188III | TCNNGA | 6 cut(s) | 17, 39, 66, 210, 415, 443 |
| HpyAV | CCTTC | 1 cut(s) | 370 |
| HpyCH4III | ACNGT | 1 cut(s) | 458 |
| HpyF3I | CTNAG | 1 cut(s) | 7 |
| HspAI | GCGC | 1 cut(s) | 4 |
| Ksp22I | TGATCA | 1 cut(s) | 435 |
| Kzo9I | GATC | 6 cut(s) | 13, 169, 173, 232, 399, 435 |
| LguI | GCTCTTC | 1 cut(s) | 211 |
| LmnI | GCTCC | 2 cut(s) | 94, 434 |
| LpnPI | CCDG | 9 cut(s) | 24, 51, 74, 76, 204, 309, 428, 446, 456 |
| MaeI | CTAG | 4 cut(s) | 17, 210, 479, 498 |
| MalI | GATC | 6 cut(s) | 15, 171, 175, 234, 401, 437 |
| MboI | GATC | 6 cut(s) | 13, 169, 173, 232, 399, 435 |
| MboII | GAAGA | 7 cut(s) | 42, 189, 198, 385, 397, 400, 403 |
| MhlI | GDGCHC | 2 cut(s) | 341, 463 |
| MluCI | AATT | 2 cut(s) | 410, 488 |
| MlyI | GAGTC | 1 cut(s) | 510 |
| MnlI | CCTC | 7 cut(s) | 34, 56, 83, 108, 109, 130, 347 |
| NdeII | GATC | 6 cut(s) | 13, 169, 173, 232, 399, 435 |
| NlaIV | GGNNCC | 1 cut(s) | 96 |
| PceI | AGGCCT | 1 cut(s) | 119 |
| PciSI | GCTCTTC | 1 cut(s) | 211 |
| PleI | GAGTC | 1 cut(s) | 509 |
| PpsI | GAGTC | 1 cut(s) | 509 |
| PspN4I | GGNNCC | 1 cut(s) | 96 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 178, 210 |
| RsaI | GTAC | 1 cut(s) | 59 |
| RsaNI | GTAC | 1 cut(s) | 58 |
| SapI | GCTCTTC | 1 cut(s) | 211 |
| Sau3AI | GATC | 6 cut(s) | 13, 169, 173, 232, 399, 435 |
| SchI | GAGTC | 1 cut(s) | 510 |
| SduI | GDGCHC | 2 cut(s) | 341, 463 |
| SetI | ASST | 4 cut(s) | 223, 242, 298, 431 |
| Sse9I | AATT | 2 cut(s) | 410, 488 |
| SseBI | AGGCCT | 1 cut(s) | 119 |
| SspMI | CTAG | 4 cut(s) | 17, 210, 479, 498 |
| StuI | AGGCCT | 1 cut(s) | 119 |
| TaaI | ACNGT | 1 cut(s) | 458 |
| TaqI | TCGA | 4 cut(s) | 172, 231, 335, 507 |
| TasI | AATT | 2 cut(s) | 410, 488 |
| TscAI | CASTG | 2 cut(s) | 114, 463 |
| TspGWI | ACGGA | 1 cut(s) | 128 |
| TspRI | CASTG | 2 cut(s) | 114, 463 |
| XapI | RAATTY | 1 cut(s) | 410 |
| XbaI | TCTAGA | 2 cut(s) | 16, 209 |
| XspI | CTAG | 4 cut(s) | 17, 210, 479, 498 |